View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7163_high_12 (Length: 248)
Name: NF7163_high_12
Description: NF7163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7163_high_12 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 11 - 248
Target Start/End: Complemental strand, 4301206 - 4300970
Alignment:
| Q |
11 |
ggacatcaaacacgtcttttatcataatatatacagaggtgatatgtgaatattgtaactaattaaacaaactttatgtagaacattaagcatttgattt |
110 |
Q |
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| T |
4301206 |
ggacatcaaacatgtcttttatcataatatatacagaggtgatatgtgaatattgtaactaattaaacagactttatgtagaacactaagcatttgattc |
4301107 |
T |
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| Q |
111 |
ttatggttataattactttctgtaaggaaattacattaatgttatgtgaataattacataatttgtcattcnnnnnnnngaataagagaagacggttgga |
210 |
Q |
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| T |
4301106 |
ttatggttataattactttctgtaagggaattacattaatgttatgtgaataattacataatttctca-accaaaaaaagaataagagaagacggttgga |
4301008 |
T |
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| Q |
211 |
taacagggaatatatttcttagaagcaaaggtttgtat |
248 |
Q |
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| T |
4301007 |
taacagggaatatatttcttagaagcaaaggtttgtat |
4300970 |
T |
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