View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7163_high_9 (Length: 301)

Name: NF7163_high_9
Description: NF7163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7163_high_9
NF7163_high_9
[»] chr5 (18 HSPs)
chr5 (45-272)||(6420416-6420633)
chr5 (1-42)||(1098175-1098216)
chr5 (1-42)||(1781168-1781209)
chr5 (1-42)||(1831351-1831392)
chr5 (1-42)||(40316818-40316859)
chr5 (1-42)||(41410682-41410723)
chr5 (1-43)||(20040438-20040480)
chr5 (1-42)||(19344722-19344763)
chr5 (1-42)||(31191200-31191241)
chr5 (1-39)||(14607580-14607618)
chr5 (1-42)||(14633007-14633048)
chr5 (4-39)||(14057711-14057746)
chr5 (1-36)||(30211764-30211799)
chr5 (1-43)||(13548212-13548254)
chr5 (4-42)||(27675540-27675578)
chr5 (1-43)||(30721708-30721750)
chr5 (1-42)||(20022860-20022901)
chr5 (4-48)||(40079975-40080019)
[»] chr6 (12 HSPs)
chr6 (1-44)||(24798573-24798616)
chr6 (1-42)||(2397770-2397811)
chr6 (1-48)||(2667352-2667399)
chr6 (4-46)||(9022836-9022878)
chr6 (4-42)||(32541507-32541545)
chr6 (1-42)||(17496345-17496386)
chr6 (1-42)||(29795451-29795492)
chr6 (1-44)||(995561-995604)
chr6 (1-42)||(2656697-2656738)
chr6 (1-44)||(24949533-24949576)
chr6 (1-48)||(30699255-30699302)
chr6 (1-42)||(28483037-28483079)
[»] chr3 (24 HSPs)
chr3 (1-44)||(9484594-9484637)
chr3 (1-44)||(29793396-29793439)
chr3 (1-43)||(42098645-42098687)
chr3 (1-42)||(16434875-16434916)
chr3 (1-42)||(49076444-49076485)
chr3 (1-45)||(34555148-34555192)
chr3 (1-43)||(901106-901148)
chr3 (1-42)||(12948040-12948081)
chr3 (1-42)||(29720395-29720436)
chr3 (1-42)||(34263722-34263763)
chr3 (1-42)||(46866343-46866384)
chr3 (1-42)||(48927820-48927861)
chr3 (1-42)||(50673677-50673718)
chr3 (1-43)||(53275013-53275055)
chr3 (1-42)||(29455726-29455767)
chr3 (4-44)||(2643290-2643330)
chr3 (4-44)||(29809343-29809383)
chr3 (1-37)||(34669613-34669649)
chr3 (1-37)||(38878496-38878532)
chr3 (4-52)||(44782004-44782052)
chr3 (1-40)||(14751060-14751099)
chr3 (1-42)||(36179154-36179195)
chr3 (1-42)||(38833983-38834024)
chr3 (4-44)||(1778359-1778399)
[»] chr1 (15 HSPs)
chr1 (1-44)||(45299316-45299359)
chr1 (1-42)||(8251176-8251217)
chr1 (1-42)||(52749281-52749322)
chr1 (1-42)||(10100540-10100581)
chr1 (1-48)||(6017476-6017523)
chr1 (1-43)||(10124108-10124150)
chr1 (5-42)||(5606422-5606459)
chr1 (1-42)||(5945765-5945806)
chr1 (2-36)||(26543874-26543908)
chr1 (4-42)||(28490160-28490198)
chr1 (4-42)||(41855751-41855789)
chr1 (4-42)||(44240519-44240557)
chr1 (5-42)||(7075361-7075398)
chr1 (4-44)||(8048778-8048818)
chr1 (1-33)||(31651928-31651960)
[»] scaffold0221 (1 HSPs)
scaffold0221 (1-42)||(5376-5417)
[»] chr8 (14 HSPs)
chr8 (1-42)||(23437833-23437874)
chr8 (1-48)||(761544-761591)
chr8 (1-48)||(30464426-30464473)
chr8 (1-48)||(25009138-25009185)
chr8 (1-42)||(4327139-4327180)
chr8 (1-42)||(28583323-28583364)
chr8 (1-42)||(44887735-44887776)
chr8 (1-49)||(5777574-5777622)
chr8 (1-44)||(14378706-14378749)
chr8 (1-43)||(25691617-25691659)
chr8 (4-42)||(37094132-37094170)
chr8 (5-43)||(38842161-38842199)
chr8 (1-43)||(43184799-43184841)
chr8 (3-43)||(3466282-3466322)
[»] chr4 (16 HSPs)
chr4 (1-42)||(10384848-10384889)
chr4 (1-42)||(37667796-37667837)
chr4 (1-42)||(55631897-55631938)
chr4 (1-44)||(31152659-31152702)
chr4 (1-44)||(46608211-46608254)
chr4 (1-43)||(48380472-48380514)
chr4 (1-42)||(40411631-40411672)
chr4 (1-37)||(39170963-39170999)
chr4 (4-46)||(6520431-6520473)
chr4 (1-42)||(3708253-3708294)
chr4 (1-42)||(39332852-39332893)
chr4 (1-42)||(43447165-43447206)
chr4 (4-44)||(31657381-31657421)
chr4 (4-43)||(8525441-8525480)
chr4 (1-42)||(43047387-43047428)
chr4 (14-42)||(44210149-44210177)
[»] chr7 (10 HSPs)
chr7 (1-44)||(36819614-36819657)
chr7 (1-44)||(38069049-38069092)
chr7 (1-42)||(16807169-16807210)
chr7 (1-42)||(30462244-30462285)
chr7 (1-42)||(35693853-35693894)
chr7 (1-42)||(37101049-37101090)
chr7 (1-42)||(40231928-40231969)
chr7 (1-42)||(25274040-25274081)
chr7 (4-45)||(32972353-32972394)
chr7 (2-42)||(35265841-35265881)
[»] chr2 (13 HSPs)
chr2 (1-40)||(7724633-7724672)
chr2 (1-43)||(12208988-12209030)
chr2 (2-43)||(5096247-5096288)
chr2 (1-42)||(40471736-40471777)
chr2 (2-42)||(4137410-4137450)
chr2 (1-41)||(16127802-16127842)
chr2 (1-40)||(31603438-31603477)
chr2 (4-42)||(41575562-41575600)
chr2 (1-42)||(8373434-8373475)
chr2 (1-44)||(10333600-10333643)
chr2 (1-43)||(16126104-16126146)
chr2 (1-43)||(16333479-16333521)
chr2 (2-42)||(41436832-41436872)
[»] scaffold0001 (1 HSPs)
scaffold0001 (1-51)||(183957-184007)
[»] scaffold0281 (1 HSPs)
scaffold0281 (4-42)||(13104-13142)


Alignment Details
Target: chr5 (Bit Score: 157; Significance: 2e-83; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 45 - 272
Target Start/End: Complemental strand, 6420633 - 6420416
Alignment:
Q  45 ttttacaattatagatgaatgagtatgagacagattgagtattatttagatgccatgatatgatgttttgtcatggcatgttgatttggcattgaatgat 144  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||             |||||||     
T  6420633 ttttagaattatagatgaatgagtatgagacaaattgagtattatttagatgccatgataagatgttttgtcatggcat-------------tgaatgac 6420547  T
Q  145 ggtcaatcttcaacatatat---gtactgtctctccagttatcttgctgctctccccttggacacaagtgaaggaaaatgccaaggaattctgtattcat 241  Q
    ||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6420546 ggtcaatcttcaacatatatcatgtactgtctctccagttatcttgctgctctccccttggacacaagtgaaggaaaatgccaaggaattctgtattcat 6420447  T
Q  242 ttttgtttttcacatcccatcccatagatag 272  Q
    |||||||||||||||||||||||||||||||    
T  6420446 ttttgtttttcacatcccatcccatagatag 6420416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 1098216 - 1098175
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggagta 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  1098216 cacattttcaaacaggtcatttattgcgggacggagggagta 1098175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 1781168 - 1781209
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggagta 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  1781168 cacattttcaaacaggtcatttattgcgggacggagggagta 1781209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 1831392 - 1831351
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggagta 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  1831392 cacattttcaaacaggtcatttattgcgggacggagggagta 1831351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 40316859 - 40316818
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggagta 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  40316859 cacattttcaaacaggtcatttattgcgggacggagggagta 40316818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 41410682 - 41410723
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggagta 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  41410682 cacattttcaaacaggtcatttattgcgggacggagggagta 41410723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 20040438 - 20040480
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggagtaa 43  Q
    ||||||||||||||||||||||||| |||||||||||||||||    
T  20040438 cacattttcaaacaggtcatttattacgggacggagggagtaa 20040480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 19344722 - 19344763
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggagta 42  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  19344722 cacattttcaaacaggtcatttattgcgggacggaaggagta 19344763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 31191200 - 31191241
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggagta 42  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  31191200 cacattttcaaacatgtcatttattgcgggacggagggagta 31191241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 14607580 - 14607618
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggaggga 39  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  14607580 cacattttcaaacatgtcatttattgcgggacggaggga 14607618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 14633048 - 14633007
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggagta 42  Q
    ||||||||||||||| ||||||||||| ||||||||||||||    
T  14633048 cacattttcaaacagatcatttattgcaggacggagggagta 14633007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 39
Target Start/End: Complemental strand, 14057746 - 14057711
Alignment:
Q  4 attttcaaacaggtcatttattgcgggacggaggga 39  Q
    |||||||||||| |||||||||||||||||||||||    
T  14057746 attttcaaacagatcatttattgcgggacggaggga 14057711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 30211764 - 30211799
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggag 36  Q
    |||||||| |||||||||||||||||||||||||||    
T  30211764 cacatttttaaacaggtcatttattgcgggacggag 30211799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 13548254 - 13548212
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggagtaa 43  Q
    ||||||||||||||||||| |||||  ||||||||||||||||    
T  13548254 cacattttcaaacaggtcacttattaagggacggagggagtaa 13548212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 27675578 - 27675540
Alignment:
Q  4 attttcaaacaggtcatttattgcgggacggagggagta 42  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  27675578 attttcaaataagtcatttattgcgggacggagggagta 27675540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 30721708 - 30721750
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggagtaa 43  Q
    |||||||||||| | |||||||||||||||| |||||||||||    
T  30721708 cacattttcaaatatgtcatttattgcgggatggagggagtaa 30721750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 20022901 - 20022860
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggagta 42  Q
    |||||||||||||||||||||||||||| || ||||| ||||    
T  20022901 cacattttcaaacaggtcatttattgcgagaaggaggaagta 20022860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 40080019 - 40079975
Alignment:
Q  4 attttcaaacaggtcatttattgcgggacggagggagtaattttt 48  Q
    ||||||||| ||||||| |||||  ||||||||||||||||||||    
T  40080019 attttcaaataggtcatctattgtaggacggagggagtaattttt 40079975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 24798573 - 24798616
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggagtaat 44  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  24798573 cacattttcaaacaggtcatttattgcgggacggagggagtaat 24798616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 2397811 - 2397770
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggagta 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  2397811 cacattttcaaacaggtcatttattgcgggacggagggagta 2397770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 2667352 - 2667399
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggagtaattttt 48  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||    
T  2667352 cacattttcaaacagatcatttattgcgggacggagggagtacttttt 2667399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 9022878 - 9022836
Alignment:
Q  4 attttcaaacaggtcatttattgcgggacggagggagtaattt 46  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  9022878 attttcaaacaggtcatttattgcaggacggagggagtaattt 9022836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 42
Target Start/End: Original strand, 32541507 - 32541545
Alignment:
Q  4 attttcaaacaggtcatttattgcgggacggagggagta 42  Q
    |||||||||||||||||||||||||||||||||||||||    
T  32541507 attttcaaacaggtcatttattgcgggacggagggagta 32541545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 17496345 - 17496386
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggagta 42  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  17496345 cacattttcaaacagatcatttattgcgggacggagggagta 17496386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 29795492 - 29795451
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggagta 42  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  29795492 cacattttcaaacagatcatttattgcgggacggagggagta 29795451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 995604 - 995561
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggagtaat 44  Q
    |||||||||||||| |||||||||||| ||||||||||||||||    
T  995604 cacattttcaaacatgtcatttattgcaggacggagggagtaat 995561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 2656697 - 2656738
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggagta 42  Q
    ||||||||||||||| ||||||||||||||||||| ||||||    
T  2656697 cacattttcaaacagctcatttattgcgggacggatggagta 2656738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 24949576 - 24949533
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggagtaat 44  Q
    ||||||||||||  |||||| |||||||||||||||||||||||    
T  24949576 cacattttcaaatgggtcatctattgcgggacggagggagtaat 24949533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 30699302 - 30699255
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggagtaattttt 48  Q
    |||||||| |||||| ||||||||||||| |||||||||||| |||||    
T  30699302 cacatttttaaacagatcatttattgcggaacggagggagtatttttt 30699255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 28483079 - 28483037
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggac-ggagggagta 42  Q
    ||||||||||||||| |||||||||||||||| ||||||||||    
T  28483079 cacattttcaaacagatcatttattgcgggacgggagggagta 28483037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 9484637 - 9484594
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggagtaat 44  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  9484637 cacattttcaaacaggtcatttattgcgggacggagggagtaat 9484594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 29793396 - 29793439
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggagtaat 44  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  29793396 cacattttcaaacaggtcatttattgcgggacggagggagtaat 29793439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 42098645 - 42098687
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggagtaa 43  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  42098645 cacattttcaaacaggtcatttattgcgggacggagggagtaa 42098687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 16434875 - 16434916
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggagta 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  16434875 cacattttcaaacaggtcatttattgcgggacggagggagta 16434916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 49076444 - 49076485
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggagta 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  49076444 cacattttcaaacaggtcatttattgcgggacggagggagta 49076485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 34555192 - 34555148
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggagtaatt 45  Q
    ||||||||||||||||||| |||||||||||||||||||||||||    
T  34555192 cacattttcaaacaggtcacttattgcgggacggagggagtaatt 34555148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 901106 - 901148
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggagtaa 43  Q
    ||||||||||||||| |||||||||||||||||||||||||||    
T  901106 cacattttcaaacagatcatttattgcgggacggagggagtaa 901148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 12948081 - 12948040
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggagta 42  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  12948081 cacattttcaaacatgtcatttattgcgggacggagggagta 12948040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 29720436 - 29720395
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggagta 42  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  29720436 cacattttcaaacagatcatttattgcgggacggagggagta 29720395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 34263722 - 34263763
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggagta 42  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  34263722 cacatttttaaacaggtcatttattgcgggacggagggagta 34263763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 46866384 - 46866343
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggagta 42  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  46866384 cacattttcaaacatgtcatttattgcgggacggagggagta 46866343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 48927820 - 48927861
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggagta 42  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  48927820 cacattttcaaacagatcatttattgcgggacggagggagta 48927861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 50673718 - 50673677
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggagta 42  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  50673718 cacattttcaaacaggtcatttattgcggaacggagggagta 50673677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 53275013 - 53275055
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggagtaa 43  Q
    |||||||||||| |||||||||||||||||||||| |||||||    
T  53275013 cacattttcaaataggtcatttattgcgggacggaaggagtaa 53275055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 29455726 - 29455767
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggagta 42  Q
    ||||||||||||||||||||||||| | ||||||||||||||    
T  29455726 cacattttcaaacaggtcatttattacaggacggagggagta 29455767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 2643290 - 2643330
Alignment:
Q  4 attttcaaacaggtcatttattgcgggacggagggagtaat 44  Q
    ||||||||| ||||||| |||||||||||||||||||||||    
T  2643290 attttcaaataggtcatctattgcgggacggagggagtaat 2643330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 29809383 - 29809343
Alignment:
Q  4 attttcaaacaggtcatttattgcgggacggagggagtaat 44  Q
    ||||||||| ||||||| |||||||||||||||||||||||    
T  29809383 attttcaaataggtcatctattgcgggacggagggagtaat 29809343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 34669649 - 34669613
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagg 37  Q
    |||||||||||||| ||||||||||||||||||||||    
T  34669649 cacattttcaaacatgtcatttattgcgggacggagg 34669613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 38878496 - 38878532
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagg 37  Q
    ||||||||||||||||||||||||| |||||||||||    
T  38878496 cacattttcaaacaggtcatttattacgggacggagg 38878532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 44782004 - 44782052
Alignment:
Q  4 attttcaaacaggtcatttattgcgggacggagggagtaatttttacaa 52  Q
    ||||||||| ||||||| |||||||||||||||||||||| | ||||||    
T  44782004 attttcaaataggtcatctattgcgggacggagggagtaaatgttacaa 44782052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 14751060 - 14751099
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggag 40  Q
    |||||||||||||||||||| |||||||||| ||||||||    
T  14751060 cacattttcaaacaggtcatctattgcgggagggagggag 14751099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 36179154 - 36179195
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggagta 42  Q
    ||||||||||||||||| |||||||| ||||||||| |||||    
T  36179154 cacattttcaaacaggttatttattgtgggacggagagagta 36179195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 38833983 - 38834024
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggagta 42  Q
    |||||||| ||||||||||||||||||||||| |||| ||||    
T  38833983 cacatttttaaacaggtcatttattgcgggacagaggaagta 38834024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 1778399 - 1778359
Alignment:
Q  4 attttcaaacaggtcatttattgcgggacggagggagtaat 44  Q
    ||||||||| ||||||| |||||||||||||||| ||||||    
T  1778399 attttcaaataggtcatctattgcgggacggaggaagtaat 1778359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 45299359 - 45299316
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggagtaat 44  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  45299359 cacattttcaaacaggtcatttattgcgggacggagggagtaat 45299316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 8251176 - 8251217
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggagta 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  8251176 cacattttcaaacaggtcatttattgcgggacggagggagta 8251217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 52749322 - 52749281
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggagta 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  52749322 cacattttcaaacaggtcatttattgcgggacggagggagta 52749281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 10100540 - 10100581
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggagta 42  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  10100540 cacattttcaaacatgtcatttattgcgggacggagggagta 10100581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 6017476 - 6017523
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggagtaattttt 48  Q
    ||||||||||||||| ||||||||||||||||||||| |||| |||||    
T  6017476 cacattttcaaacagatcatttattgcgggacggaggaagtatttttt 6017523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 10124150 - 10124108
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggagtaa 43  Q
    ||||||||||||||||||||||||||||||| ||| |||||||    
T  10124150 cacattttcaaacaggtcatttattgcgggatggatggagtaa 10124108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 5606422 - 5606459
Alignment:
Q  5 ttttcaaacaggtcatttattgcgggacggagggagta 42  Q
    |||||||| |||||||||||||||||||||||||||||    
T  5606422 ttttcaaataggtcatttattgcgggacggagggagta 5606459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 5945806 - 5945765
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggagta 42  Q
    |||||||||||||| ||||||||||||||||||||| |||||    
T  5945806 cacattttcaaacatgtcatttattgcgggacggagagagta 5945765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 36
Target Start/End: Complemental strand, 26543908 - 26543874
Alignment:
Q  2 acattttcaaacaggtcatttattgcgggacggag 36  Q
    |||||||||||||| ||||||||||||||||||||    
T  26543908 acattttcaaacagatcatttattgcgggacggag 26543874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 28490198 - 28490160
Alignment:
Q  4 attttcaaacaggtcatttattgcgggacggagggagta 42  Q
    ||||||||| ||||||| |||||||||||||||||||||    
T  28490198 attttcaaataggtcatctattgcgggacggagggagta 28490160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 42
Target Start/End: Original strand, 41855751 - 41855789
Alignment:
Q  4 attttcaaacaggtcatttattgcgggacggagggagta 42  Q
    ||||||||| |||||||||||| ||||||||||||||||    
T  41855751 attttcaaataggtcatttattacgggacggagggagta 41855789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 44240557 - 44240519
Alignment:
Q  4 attttcaaacaggtcatttattgcgggacggagggagta 42  Q
    ||||| ||| |||||||||||||||||||||||||||||    
T  44240557 atttttaaataggtcatttattgcgggacggagggagta 44240519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 7075361 - 7075398
Alignment:
Q  5 ttttcaaacaggtcatttattgcgggacggagggagta 42  Q
    |||||||||| |||||||||||||||| ||||||||||    
T  7075361 ttttcaaacaagtcatttattgcgggatggagggagta 7075398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 8048778 - 8048818
Alignment:
Q  4 attttcaaacaggtcatttattgcgggacggagggagtaat 44  Q
    ||||||||| ||||||| |||||| ||||||||||||||||    
T  8048778 attttcaaataggtcatctattgcaggacggagggagtaat 8048818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 31651928 - 31651960
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacg 33  Q
    |||||||||||| ||||||||||||||||||||    
T  31651928 cacattttcaaataggtcatttattgcgggacg 31651960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0221 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 5417 - 5376
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggagta 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  5417 cacattttcaaacaggtcatttattgcgggacggagggagta 5376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 23437833 - 23437874
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggagta 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  23437833 cacattttcaaacaggtcatttattgcgggacggagggagta 23437874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 761591 - 761544
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggagtaattttt 48  Q
    |||||||||||||||||||||||||||||||| |||||||||| ||||    
T  761591 cacattttcaaacaggtcatttattgcgggacagagggagtaactttt 761544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 30464473 - 30464426
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggagtaattttt 48  Q
    |||||||||||||| |||||||||||||||||||||||||||| ||||    
T  30464473 cacattttcaaacatgtcatttattgcgggacggagggagtaactttt 30464426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 25009185 - 25009138
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggagtaattttt 48  Q
    ||||||||||||||| |||||||||| |||||||||| ||||||||||    
T  25009185 cacattttcaaacagatcatttattgagggacggaggaagtaattttt 25009138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 4327139 - 4327180
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggagta 42  Q
    |||||||||||||| |||||||||||||||||| ||||||||    
T  4327139 cacattttcaaacaagtcatttattgcgggacgcagggagta 4327180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 28583323 - 28583364
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggagta 42  Q
    |||||||||||| ||||||| |||||||||||||||||||||    
T  28583323 cacattttcaaaaaggtcatctattgcgggacggagggagta 28583364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 44887735 - 44887776
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggagta 42  Q
    |||||||||||| || ||||||||||||||||||||||||||    
T  44887735 cacattttcaaatagatcatttattgcgggacggagggagta 44887776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 5777574 - 5777622
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggagtaattttta 49  Q
    ||||||||||||||||||||||||||| ||| ||| |||||| ||||||    
T  5777574 cacattttcaaacaggtcatttattgcaggatggatggagtatttttta 5777622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 14378706 - 14378749
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggagtaat 44  Q
    |||||||||||||   ||||||||||||||||||||||||||||    
T  14378706 cacattttcaaacctatcatttattgcgggacggagggagtaat 14378749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 25691617 - 25691659
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggagtaa 43  Q
    |||||||||||||| |||||||||||||| ||||| |||||||    
T  25691617 cacattttcaaacatgtcatttattgcggaacggatggagtaa 25691659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 37094170 - 37094132
Alignment:
Q  4 attttcaaacaggtcatttattgcgggacggagggagta 42  Q
    ||||||||| |||||||||||||||||||||||| ||||    
T  37094170 attttcaaataggtcatttattgcgggacggaggaagta 37094132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 43
Target Start/End: Complemental strand, 38842199 - 38842161
Alignment:
Q  5 ttttcaaacaggtcatttattgcgggacggagggagtaa 43  Q
    ||||||||||||||||||||| ||||||||||| |||||    
T  38842199 ttttcaaacaggtcatttattacgggacggaggaagtaa 38842161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 43184799 - 43184841
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggagtaa 43  Q
    |||||||| |||||||||||||||||| ||| |||||||||||    
T  43184799 cacatttttaaacaggtcatttattgcaggatggagggagtaa 43184841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 3466322 - 3466282
Alignment:
Q  3 cattttcaaacaggtcatttattgcgggacggagggagtaa 43  Q
    ||||||||||  |||||| ||||||||||||||||||||||    
T  3466322 cattttcaaatgggtcatctattgcgggacggagggagtaa 3466282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 10384889 - 10384848
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggagta 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  10384889 cacattttcaaacaggtcatttattgcgggacggagggagta 10384848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 37667796 - 37667837
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggagta 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  37667796 cacattttcaaacaggtcatttattgcgggacggagggagta 37667837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 55631897 - 55631938
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggagta 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  55631897 cacattttcaaacaggtcatttattgcgggacggagggagta 55631938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 31152702 - 31152659
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggagtaat 44  Q
    |||||||||||||||||||||||||| |||||||||||||||||    
T  31152702 cacattttcaaacaggtcatttattgtgggacggagggagtaat 31152659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 46608254 - 46608211
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggagtaat 44  Q
    ||||||||||||||||||||||||||||||||||||| ||||||    
T  46608254 cacattttcaaacaggtcatttattgcgggacggaggaagtaat 46608211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 48380514 - 48380472
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggagtaa 43  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  48380514 cacattttcaaacaggtcacttattgcgggacggagggagtaa 48380472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 40411631 - 40411672
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggagta 42  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  40411631 cacattttcaaacaggtcatttattacgggacggagggagta 40411672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 39170999 - 39170963
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagg 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  39170999 cacattttcaaacaggtcatttattgcgggacggagg 39170963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 6520473 - 6520431
Alignment:
Q  4 attttcaaacaggtcatttattgcgggacggagggagtaattt 46  Q
    ||||||||| |||||||||||||||||||||| ||||||||||    
T  6520473 attttcaaataggtcatttattgcgggacggatggagtaattt 6520431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 3708294 - 3708253
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggagta 42  Q
    ||||||||||||||| |||||||||| |||||||||||||||    
T  3708294 cacattttcaaacagatcatttattgtgggacggagggagta 3708253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 39332852 - 39332893
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggagta 42  Q
    ||||||||||||||| |||||||||||| |||||||||||||    
T  39332852 cacattttcaaacagatcatttattgcgtgacggagggagta 39332893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 43447206 - 43447165
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggagta 42  Q
    ||||||||||||||| ||||||||| ||||||||||||||||    
T  43447206 cacattttcaaacagatcatttattacgggacggagggagta 43447165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 31657381 - 31657421
Alignment:
Q  4 attttcaaacaggtcatttattgcgggacggagggagtaat 44  Q
    ||||| ||| |||||||||||||||||||||||||||||||    
T  31657381 atttttaaataggtcatttattgcgggacggagggagtaat 31657421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 43
Target Start/End: Original strand, 8525441 - 8525480
Alignment:
Q  4 attttcaaacaggtcatttattgcgggacggagggagtaa 43  Q
    ||||||||||||||||||||||  ||||||||||||||||    
T  8525441 attttcaaacaggtcatttattatgggacggagggagtaa 8525480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 43047428 - 43047387
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggagta 42  Q
    |||||||||||||| |||||||||||||||| ||||| ||||    
T  43047428 cacattttcaaacaagtcatttattgcgggatggaggaagta 43047387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 42
Target Start/End: Complemental strand, 44210177 - 44210149
Alignment:
Q  14 aggtcatttattgcgggacggagggagta 42  Q
    |||||||||||||||||||||||||||||    
T  44210177 aggtcatttattgcgggacggagggagta 44210149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 36819657 - 36819614
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggagtaat 44  Q
    ||||||||||||||||||||||||||||| ||||||||||||||    
T  36819657 cacattttcaaacaggtcatttattgcggaacggagggagtaat 36819614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 38069092 - 38069049
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggagtaat 44  Q
    ||||||||||||||||||||||||||||| ||||||||||||||    
T  38069092 cacattttcaaacaggtcatttattgcggaacggagggagtaat 38069049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 16807169 - 16807210
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggagta 42  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  16807169 cacattttcaaacaggtcatttattacgggacggagggagta 16807210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 30462244 - 30462285
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggagta 42  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  30462244 cacattttcaaacagatcatttattgcgggacggagggagta 30462285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 35693853 - 35693894
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggagta 42  Q
    |||||||||||||||||||||||||||| |||||||||||||    
T  35693853 cacattttcaaacaggtcatttattgcgcgacggagggagta 35693894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 37101049 - 37101090
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggagta 42  Q
    |||||||||||| ||||||| |||||||||||||||||||||    
T  37101049 cacattttcaaataggtcatctattgcgggacggagggagta 37101090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 40231969 - 40231928
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggagta 42  Q
    ||||||||||||||||| ||||||| ||||||||||||||||    
T  40231969 cacattttcaaacaggttatttattacgggacggagggagta 40231928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 25274040 - 25274081
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggagta 42  Q
    ||||||||||||||| ||||||||||| ||||||| ||||||    
T  25274040 cacattttcaaacagatcatttattgcaggacggatggagta 25274081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 45
Target Start/End: Original strand, 32972353 - 32972394
Alignment:
Q  4 attttcaaacaggtcatttattgcgggacggagggagtaatt 45  Q
    ||||||||| ||||||| |||||||||| |||||||||||||    
T  32972353 attttcaaataggtcatctattgcgggagggagggagtaatt 32972394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 42
Target Start/End: Original strand, 35265841 - 35265881
Alignment:
Q  2 acattttcaaacaggtcatttattgcgggacggagggagta 42  Q
    ||||||| ||||| |||||||||| ||||||||||||||||    
T  35265841 acatttttaaacaagtcatttattacgggacggagggagta 35265881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 7724633 - 7724672
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggag 40  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  7724633 cacattttcaaacaggtcatttattgcgggacggagggag 7724672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 12209030 - 12208988
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggagtaa 43  Q
    ||||||||||||||||||||||||||||||||||||| |||||    
T  12209030 cacattttcaaacaggtcatttattgcgggacggaggaagtaa 12208988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 43
Target Start/End: Complemental strand, 5096288 - 5096247
Alignment:
Q  2 acattttcaaacaggtcatttattgcgggacggagggagtaa 43  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  5096288 acattttcaaacaggtaatttattgcgggacggagggagtaa 5096247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 40471777 - 40471736
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggagta 42  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  40471777 cacattttcaaacaggttatttattgcgggacggagggagta 40471736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 4137450 - 4137410
Alignment:
Q  2 acattttcaaacaggtcatttattgcgggacggagggagta 42  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  4137450 acattttcaaacatgtcatttattgcgggacggagggagta 4137410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 16127802 - 16127842
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggagt 41  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  16127802 cacattttcaaataggtcatttattgcgggacggagggagt 16127842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 31603438 - 31603477
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggag 40  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  31603438 cacattttcaaacaggtcatttattgtgggacggagggag 31603477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 41575600 - 41575562
Alignment:
Q  4 attttcaaacaggtcatttattgcgggacggagggagta 42  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  41575600 attttcaaataggtcatttattgcgggacggagggagta 41575562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 8373475 - 8373434
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggagta 42  Q
    ||||||||||||||| |||||||||||||||| |||||||||    
T  8373475 cacattttcaaacagatcatttattgcgggacagagggagta 8373434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 10333600 - 10333643
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggagtaat 44  Q
    ||||||||||||||| ||||||||| || |||||||||||||||    
T  10333600 cacattttcaaacagatcatttattacgagacggagggagtaat 10333643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 16126104 - 16126146
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggagtaa 43  Q
    ||||||||||||  |||||||||||||||||||||| ||||||    
T  16126104 cacattttcaaatgggtcatttattgcgggacggagagagtaa 16126146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 16333521 - 16333479
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggagtaa 43  Q
    ||||||||||||  |||||||||||||||||||||| ||||||    
T  16333521 cacattttcaaatgggtcatttattgcgggacggagagagtaa 16333479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 41436872 - 41436832
Alignment:
Q  2 acattttcaaacaggtcatttattgcgggacggagggagta 42  Q
    |||||||||||||  ||||||||| ||||||||||||||||    
T  41436872 acattttcaaacatttcatttattacgggacggagggagta 41436832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 184007 - 183957
Alignment:
Q  1 cacattttcaaacaggtcatttattgcgggacggagggagtaatttttaca 51  Q
    ||||||||||||||||| |||||||||| ||||||||||||| | ||||||    
T  184007 cacattttcaaacaggttatttattgcgagacggagggagtattatttaca 183957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 13142 - 13104
Alignment:
Q  4 attttcaaacaggtcatttattgcgggacggagggagta 42  Q
    ||||| ||||||||||||||||| |||||||||||||||    
T  13142 atttttaaacaggtcatttattgtgggacggagggagta 13104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University