View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7163_low_1 (Length: 1270)

Name: NF7163_low_1
Description: NF7163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7163_low_1
NF7163_low_1
[»] chr1 (11 HSPs)
chr1 (578-851)||(8936369-8936642)
chr1 (578-851)||(8959890-8960163)
chr1 (582-830)||(9475203-9475451)
chr1 (578-851)||(8924728-8925001)
chr1 (870-995)||(9239049-9239174)
chr1 (578-848)||(9306728-9306998)
chr1 (578-851)||(9335504-9335777)
chr1 (578-811)||(9244985-9245218)
chr1 (583-851)||(9359247-9359515)
chr1 (585-805)||(8945870-8946090)
chr1 (19-157)||(17457151-17457289)
[»] chr3 (1 HSPs)
chr3 (596-811)||(9168414-9168629)
[»] chr6 (5 HSPs)
chr6 (582-804)||(15912720-15912942)
chr6 (10-207)||(13336317-13336515)
chr6 (32-180)||(25028970-25029118)
chr6 (23-160)||(13320286-13320423)
chr6 (21-155)||(13320000-13320134)
[»] chr8 (1 HSPs)
chr8 (21-172)||(10553370-10553521)
[»] scaffold0427 (1 HSPs)
scaffold0427 (21-180)||(14939-15101)
[»] chr2 (1 HSPs)
chr2 (21-143)||(16224768-16224890)


Alignment Details
Target: chr1 (Bit Score: 142; Significance: 7e-74; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 142; E-Value: 7e-74
Query Start/End: Original strand, 578 - 851
Target Start/End: Original strand, 8936369 - 8936642
Alignment:
Q  578 atagcgaggaatggaggagcaatcaccctcttgaattccgggatcaactacccaaattgtgtagtcattgtagttgattgacttcacatagtatttaccc 677  Q
    |||| ||||||||| ||||||||||||||||| ||||||||||||||||| || ||||||||||| ||||||||||||||| ||||||||||||||||||    
T  8936369 atagtgaggaatggtggagcaatcaccctcttcaattccgggatcaactaaccgaattgtgtagttattgtagttgattgatttcacatagtatttaccc 8936468  T
Q  678 gaaaacaatgttaacgttgtgaggttgttttcacaggataactcatacctcggatcaccaaaagatgctggatcgttcttaagtcgaaacagatgtttta 777  Q
    || ||||  |||||| |||||| ||||||||| ||||||||||||||||| ||||||||| | |||| |||||| | ||||||||||||  ||||| |||    
T  8936469 gacaacagagttaacattgtgatgttgttttcgcaggataactcataccttggatcaccacatgatgttggatcatccttaagtcgaaatggatgtgtta 8936568  T
Q  778 tgtttgtgattttaccacatgaagaaggtagacaatttgtttggctattattattgttaattgcatcacatgtt 851  Q
    ||||||||||||| || |||||||||||| ||||   ||||||| || || ||||  |||||||||||||||||    
T  8936569 tgtttgtgattttgccgcatgaagaaggtggacagaatgtttggttactagtatttgtaattgcatcacatgtt 8936642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 138; E-Value: 2e-71
Query Start/End: Original strand, 578 - 851
Target Start/End: Original strand, 8959890 - 8960163
Alignment:
Q  578 atagcgaggaatggaggagcaatcaccctcttgaattccgggatcaactacccaaattgtgtagtcattgtagttgattgacttcacatagtatttaccc 677  Q
    |||| ||||||||| ||||||||||||||||| ||||||||||||||||| || ||||||||||| ||||||||||||||| ||||||||||||||||||    
T  8959890 atagtgaggaatggtggagcaatcaccctcttcaattccgggatcaactaaccgaattgtgtagttattgtagttgattgatttcacatagtatttaccc 8959989  T
Q  678 gaaaacaatgttaacgttgtgaggttgttttcacaggataactcatacctcggatcaccaaaagatgctggatcgttcttaagtcgaaacagatgtttta 777  Q
    || ||||| ||||| ||||||| ||||||||| ||||||||||| ||||||||||||||| | |||| ||| || | ||||||||||||  |||||  ||    
T  8959990 gacaacaaagttaaggttgtgatgttgttttcgcaggataactcgtacctcggatcaccacatgatgttgggtcatccttaagtcgaaaaggatgtgata 8960089  T
Q  778 tgtttgtgattttaccacatgaagaaggtagacaatttgtttggctattattattgttaattgcatcacatgtt 851  Q
    |||||   ||||| ||||||||||||||| |||||| ||||||| || || ||||  |||||||||||||||||    
T  8960090 tgtttccaattttgccacatgaagaaggtggacaatatgtttggttactagtatttgtaattgcatcacatgtt 8960163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 137; E-Value: 6e-71
Query Start/End: Original strand, 582 - 830
Target Start/End: Complemental strand, 9475451 - 9475203
Alignment:
Q  582 cgaggaatggaggagcaatcaccctcttgaattccgggatcaactacccaaattgtgtagtcattgtagttgattgacttcacatagtatttacccgaaa 681  Q
    |||||||||||| |||||||| ||||||||||||| ||||||||||  |  |||||||||| || |||||||||||||||||||| ||| ||||||||||    
T  9475451 cgaggaatggagaagcaatcatcctcttgaattccaggatcaactagtctgattgtgtagttatcgtagttgattgacttcacattgtagttacccgaaa 9475352  T
Q  682 acaatgttaacgttgtgaggttgttttcacaggataactcatacctcggatcaccaaaagatgctggatcgttcttaagtcgaaacagatgttttatgtt 781  Q
     ||| ||||||||||||| ||||||| | ||||||||||| ||||||||||||||| | | || |||||| ||||| ||||||||| |||||||||||||    
T  9475351 gcaaagttaacgttgtgatgttgtttacgcaggataactcgtacctcggatcaccacaggttgttggatcattcttgagtcgaaacggatgttttatgtt 9475252  T
Q  782 tgtgattttaccacatgaagaaggtagacaatttgtttggctattatta 830  Q
    ||||| ||| ||||||||||||||| |||||||||||||| ||||||||    
T  9475251 tgtgagtttgccacatgaagaaggtggacaatttgtttggttattatta 9475203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 134; E-Value: 4e-69
Query Start/End: Original strand, 578 - 851
Target Start/End: Original strand, 8924728 - 8925001
Alignment:
Q  578 atagcgaggaatggaggagcaatcaccctcttgaattccgggatcaactacccaaattgtgtagtcattgtagttgattgacttcacatagtatttaccc 677  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||||||  |  |||||||||| ||||||||||||||| |||||||||||||||| |    
T  8924728 atagcgaggaaaggaggagcaatcaccctcttcaattccgggatcaactattctgattgtgtagttattgtagttgattgatttcacatagtatttactc 8924827  T
Q  678 gaaaacaatgttaacgttgtgaggttgttttcacaggataactcatacctcggatcaccaaaagatgctggatcgttcttaagtcgaaacagatgtttta 777  Q
    || || |  ||||| ||||| | ||||||||| ||||||||||| ||||||||||||||| | | || |||||| ||||||||||||||| ||| |||||    
T  8924828 gacaatagagttaaagttgttatgttgttttcgcaggataactcgtacctcggatcaccacaggttgttggatcattcttaagtcgaaacggatatttta 8924927  T
Q  778 tgtttgtgattttaccacatgaagaaggtagacaatttgtttggctattattattgttaattgcatcacatgtt 851  Q
    ||||  ||||||| ||||||||||||||| |||||| ||||||| || || ||||  |||||||||||||||||    
T  8924928 tgttgttgattttgccacatgaagaaggtggacaatatgtttggttactagtatttgtaattgcatcacatgtt 8925001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 870 - 995
Target Start/End: Complemental strand, 9239174 - 9239049
Alignment:
Q  870 agtagcagcatcactaccatactaatttggaagaagcataagaatgattccatccctctgctcatgactaatgctgaaatggaacatgtatcacttatca 969  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9239174 agtagcagcatcactaccatactaatttggaagaagcataagaatgattccatccctctgctcatgactaatgctgaaatggaacatgtatcacttatca 9239075  T
Q  970 gacactcgttgtaagaacaaaactta 995  Q
    ||||||||||||||||||||||||||    
T  9239074 gacactcgttgtaagaacaaaactta 9239049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 115; E-Value: 9e-58
Query Start/End: Original strand, 578 - 848
Target Start/End: Complemental strand, 9306998 - 9306728
Alignment:
Q  578 atagcgaggaatggaggagcaatcaccctcttgaattccgggatcaactacccaaattgtgtagtcattgtagttgattgacttcacatagtatttaccc 677  Q
    ||||||||| ||||||||||||||||| |||||||||||  |||||||||| |  |||| |||||   ||||||||||||| |||||||||||||||||     
T  9306998 atagcgaggcatggaggagcaatcaccttcttgaattccaagatcaactactctcattgagtagtttctgtagttgattgatttcacatagtatttacct 9306899  T
Q  678 gaaaacaatgttaacgttgtgaggttgttttcacaggataactcatacctcggatcaccaaaagatgctggatcgttcttaagtcgaaacagatgtttta 777  Q
    |||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||  |   ||||||||| |||| |||||||||  |||||||||    
T  9306898 gaaaacaaagttaacgttgtgatgttgttttcgcaggataactcatacctcggatcaccgcagtttgctggatcattctgaagtcgaaaaggatgtttta 9306799  T
Q  778 tgtttgtgattttaccacatgaagaaggtagacaatttgtttggctattattattgttaattgcatcacat 848  Q
    ||||| ||||| | |||||||| || | | |||||| ||||||| ||||| || |  ||||||||| ||||    
T  9306798 tgtttctgattgtgccacatgatgaggatggacaatatgtttggttattagtaatagtaattgcataacat 9306728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 578 - 851
Target Start/End: Original strand, 9335504 - 9335777
Alignment:
Q  578 atagcgaggaatggaggagcaatcaccctcttgaattccgggatcaactacccaaattgtgtagtcattgtagttgattgacttcacatagtatttaccc 677  Q
    ||||||||||||||||||| ||||||| |||| |||||| |||||||||| || |||||||||||   |||||||||||  || |||||||||||||||     
T  9335504 atagcgaggaatggaggagtaatcaccttcttcaattcctggatcaactaaccgaattgtgtagtttatgtagttgatttcctgcacatagtatttacct 9335603  T
Q  678 gaaaacaatgttaacgttgtgaggttgttttcacaggataactcatacctcggatcaccaaaagatgctggatcgttcttaagtcgaaacagatgtttta 777  Q
    |||||||  ||||||| ||||| ||||||||| ||||||||||| ||| | ||||||||| | | |||||| || ||||||||||||||| ||||||| |    
T  9335604 gaaaacagagttaacgctgtgatgttgttttcgcaggataactcgtactttggatcaccacaggttgctgggtcattcttaagtcgaaacggatgtttga 9335703  T
Q  778 tgtttgtgattttaccacatgaagaaggtagacaatttgtttggctattattattgttaattgcatcacatgtt 851  Q
    ||||  ||||||| || |||||||||||| |||||| ||||| | ||||  ||||  |||||||||||||||||    
T  9335704 tgttgctgattttgccgcatgaagaaggtggacaatatgttttgttatttgtattagtaattgcatcacatgtt 9335777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 110; E-Value: 8e-55
Query Start/End: Original strand, 578 - 811
Target Start/End: Complemental strand, 9245218 - 9244985
Alignment:
Q  578 atagcgaggaatggaggagcaatcaccctcttgaattccgggatcaactacccaaattgtgtagtcattgtagttgattgacttcacatagtatttaccc 677  Q
    ||||||||||| ||||||||||  |||||||| ||||||||||||||||| | ||||||||||||  ||||||||||||| |||||||||||| ||||||    
T  9245218 atagcgaggaagggaggagcaactaccctcttcaattccgggatcaactaacaaaattgtgtagttgttgtagttgattgccttcacatagtacttaccc 9245119  T
Q  678 gaaaacaatgttaacgttgtgaggttgttttcacaggataactcatacctcggatcaccaaaagatgctggatcgttcttaagtcgaaacagatgtttta 777  Q
    |||||||  ||||||  ||||| ||||||||| ||||||||||||||| ||||||||||| |   || ||| || ||| ||||||||||| ||||||| |    
T  9245118 gaaaacagagttaacactgtgatgttgttttcgcaggataactcatacttcggatcaccacagcttgttgggtcattcataagtcgaaacggatgtttga 9245019  T
Q  778 tgtttgtgattttaccacatgaagaaggtagaca 811  Q
    ||||  ||||||| ||||||||||||||| ||||    
T  9245018 tgttgctgatttttccacatgaagaaggtggaca 9244985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 89; E-Value: 3e-42
Query Start/End: Original strand, 583 - 851
Target Start/End: Original strand, 9359247 - 9359515
Alignment:
Q  583 gaggaatggaggagcaatcaccctcttgaattccgggatcaactacccaaattgtgtagtcattgtagttgattgacttcacatagtatttacccgaaaa 682  Q
    |||||||||||||||||| |||||||| |||| | |||||||||| || ||||||||| |    ||||||||||  || ||||||||||||||| |||||    
T  9359247 gaggaatggaggagcaattaccctcttcaattactggatcaactagccgaattgtgtaatttacgtagttgatttcctgcacatagtatttacctgaaaa 9359346  T
Q  683 caatgttaacgttgtgaggttgttttcacaggataactcatacctcggatcaccaaaagatgctggatcgttcttaagtcgaaacagatgttttatgttt 782  Q
    ||  ||||||   |||| ||||||||| ||||||||||| ||| ||||||||||| |   || ||| || ||| ||||||||||  |||||  |||||||    
T  9359347 cagagttaacacggtgatgttgttttcgcaggataactcgtacttcggatcaccacagcttgttgggtcattcataagtcgaaaaggatgtgatatgttt 9359446  T
Q  783 gtgattttaccacatgaagaaggtagacaatttgtttggctattattattgttaattgcatcacatgtt 851  Q
    |||||||| || |||||||||||| |||||| ||||||| ||||  ||||  |||||||||||||||||    
T  9359447 gtgattttgccgcatgaagaaggtggacaatatgtttggttatttgtattagtaattgcatcacatgtt 9359515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 81; E-Value: 2e-37
Query Start/End: Original strand, 585 - 805
Target Start/End: Original strand, 8945870 - 8946090
Alignment:
Q  585 ggaatggaggagcaatcaccctcttgaattccgggatcaactacccaaattgtgtagtcattgtagttgattgacttcacatagtatttacccgaaaaca 684  Q
    ||||| || ||||||||||| ||||  ||||| |||||||||| || ||||||||||| ||||||||||||||| || |||| ||||||||| |||| ||    
T  8945870 ggaattgaagagcaatcaccttcttttattccaggatcaactaaccgaattgtgtagttattgtagttgattgattttacatggtatttaccagaaagca 8945969  T
Q  685 atgttaacgttgtgaggttgttttcacaggataactcatacctcggatcaccaaaagatgctggatcgttcttaagtcgaaacagatgttttatgtttgt 784  Q
       ||||| |||||| ||| ||||| ||||||||||| ||||||||||||||  | | ||||||||| ||||||||||| ||  |||  ||||||||  |    
T  8945970 gctttaacattgtgatgtttttttcgcaggataactcgtacctcggatcaccgcaggttgctggatcattcttaagtcggaagggatactttatgttgct 8946069  T
Q  785 gattttaccacatgaagaagg 805  Q
    |||||| ||||||||||||||    
T  8946070 gattttgccacatgaagaagg 8946090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 55; E-Value: 6e-22
Query Start/End: Original strand, 19 - 157
Target Start/End: Original strand, 17457151 - 17457289
Alignment:
Q  19 aaggggtggtaattgcacatgcgctccgacgcccaaatcaggtgggaaacaaggagaatctgaggtgttttggagagattgaacttacttggaattgtag 118  Q
    |||||||||||  |||||||||||||| |||||||| |||||||| |||| |||||||| |||||| ||  ||| ||  |||||||||| | ||||||||    
T  17457151 aaggggtggtacctgcacatgcgctccaacgcccaagtcaggtggaaaactaggagaatgtgaggttttagggataggatgaacttactcgaaattgtag 17457250  T
Q  119 tagagtctcctttagataggcataagggagtgtaatggg 157  Q
    |  |||| |||||| ||||| |||| |||||||||||||    
T  17457251 tgaagtcccctttatataggaataatggagtgtaatggg 17457289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 2e-46; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 2e-46
Query Start/End: Original strand, 596 - 811
Target Start/End: Original strand, 9168414 - 9168629
Alignment:
Q  596 gcaatcaccctcttgaattccgggatcaactacccaaattgtgtagtcattgtagttgattgacttcacatagtatttacccgaaaacaatgttaacgtt 695  Q
    ||||||||| ||||  ||||| ||||||||||| |  ||||||||||  |||||||||||||| |||||||||||||||||| ||||||   ||| ||||    
T  9168414 gcaatcaccttcttctattccaggatcaactactctgattgtgtagtttttgtagttgattgatttcacatagtatttaccccaaaacagacttagcgtt 9168513  T
Q  696 gtgaggttgttttcacaggataactcatacctcggatcaccaaaagatgctggatcgttcttaagtcgaaacagatgttttatgtttgtgattttaccac 795  Q
    |||| ||||||||||||||||||||| ||||||||||||||| |   || |||||| || |||||||| ||| |||||||||||||| | ||||| ||||    
T  9168514 gtgatgttgttttcacaggataactcgtacctcggatcaccacagtttgttggatcatttttaagtcggaacggatgttttatgtttctcattttgccac 9168613  T
Q  796 atgaagaaggtagaca 811  Q
    ||||||||||| ||||    
T  9168614 atgaagaaggtggaca 9168629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 1e-38; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 1e-38
Query Start/End: Original strand, 582 - 804
Target Start/End: Complemental strand, 15912942 - 15912720
Alignment:
Q  582 cgaggaatggaggagcaatcaccctcttgaattccgggatcaactacccaaattgtgtagtcattgtagttgattgacttcacatagtatttacccgaaa 681  Q
    ||||||||||||||||||||||||||||| |  |||| |||||||| || |||||||||||  || |||||||||  |  ||||||||| ||||| ||||    
T  15912942 cgaggaatggaggagcaatcaccctcttgcaacccggcatcaactaacctaattgtgtagtttttatagttgatttccaacacatagtacttacctgaaa 15912843  T
Q  682 acaatgttaacgttgtgaggttgttttcacaggataactcatacctcggatcaccaaaagatgctggatcgttcttaagtcgaaacagatgttttatgtt 781  Q
    |||   |||| ||||||| ||||||||| ||||||||||| || |||||||| ||| | |  ||||| || ||||||||||||||  |||||||||||||    
T  15912842 acagatttaaggttgtgatgttgttttcgcaggataactcgtagctcggatccccacaggtcgctgggtcattcttaagtcgaaatggatgttttatgtt 15912743  T
Q  782 tgtgattttaccacatgaagaag 804  Q
      |||||||||| ||||||||||    
T  15912742 gctgattttaccgcatgaagaag 15912720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 10 - 207
Target Start/End: Original strand, 13336317 - 13336515
Alignment:
Q  10 gtgagatgaaaggggtggtaattgcacatgcgctccgacgcccaaatcaggtgggaaacaaggagaatctgaggtgttttggagagattgaacttacttg 109  Q
    |||||| | ||||||||||| ||||| |||||| || || ||||| | |||||||||||||||||  |  || || | |  || ||| | ||||||||||    
T  13336317 gtgagacgtaaggggtggtacttgcaaatgcgccccaacacccaagttaggtgggaaacaaggaggttgagatgtttatgagatagaataaacttacttg 13336416  T
Q  110 gaattgtagtagagtctccttt-agataggcataagggagtgtaatgggcttcgagtcttattgggtcttactatataattgggtatttgataagtgga 207  Q
     ||||||| |||| || ||||| | ||||||||||||||||||| ||||||| |||  |||||||| ||||| |||||||||||  |||| ||||||||    
T  13336417 aaattgtaatagattccccttttatataggcataagggagtgtattgggcttggagctttattgggccttaccatataattgggcctttggtaagtgga 13336515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 32 - 180
Target Start/End: Original strand, 25028970 - 25029118
Alignment:
Q  32 tgcacatgcgctccgacgcccaaatcaggtgggaaacaaggagaatctgaggtgttttggagagattgaacttacttggaattgtagtagagtctccttt 131  Q
    |||||||| |||| || ||| || |||||||||||||||||||||| | |||| ||  |||||||  |||||||| |||||||||||| ||||| || ||    
T  25028970 tgcacatgtgctctgatgcctaagtcaggtgggaaacaaggagaatgtaaggttttagggagagaacgaacttacctggaattgtagtggagtccccctt 25029069  T
Q  132 agataggcataagggagtgtaatgggcttcgagtcttattgggtcttac 180  Q
      ||||||||  | ||||||||||| |||  ||| ||||||||||||||    
T  25029070 ctataggcatccgagagtgtaatggacttgaagttttattgggtcttac 25029118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 23 - 160
Target Start/End: Complemental strand, 13320423 - 13320286
Alignment:
Q  23 ggtggtaattgcacatgcgctccgacgcccaaatcaggtgggaaacaaggagaatctgaggtgttttggagagattgaacttacttggaattgtagtaga 122  Q
    |||||||  ||||||||| |||||||||| || ||| |||  ||||||||||     ||||| | ||||| ||| |||||||||||||||||||||| ||    
T  13320423 ggtggtacctgcacatgcactccgacgcctaagtcatgtgaaaaacaaggaggtcgagaggtttattggatagaatgaacttacttggaattgtagtgga 13320324  T
Q  123 gtctcctttagataggcataagggagtgtaatgggctt 160  Q
    || |||| || ||||||||||| ||||||| |||||||    
T  13320323 gtgtcctctatataggcataagagagtgtattgggctt 13320286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 155
Target Start/End: Original strand, 13320000 - 13320134
Alignment:
Q  21 ggggtggtaattgcacatgcgctccgacgcccaaatcaggtgggaaacaaggagaatctgaggtgttttggagagattgaacttacttggaattgtagta 120  Q
    |||||||||  |||||| || ||||||||||||| ||||||||||| |||||||     ||| | | |  || ||| |||||||| || ||||||||||     
T  13320000 ggggtggtacctgcacaagcactccgacgcccaagtcaggtgggaatcaaggaggtcgagagatttatgagatagaatgaacttaattagaattgtagtg 13320099  T
Q  121 gagtctcctttagataggcataagggagtgtaatg 155  Q
    ||||  |||||  ||||||||||| ||||||||||    
T  13320100 gagttccctttgtataggcataagagagtgtaatg 13320134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 3e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 21 - 172
Target Start/End: Original strand, 10553370 - 10553521
Alignment:
Q  21 ggggtggtaattgcacatgcgctccgacgcccaaatcaggtgggaaacaaggagaatctgaggtgttttggagagattgaacttacttggaattgtagta 120  Q
    |||||||||  |||||||| |||||||||||||| ||| ||||| || |||||| ||  ||| | | | ||| ||| |||| |||| || |||||||||     
T  10553370 ggggtggtacatgcacatgtgctccgacgcccaagtcatgtgggtaataaggaggatgagagatttatgggatagaatgaaattacctgaaattgtagtg 10553469  T
Q  121 gagtctcctttagataggcataagggagtgtaatgggcttcgagtcttattg 172  Q
    |||||||||||| ||||||||||||||||||||| || ||  ||||||||||    
T  10553470 gagtctcctttatataggcataagggagtgtaataggtttgaagtcttattg 10553521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0427 (Bit Score: 48; Significance: 8e-18; HSPs: 1)
Name: scaffold0427
Description:

Target: scaffold0427; HSP #1
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 21 - 180
Target Start/End: Original strand, 14939 - 15101
Alignment:
Q  21 ggggtggtaattgcacatgcgctccgacgcccaaatcaggtgggaaacaaggagaatctgaggtgtttt--ggagagattgaactta-cttggaattgta 117  Q
    |||||||||  ||||||| |||| ||||  |||| ||||||||||||||||||   | |||||||||||  ||| ||| || ||||| |||||| || ||    
T  14939 ggggtggtacctgcacatacgcttcgacatccaagtcaggtgggaaacaaggatcttgtgaggtgtttttgggatagaatggacttaacttggagtttta 15038  T
Q  118 gtagagtctcctttagataggcataagggagtgtaatgggcttcgagtcttattgggtcttac 180  Q
     | ||||| |||||| ||||||||||| |||||| |||||||| ||| |||||||||||||||    
T  15039 ctggagtcccctttatataggcataagagagtgttatgggcttggagccttattgggtcttac 15101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000008
Query Start/End: Original strand, 21 - 143
Target Start/End: Complemental strand, 16224890 - 16224768
Alignment:
Q  21 ggggtggtaattgcacatgcgctccgacgcccaaatcaggtgggaaacaaggagaatctgaggtgttttggagagattgaacttacttggaattgtagta 120  Q
    |||||||||  |||||||| ||||| || ||||| |||||||||||||||||||  | |||||| ||| ||| ||| || ||||||||| ||||| |||     
T  16224890 ggggtggtacctgcacatgtgctccaacacccaagtcaggtgggaaacaaggaggttgtgaggtttttgggatagaatggacttacttgaaattgcagtg 16224791  T
Q  121 gagtctcctttagataggcataa 143  Q
    |||| || |||| ||||||||||    
T  16224790 gagtgtcatttatataggcataa 16224768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University