View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7162_high_7 (Length: 221)

Name: NF7162_high_7
Description: NF7162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7162_high_7
NF7162_high_7
[»] chr2 (2 HSPs)
chr2 (18-146)||(45213955-45214080)
chr2 (163-218)||(45213911-45213966)
[»] chr3 (2 HSPs)
chr3 (176-220)||(47677249-47677293)
chr3 (180-218)||(33689165-33689203)
[»] chr4 (1 HSPs)
chr4 (181-218)||(25617971-25618008)


Alignment Details
Target: chr2 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 18 - 146
Target Start/End: Complemental strand, 45214080 - 45213955
Alignment:
Q  18 gtcctctaactcacctttgcacaacacgcttgttcatgaacattttacaaacgccaaataatttatttattttttactttaagcaaaacgttttccttcc 117  Q
    ||||||||||||||||| |||||||||  ||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||    
T  45214080 gtcctctaactcaccttcgcacaacac--ttgttcatgaacattttacaaacgccaaataatttatat-ttttttactttaggcaaaacgttttccttcc 45213984  T
Q  118 acattccttgccacaaacctcagccggtg 146  Q
    |||||||||||||||||||||||| ||||    
T  45213983 acattccttgccacaaacctcagctggtg 45213955  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 163 - 218
Target Start/End: Complemental strand, 45213966 - 45213911
Alignment:
Q  163 cctcagctggtgcaagtgggataacacttgtgtgatatagagttgggggacattga 218  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  45213966 cctcagctggtgcaagtgggataacacttgtgtgacatagagttgggtgacattga 45213911  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 176 - 220
Target Start/End: Original strand, 47677249 - 47677293
Alignment:
Q  176 aagtgggataacacttgtgtgatatagagttgggggacattgacc 220  Q
    |||||||||||||||||||||| |||||||| || ||||||||||    
T  47677249 aagtgggataacacttgtgtgacatagagtttggtgacattgacc 47677293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 218
Target Start/End: Original strand, 33689165 - 33689203
Alignment:
Q  180 gggataacacttgtgtgatatagagttgggggacattga 218  Q
    |||||||||||||||||| ||||||||||| ||||||||    
T  33689165 gggataacacttgtgtgacatagagttgggtgacattga 33689203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 181 - 218
Target Start/End: Original strand, 25617971 - 25618008
Alignment:
Q  181 ggataacacttgtgtgatatagagttgggggacattga 218  Q
    ||||||||||||||||| ||||||||||| ||||||||    
T  25617971 ggataacacttgtgtgacatagagttgggtgacattga 25618008  T

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