View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7163_high_3 (Length: 476)

Name: NF7163_high_3
Description: NF7163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7163_high_3
NF7163_high_3
[»] chr2 (7 HSPs)
chr2 (10-121)||(3253529-3253639)
chr2 (133-193)||(3253626-3253686)
chr2 (415-458)||(40363233-40363276)
chr2 (407-458)||(44587726-44587778)
chr2 (397-458)||(44274624-44274686)
chr2 (397-458)||(44587638-44587700)
chr2 (407-458)||(13333530-13333582)
[»] chr3 (2 HSPs)
chr3 (395-458)||(39964288-39964352)
chr3 (401-458)||(33412465-33412522)
[»] chr6 (2 HSPs)
chr6 (336-395)||(1693150-1693209)
chr6 (397-458)||(16121048-16121110)
[»] chr7 (4 HSPs)
chr7 (397-452)||(2456670-2456726)
chr7 (407-458)||(3967788-3967840)
chr7 (397-458)||(2456331-2456393)
chr7 (397-458)||(3967700-3967762)
[»] chr1 (6 HSPs)
chr1 (415-458)||(5246224-5246267)
chr1 (415-458)||(15057671-15057714)
chr1 (415-458)||(19175671-19175714)
chr1 (415-458)||(25554557-25554600)
chr1 (396-458)||(52923406-52923469)
chr1 (397-458)||(38834606-38834668)
[»] chr4 (5 HSPs)
chr4 (397-458)||(22235343-22235405)
chr4 (415-458)||(31089969-31090014)
chr4 (397-458)||(31933642-31933704)
chr4 (401-458)||(54164896-54164954)
chr4 (407-458)||(29006840-29006892)
[»] chr8 (1 HSPs)
chr8 (407-458)||(24052911-24052963)
[»] chr5 (3 HSPs)
chr5 (414-458)||(890784-890828)
chr5 (414-458)||(12646587-12646631)
chr5 (415-451)||(28351034-28351070)


Alignment Details
Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 10 - 121
Target Start/End: Original strand, 3253529 - 3253639
Alignment:
Q  10 agtgagatgaaaagaaggcggtgatgatgagttaccattagaagtcaaa-aacgactcaaaggactgcaatgcacaatt-gttgattgaagcgactagtc 107  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||||| || |||| ||||||   |||||||||||| ||  ||||||||||  |||     
T  3253529 agtgacatgaaaagaaggtggtgatgatgagttaccattagaagtcaaagaaagacttaaagga---caatgcacaattagtgaattgaagcgatgagtg 3253625  T
Q  108 ttgtgaaatccaaa 121  Q
    |||| |||||||||    
T  3253626 ttgtaaaatccaaa 3253639  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 133 - 193
Target Start/End: Original strand, 3253626 - 3253686
Alignment:
Q  133 ttgtaaaatccaaatcaatagccaagtgatgatcgatccctacacgcgtctcttcattata 193  Q
    ||||||||||||||||||||||||||||||||| || ||||| ||| |||||||| |||||    
T  3253626 ttgtaaaatccaaatcaatagccaagtgatgatagaaccctaaacgtgtctcttcgttata 3253686  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 415 - 458
Target Start/End: Original strand, 40363233 - 40363276
Alignment:
Q  415 tataagcaaaaaactactttttagattctttgaataaatgatgt 458  Q
    |||||||||||||||||||||||| ||| |||||||||||||||    
T  40363233 tataagcaaaaaactactttttaggttcattgaataaatgatgt 40363276  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 407 - 458
Target Start/End: Complemental strand, 44587778 - 44587726
Alignment:
Q  407 ggtcactat-ataagcaaaaaactactttttagattctttgaataaatgatgt 458  Q
    ||||||||| ||||||||||||||||||||||||||| |||||| | ||||||    
T  44587778 ggtcactattataagcaaaaaactactttttagattcattgaatgagtgatgt 44587726  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 458
Target Start/End: Complemental strand, 44274686 - 44274624
Alignment:
Q  397 tactccctcgggtcact-atataagcaaaaaactactttttagattctttgaataaatgatgt 458  Q
    ||||||||| ||||||| |||||||||||||   ||||||||||||| || ||||||||||||    
T  44274686 tactccctccggtcactgatataagcaaaaattcactttttagattcattcaataaatgatgt 44274624  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 458
Target Start/End: Original strand, 44587638 - 44587700
Alignment:
Q  397 tactccctcgggtcactat-ataagcaaaaaactactttttagattctttgaataaatgatgt 458  Q
    ||||||||| ||||| ||| |||||||||| |||| ||||||| ||| |||||||||||||||    
T  44587638 tactccctccggtcattattataagcaaaatactattttttaggttcattgaataaatgatgt 44587700  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 407 - 458
Target Start/End: Complemental strand, 13333582 - 13333530
Alignment:
Q  407 ggtcactat-ataagcaaaaaactactttttagattctttgaataaatgatgt 458  Q
    ||||||||| ||||||||||| |||| |||||||||| |||| ||||||||||    
T  13333582 ggtcactattataagcaaaaatctacattttagattcattgattaaatgatgt 13333530  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 395 - 458
Target Start/End: Original strand, 39964288 - 39964352
Alignment:
Q  395 tctactccctcgggtcactat-ataagcaaaaaactactttttagattctttgaataaatgatgt 458  Q
    ||||||||||| ||||| ||| ||||||||||||||||||||||||||| |||||||||| ||||    
T  39964288 tctactccctccggtcattattataagcaaaaaactactttttagattcattgaataaattatgt 39964352  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 401 - 458
Target Start/End: Original strand, 33412465 - 33412522
Alignment:
Q  401 ccctcgggtcactatataagcaaaaaactactttttagattctttgaataaatgatgt 458  Q
    ||||| |||||||||||||||||||| | ||||||||||| | || ||| ||||||||    
T  33412465 ccctctggtcactatataagcaaaaatccactttttagatacattcaattaatgatgt 33412522  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 336 - 395
Target Start/End: Original strand, 1693150 - 1693209
Alignment:
Q  336 tgatgacccgataatgcacaatgacttttttgtcagggtttcttgatgcaatcttggctt 395  Q
    |||||||||||||||||||| | ||||| |||| || |||||||||||||||||||||||    
T  1693150 tgatgacccgataatgcacagtcactttcttgttagagtttcttgatgcaatcttggctt 1693209  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 458
Target Start/End: Complemental strand, 16121110 - 16121048
Alignment:
Q  397 tactccctcgggtcactat-ataagcaaaaaactactttttagattctttgaataaatgatgt 458  Q
    ||||||||| | ||||||| ||||||||||| | ||||||||||||| || ||||||||||||    
T  16121110 tactccctccgatcactattataagcaaaaatcaactttttagattcattaaataaatgatgt 16121048  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 397 - 452
Target Start/End: Complemental strand, 2456726 - 2456670
Alignment:
Q  397 tactccctcgggtcactat-ataagcaaaaaactactttttagattctttgaataaa 452  Q
    ||||||||| ||||||||| ||||| ||||||||||||||||||||| |||||||||    
T  2456726 tactccctctggtcactattataagtaaaaaactactttttagattcattgaataaa 2456670  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 407 - 458
Target Start/End: Complemental strand, 3967840 - 3967788
Alignment:
Q  407 ggtcactat-ataagcaaaaaactactttttagattctttgaataaatgatgt 458  Q
    ||||||||| ||||||||||||||||||||||| ||| |||||||||||||||    
T  3967840 ggtcactattataagcaaaaaactactttttaggttcattgaataaatgatgt 3967788  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 458
Target Start/End: Original strand, 2456331 - 2456393
Alignment:
Q  397 tactccctcgggtcactat-ataagcaaaaaactactttttagattctttgaataaatgatgt 458  Q
    ||||||||| | ||||||| ||||||||||| ||||||||||| ||| |||||| ||||||||    
T  2456331 tactccctccgatcactattataagcaaaaatctactttttaggttcattgaattaatgatgt 2456393  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 458
Target Start/End: Original strand, 3967700 - 3967762
Alignment:
Q  397 tactccctcgggtcactat-ataagcaaaaaactactttttagattctttgaataaatgatgt 458  Q
    ||||||||| | ||||||| ||||||||||||||||||||||| ||| |||||| | ||||||    
T  3967700 tactccctccgatcactattataagcaaaaaactactttttaggttcattgaatgagtgatgt 3967762  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 415 - 458
Target Start/End: Complemental strand, 5246267 - 5246224
Alignment:
Q  415 tataagcaaaaaactactttttagattctttgaataaatgatgt 458  Q
    ||||| |||||||||| ||||||||||| |||||||||||||||    
T  5246267 tataaacaaaaaactattttttagattcattgaataaatgatgt 5246224  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 415 - 458
Target Start/End: Original strand, 15057671 - 15057714
Alignment:
Q  415 tataagcaaaaaactactttttagattctttgaataaatgatgt 458  Q
    |||||||||||||||||||||||||||| |||||| | ||||||    
T  15057671 tataagcaaaaaactactttttagattcattgaatgagtgatgt 15057714  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 415 - 458
Target Start/End: Complemental strand, 19175714 - 19175671
Alignment:
Q  415 tataagcaaaaaactactttttagattctttgaataaatgatgt 458  Q
    |||||||||||| ||||||||||||||| || ||||||||||||    
T  19175714 tataagcaaaaatctactttttagattcattcaataaatgatgt 19175671  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 415 - 458
Target Start/End: Original strand, 25554557 - 25554600
Alignment:
Q  415 tataagcaaaaaactactttttagattctttgaataaatgatgt 458  Q
    |||||||||||||  ||||||||||||| |||||||||||||||    
T  25554557 tataagcaaaaaataactttttagattcattgaataaatgatgt 25554600  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 396 - 458
Target Start/End: Complemental strand, 52923469 - 52923406
Alignment:
Q  396 ctactccctcgggtcactat-ataagcaaaaaactactttttagattctttgaataaatgatgt 458  Q
    |||| ||||| ||||||||| ||||||||||| ||||||||||| ||| || ||||||||||||    
T  52923469 ctacaccctcaggtcactattataagcaaaaatctactttttaggttcattcaataaatgatgt 52923406  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 458
Target Start/End: Original strand, 38834606 - 38834668
Alignment:
Q  397 tactccctcgggtcactat-ataagcaaaaaactactttttagattctttgaataaatgatgt 458  Q
    ||||||||| ||||||||| |||||||||||  || ||||||||||| || ||||||||||||    
T  38834606 tactccctccggtcactattataagcaaaaatttattttttagattcattaaataaatgatgt 38834668  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 458
Target Start/End: Complemental strand, 22235405 - 22235343
Alignment:
Q  397 tactccctcgggtcactat-ataagcaaaaaactactttttagattctttgaataaatgatgt 458  Q
    ||||||||| ||||||||| ||||||||||||  || |||||||||| |||||||| ||||||    
T  22235405 tactccctccggtcactattataagcaaaaaatcacattttagattcattgaataactgatgt 22235343  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 415 - 458
Target Start/End: Complemental strand, 31090014 - 31089969
Alignment:
Q  415 tataagcaaaaa--actactttttagattctttgaataaatgatgt 458  Q
    ||||||||||||  |||||||||||||||| |||||||||||||||    
T  31090014 tataagcaaaaagaactactttttagattcattgaataaatgatgt 31089969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 458
Target Start/End: Original strand, 31933642 - 31933704
Alignment:
Q  397 tactccctcgggtcactat-ataagcaaaaaactactttttagattctttgaataaatgatgt 458  Q
    ||||||||| ||||||||| |||||||||   ||||||||||||||| || ||||||||||||    
T  31933642 tactccctccggtcactattataagcaaatttctactttttagattcatttaataaatgatgt 31933704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 401 - 458
Target Start/End: Complemental strand, 54164954 - 54164896
Alignment:
Q  401 ccctcgggtcactat-ataagcaaaaaactactttttagattctttgaataaatgatgt 458  Q
    ||||| ||||||||| ||||||||||| ||| ||||||||||| || ||||||||||||    
T  54164954 ccctccggtcactattataagcaaaaatctattttttagattcattcaataaatgatgt 54164896  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 407 - 458
Target Start/End: Original strand, 29006840 - 29006892
Alignment:
Q  407 ggtcactat-ataagcaaaaaactactttttagattctttgaataaatgatgt 458  Q
    ||||||||| ||||||||||| ||| ||||||||||| || ||||||||||||    
T  29006840 ggtcactattataagcaaaaatctattttttagattcattcaataaatgatgt 29006892  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 407 - 458
Target Start/End: Complemental strand, 24052963 - 24052911
Alignment:
Q  407 ggtcactat-ataagcaaaaaactactttttagattctttgaataaatgatgt 458  Q
    ||||||||| |||| |||||| ||||||||||| ||| |||||||||||||||    
T  24052963 ggtcactattataaacaaaaatctactttttaggttcattgaataaatgatgt 24052911  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 414 - 458
Target Start/End: Original strand, 890784 - 890828
Alignment:
Q  414 atataagcaaaaaactactttttagattctttgaataaatgatgt 458  Q
    ||||||| |||||||||  ||||||||||||| ||||||||||||    
T  890784 atataagaaaaaaactatattttagattctttcaataaatgatgt 890828  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 414 - 458
Target Start/End: Complemental strand, 12646631 - 12646587
Alignment:
Q  414 atataagcaaaaaactactttttagattctttgaataaatgatgt 458  Q
    |||||||||||||  |||||||||||||| || ||||||||||||    
T  12646631 atataagcaaaaatttactttttagattcatttaataaatgatgt 12646587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 415 - 451
Target Start/End: Complemental strand, 28351070 - 28351034
Alignment:
Q  415 tataagcaaaaaactactttttagattctttgaataa 451  Q
    |||||||||||||| ||||||||||||| ||||||||    
T  28351070 tataagcaaaaaacaactttttagattcattgaataa 28351034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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