View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7163_high_2 (Length: 640)
Name: NF7163_high_2
Description: NF7163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7163_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 334; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 18 - 375
Target Start/End: Original strand, 35247009 - 35247361
Alignment:
| Q |
18 |
caaacaaagtacacatgtgtttggccaattttgcttacgtctccaacttgcaattgcaattaacaagtatgatgaaaagatattatattatattggactt |
117 |
Q |
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| T |
35247009 |
caaacaaagtacacatgtgtttggccaattttgcttacgtctccaacttgcaattgcaattaacaagtatgatgaaaa-----catattatattggactt |
35247103 |
T |
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| Q |
118 |
accattaaaaatagtttgagtgaaggtacatccataaccaataggcaattcttcaggaatattcttttgaatggaagctttctcccaccatgtcgattct |
217 |
Q |
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| T |
35247104 |
accattaaaaatagtttgagtgaaggtacatccataaccaataggcaattcttcaggaatattcttttgaatggaagctttctcccaccatgtcgattct |
35247203 |
T |
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| Q |
218 |
tgaatttgagtaccagttagaaaaccatcttgtaattccaagtaactcttggaagaacgacccgcggcaaagcttgcgtaaataacacttggtgctctta |
317 |
Q |
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| T |
35247204 |
tgaatttgagtaccagttagaaaaccatcttgtaattccaagtaactcttggaagaacgacccgcggcaaagcttgcgtaaataacacttggtgctctta |
35247303 |
T |
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| Q |
318 |
gaactgatccaatatttggtgcagccgcaattgtcaatggatcaagagcctcactatc |
375 |
Q |
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| T |
35247304 |
gaactgatccaatatttggtgcagccgcaattgtcaatggatcaagagcctcactatc |
35247361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 440 - 635
Target Start/End: Original strand, 35247439 - 35247634
Alignment:
| Q |
440 |
tggtgacatacttgtaactttgaggccattgttgagaagtgaaagattcaggtcgatgagtagcaatgcgatcatcgtcgtcctcgtcatcattattatt |
539 |
Q |
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| T |
35247439 |
tggtgacatacttgtaactttgaggccattgttgagaagtgaaagattcaggtcgatgagtagcaatgcgatcatcttcgtcgtcgtcatcattattatt |
35247538 |
T |
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| Q |
540 |
actactgtcactatcgtagttaacagcttcaatatcagtttcatcttcattagcatctaagaaataatcattctctttttctttgttcttctcact |
635 |
Q |
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| T |
35247539 |
actactgtcactatcgtagttaacagcttcaatatcagtttcatcttcattagcatctaagaaataatcattctctttttctttgttcttgtcact |
35247634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 117 - 375
Target Start/End: Original strand, 35238467 - 35238743
Alignment:
| Q |
117 |
taccattaaaaatagtttgagtgaaggtacatccataaccaataggcaattcttcaggaatattcttttgaatggaagctttctcccaccatgt------ |
210 |
Q |
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| T |
35238467 |
taccattaaatatagtttgagtgaaggtacatccataaccaataggcaattcctcaggaatttgcatttgaattgaagctttctcccaccatgttgttgg |
35238566 |
T |
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| Q |
211 |
---cgattcttgaatttgagtaccagttagaaaa---------ccatcttgtaattccaagtaactcttggaagaacgacccgcggcaaagcttgcgtaa |
298 |
Q |
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| T |
35238567 |
gaacccttcttgaatttgattaccagatagaaaagatgtctttccatcatgtaattctaagtaactctttgatgaaaatgaacccacaaaacttgaataa |
35238666 |
T |
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| Q |
299 |
ataacacttggtgctcttagaactgatccaatatttggtgcagccgcaattgtcaatggatcaagagcctcactatc |
375 |
Q |
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| T |
35238667 |
agaacacttggtcctctcagaattgatccaagatttggtgcagcagcaattgtcaaaggatcaatagcctcactatc |
35238743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 534 - 629
Target Start/End: Original strand, 35239222 - 35239317
Alignment:
| Q |
534 |
attattactactgtcactatcgtagttaacagcttcaatatcagtttcatcttcattagcatctaagaaataatcattctctttttctttgttctt |
629 |
Q |
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| T |
35239222 |
attattgctactgtcactatcgtagttaacagcttcaatgtcggtttcatcttcgtttgcatccaaaaaatattcattctctttttctttgttctt |
35239317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 445 - 492
Target Start/End: Original strand, 35239145 - 35239192
Alignment:
| Q |
445 |
acatacttgtaactttgaggccattgttgagaagtgaaagattcaggt |
492 |
Q |
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| T |
35239145 |
acatacttgtaagtttgaggccattgttgagaagtgaaagattcaggt |
35239192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 447 - 485
Target Start/End: Complemental strand, 15034245 - 15034207
Alignment:
| Q |
447 |
atacttgtaactttgaggccattgttgagaagtgaaaga |
485 |
Q |
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| T |
15034245 |
atacttgtagctttgaggccattgctgagaagtgaaaga |
15034207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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