View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7162_low_3 (Length: 409)

Name: NF7162_low_3
Description: NF7162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7162_low_3
NF7162_low_3
[»] chr7 (4 HSPs)
chr7 (90-406)||(11685639-11685949)
chr7 (25-69)||(11685971-11686015)
chr7 (314-408)||(23955283-23955376)
chr7 (312-408)||(45465182-45465277)
[»] chr4 (2 HSPs)
chr4 (313-405)||(230435-230526)
chr4 (314-395)||(39294857-39294937)
[»] chr6 (1 HSPs)
chr6 (315-409)||(31210437-31210530)
[»] chr8 (3 HSPs)
chr8 (314-395)||(9186656-9186736)
chr8 (313-388)||(10267837-10267911)
chr8 (312-394)||(11031427-11031508)
[»] chr3 (2 HSPs)
chr3 (371-406)||(51454283-51454318)
chr3 (311-407)||(23887195-23887290)
[»] chr2 (1 HSPs)
chr2 (313-385)||(42880832-42880903)


Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 90 - 406
Target Start/End: Complemental strand, 11685949 - 11685639
Alignment:
Q  90 gaagacttgctgtgaatgtggaaaagagcttaagtcatgccccatctgcagaagctgcattaacactagaattaagctttactaaggttattgttgttct 189  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  11685949 gaagacttgttgtgaatgtggaaaagagcttaagtcatgccccatctgcagaagctgcattaacactagaattaagctttactaaggttattgttgtt-- 11685852  T
Q  190 tgttgttgaccattcatgtacatgtatcaatctaattaatgaattttatattactttttct----gccactgcttttcttttctgaattgtttgttttga 285  Q
        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||    |||    
T  11685851 ----gttgaccattcatgtacatgtatcaatctaattaatgaattttatattactttttctttctgccactgcttttcttttctgaattgttt----tga 11685760  T
Q  286 atgtactcttgattcatagaatcgtaaagagtgaatcatcaactttgtctttgaattttataaggatcggttaaaatcgtcctctaattatgcgaaatat 385  Q
    |||||||||||| |||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||| ||  |||||| ||||||||    
T  11685759 atgtactcttgaatcatagaatcgtaaagagtgaatcatcatctttgtttttgaattttgtaaggatcggttaaaatcgttcttcaattatacgaaatat 11685660  T
Q  386 taaattagtctttgaatttgt 406  Q
    ||||||||| | |||||||||    
T  11685659 taaattagtttctgaatttgt 11685639  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 11686015 - 11685971
Alignment:
Q  25 aaattgttcaaaatacatcaaatatatgaggtatgttatttgata 69  Q
    |||||| ||||||||||||||||||||||||||||||||||||||    
T  11686015 aaattgctcaaaatacatcaaatatatgaggtatgttatttgata 11685971  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 314 - 408
Target Start/End: Complemental strand, 23955376 - 23955283
Alignment:
Q  314 gagtgaatcatcaactttgtctttgaattttataaggatcggttaaaatcgtcctctaattatgcgaaatattaaattagtctttgaatttgtta 408  Q
    ||||||||||||||||| |||| |||||||| || |||| ||  ||| ||||||  |||||||| ||||||| || ||| ||| |||||||||||    
T  23955376 gagtgaatcatcaacttcgtctctgaatttt-tatggattggccaaattcgtcccttaattatgtgaaatatcaatttaatctctgaatttgtta 23955283  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 408
Target Start/End: Complemental strand, 45465277 - 45465182
Alignment:
Q  312 aagagtgaatcatcaactttgtctttgaattttataaggatcggttaaaatcgtcctctaattatgcgaaatattaaattagtctttgaatttgtta 408  Q
    ||||||||||||||||||| ||| ||||||||| || || ||||| ||  ||||||   ||||||||||||||| || ||| ||  |||||||||||    
T  45465277 aagagtgaatcatcaacttcgtccttgaatttt-tacgggtcggtcaacttcgtccctcaattatgcgaaatatcaatttaatccctgaatttgtta 45465182  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 313 - 405
Target Start/End: Original strand, 230435 - 230526
Alignment:
Q  313 agagtgaatcatcaactttgtctttgaattttataaggatcggttaaaatcgtcctctaattatgcgaaatattaaattagtctttgaatttg 405  Q
    ||||||||||||||||||| || |||| |||  ||||||||||  ||||||||||   ||||||||||||||| |||||||||| ||||||||    
T  230435 agagtgaatcatcaactttatccttgagtttg-taaggatcggccaaaatcgtccctcaattatgcgaaatatcaaattagtctctgaatttg 230526  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 395
Target Start/End: Complemental strand, 39294937 - 39294857
Alignment:
Q  314 gagtgaatcatcaactttgtctttgaattttataaggatcggttaaaatcgtcctctaattatgcgaaatattaaattagtc 395  Q
    |||||||||||||| |||||| ||||||||  ||| ||||||  ||||| ||| || ||| ||| |||||||||||||||||    
T  39294937 gagtgaatcatcaagtttgtccttgaatttgttaa-gatcggccaaaattgtcttccaatgatgtgaaatattaaattagtc 39294857  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 315 - 409
Target Start/End: Complemental strand, 31210530 - 31210437
Alignment:
Q  315 agtgaatcatcaactttgtctttgaattttataaggatcggttaaaatcgtcctctaattatgcgaaatattaaattagtctttgaatttgttat 409  Q
    |||||||||||| ||| ||  ||||||||  ||||||||||| ||||||||||  ||||||||||||||||||||| | ||  ||||||||||||    
T  31210530 agtgaatcatcagcttcgttcttgaatttg-taaggatcggtcaaaatcgtcccttaattatgcgaaatattaaataaatccctgaatttgttat 31210437  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 314 - 395
Target Start/End: Complemental strand, 9186736 - 9186656
Alignment:
Q  314 gagtgaatcatcaactttgtctttgaattttataaggatcggttaaaatcgtcctctaattatgcgaaatattaaattagtc 395  Q
    ||||||||||||||||  ||| |||||||| | ||||||| |  |||||||||| | ||||||||||||||| |||||||||    
T  9186736 gagtgaatcatcaactccgtccttgaattt-acaaggatcagccaaaatcgtccccaaattatgcgaaatatcaaattagtc 9186656  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 313 - 388
Target Start/End: Original strand, 10267837 - 10267911
Alignment:
Q  313 agagtgaatcatcaactttgtctttgaattttataaggatcggttaaaatcgtcctctaattatgcgaaatattaa 388  Q
    ||||| |||||||||| |  || ||||||||| || | |||||| ||||||||||| |||||||||||||||||||    
T  10267837 agagttaatcatcaacctcatccttgaatttt-tacgaatcggtcaaaatcgtcctttaattatgcgaaatattaa 10267911  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 394
Target Start/End: Original strand, 11031427 - 11031508
Alignment:
Q  312 aagagtgaatcatcaactttgtctttgaattttataaggatcggttaaaatcgtcctctaattatgcgaaatattaaattagt 394  Q
    ||||||||||||||||||   || ||||||||  ||||||| ||  |||||||| ||| ||||||||||||||| ||||||||    
T  11031427 aagagtgaatcatcaactccatccttgaatttg-taaggatgggccaaaatcgttctccaattatgcgaaatatcaaattagt 11031508  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 371 - 406
Target Start/End: Complemental strand, 51454318 - 51454283
Alignment:
Q  371 aattatgcgaaatattaaattagtctttgaatttgt 406  Q
    ||||||||||||||| ||||||||||||||||||||    
T  51454318 aattatgcgaaatatcaaattagtctttgaatttgt 51454283  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 407
Target Start/End: Original strand, 23887195 - 23887290
Alignment:
Q  311 aaagagtgaatcatcaactttgtctttgaattttataaggatcggttaaaatcgtcctctaattatgcgaaatattaaattagtctttgaatttgtt 407  Q
    |||||||||||||||||||| ||| ||||||||| || || |||| |||  ||||||   ||||||||||||||| || ||| ||  ||||||||||    
T  23887195 aaagagtgaatcatcaacttcgtccttgaatttt-tatgggtcggctaacttcgtccctcaattatgcgaaatatcaatttaatccctgaatttgtt 23887290  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 385
Target Start/End: Complemental strand, 42880903 - 42880832
Alignment:
Q  313 agagtgaatcatcaactttgtctttgaattttataaggatcggttaaaatcgtcctctaattatgcgaaatat 385  Q
    |||||||||||||||||| |||  |||||||| || || ||||| ||| ||||||  ||||||||||||||||    
T  42880903 agagtgaatcatcaacttcgtccctgaatttt-tacgggtcggtcaaattcgtcccttaattatgcgaaatat 42880832  T

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