View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7162_low_4 (Length: 358)
Name: NF7162_low_4
Description: NF7162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7162_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 10 - 350
Target Start/End: Complemental strand, 13866420 - 13866080
Alignment:
| Q |
10 |
gacatcaccaaagaatagtacctaggaaaaacatccatgttgaaaataaatcagatgaaacgtgaggaaggtataaacgtgtagggaagattagactaaa |
109 |
Q |
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| T |
13866420 |
gacatcaccaaagaatagtacctaggaaaaacatccatgctgaaaataaatcagatgaaacgtgaggaaggtgtaaacgtgtagggaagattagactaaa |
13866321 |
T |
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| Q |
110 |
atgacaaagtctaagtcttccataaaccacacttaattaaatcacattctatataaaaataaaacatttaaacaatttcccatataccctaccccctcaa |
209 |
Q |
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| T |
13866320 |
atgacaaagtctaagtcttccataaaccacacttaattaaatcacattctatataaaaataaaacatttaaacaatttcccatataccctaccccctcaa |
13866221 |
T |
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| Q |
210 |
atattttaatcatgctttcatcaccatcaagaactaaaccgttcatatatttcccttctaaaaattccaccatcaatttcataataatcatgttcatctc |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13866220 |
atattttaatcatgctttcatcaccatcaagaactaaaccgttcatatatttcccttctaaaaattccaccatcaatttcataataatcatgttcatctc |
13866121 |
T |
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| Q |
310 |
tcatttttcctagctagaactactatactattgttcatctc |
350 |
Q |
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| T |
13866120 |
tcatttttcctagctagaactactatactatcgttcatctc |
13866080 |
T |
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