View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7162_low_9 (Length: 211)
Name: NF7162_low_9
Description: NF7162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7162_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 125; Significance: 1e-64; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 19 - 193
Target Start/End: Original strand, 771075 - 771248
Alignment:
| Q |
19 |
gaatacttctccaaatccataccattaccctgatttggtgctgtccattatnnnnnnncagaattaattccacttcacaccatcaaattagagagggaag |
118 |
Q |
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| T |
771075 |
gaatacttctccaaatccataccattaccctgatttggtgctgtccattataaaaaa-cagaattaattccaccacacgccatcaaattagagagggaag |
771173 |
T |
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| Q |
119 |
aaaaggacagaagactagtgtcaaagtctattagtagtcctagtcttggtatttaacaaattatactcagatcca |
193 |
Q |
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| T |
771174 |
aaaaggacagaacactagtgtcaaaatctattaatagtcctagtcttggtatttaacaaattatactcagatcca |
771248 |
T |
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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 780270 - 780220
Alignment:
| Q |
19 |
gaatacttctccaaatccataccattaccctgatttggtgctgtccattat |
69 |
Q |
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| T |
780270 |
gaatatttctccagatccatgccattaccttgatttggagctgtccattat |
780220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 784966 - 784916
Alignment:
| Q |
18 |
agaatacttctccaaatccataccattaccctgatttggtgctgtccatta |
68 |
Q |
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|||||| ||||||| ||||||||||||||||||||| || |||||| |||| |
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| T |
784966 |
agaatatttctccagatccataccattaccctgattgggagctgtcaatta |
784916 |
T |
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