View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7163_low_11 (Length: 290)

Name: NF7163_low_11
Description: NF7163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7163_low_11
NF7163_low_11
[»] chr4 (7 HSPs)
chr4 (10-277)||(37257067-37257346)
chr4 (10-150)||(37237611-37237751)
chr4 (12-80)||(37244886-37244954)
chr4 (10-150)||(37232696-37232824)
chr4 (99-183)||(37253022-37253106)
chr4 (171-235)||(37253136-37253200)
chr4 (187-235)||(37237812-37237860)
[»] chr6 (4 HSPs)
chr6 (10-80)||(14253963-14254033)
chr6 (10-80)||(14316691-14316761)
chr6 (10-84)||(14248153-14248227)
chr6 (102-163)||(14351662-14351723)
[»] scaffold1176 (2 HSPs)
scaffold1176 (10-148)||(303-441)
scaffold1176 (102-150)||(124-172)
[»] scaffold1652 (1 HSPs)
scaffold1652 (10-75)||(595-660)
[»] scaffold0902 (1 HSPs)
scaffold0902 (10-78)||(3209-3277)


Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 10 - 277
Target Start/End: Original strand, 37257067 - 37257346
Alignment:
Q  10 acatcatcaaagcagcagcgaaaaccataacagcggcagatccagcaacggtgaatctgttaaaagcggcggcggagttgtctgaaggtgaaggtgcttc 109  Q
    |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37257067 acatcatcaaagcagcggcgaaaaccataacagcagcagatccagcaacggtgaatctgttaaaagcggcggcggagttgtctgaaggtgaaggtgcttc 37257166  T
Q  110 agaaggagtagtagagatggatgatggagtaacagcaggagaaacagcgggagagtcaga------------ggaaggagaaggagcgttcttcacaggt 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||    
T  37257167 agaaggagtagtagagatggatgatggagtaacagcaggagaaacagcgggagagtcagaggaagcaggaggggaaggagaaggagcgttcttcacaggt 37257266  T
Q  198 atgggaggagatgccaccggtgagacagctgaaggagatggtgcctgagaggatttgggtggagtggcaacgggtgatat 277  Q
    | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37257267 acgggaggagatgccaccggtgagacagcggaaggagatggtgcctgagaggatttgggtggagtggcaacgggtgatat 37257346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 10 - 150
Target Start/End: Original strand, 37237611 - 37237751
Alignment:
Q  10 acatcatcaaagcagcagcgaaaaccataacagcggcagatccagcaacggtgaatctgttaaaagcggcggcggagttgtctgaaggtgaaggtgcttc 109  Q
    ||||||||||||| ||||| ||||| | | |||| |||||| | |||| |||||||||||| || ||||||  |||||| || |||||||||||||||||    
T  37237611 acatcatcaaagctgcagcaaaaacaacagcagcagcagatacggcaaaggtgaatctgttcaatgcggcgatggagttatcagaaggtgaaggtgcttc 37237710  T
Q  110 agaaggagtagtagagatggatgatggagtaacagcaggag 150  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  37237711 agaaggaggagtagagatggatgatggagtaacagcaggag 37237751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 80
Target Start/End: Original strand, 37244886 - 37244954
Alignment:
Q  12 atcatcaaagcagcagcgaaaaccataacagcggcagatccagcaacggtgaatctgttaaaagcggcg 80  Q
    ||||||||| ||||||||||||||| |||||| |||||||| ||||| ||||||||||| |||||||||    
T  37244886 atcatcaaaacagcagcgaaaaccacaacagcagcagatccggcaacagtgaatctgttgaaagcggcg 37244954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 150
Target Start/End: Original strand, 37232696 - 37232824
Alignment:
Q  10 acatcatcaaagcagcagcgaaaaccataacagcggcagatccagcaacggtgaatctgttaaaagcggcggcggagttgtctgaaggtgaaggtgcttc 109  Q
    ||||||||||||| |||||||||| || |||||| |||||||| |||||||||||||| || ||||||||| ||   ||         ||| ||||||||    
T  37232696 acatcatcaaagcggcagcgaaaatcacaacagcagcagatccggcaacggtgaatctattcaaagcggcgccg---tt---------tgatggtgcttc 37232783  T
Q  110 agaaggagtagtagagatggatgatggagtaacagcaggag 150  Q
    || ||||| ||| ||||| ||||||||||||||||||||||    
T  37232784 agcaggaggagtggagatcgatgatggagtaacagcaggag 37232824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 99 - 183
Target Start/End: Original strand, 37253022 - 37253106
Alignment:
Q  99 gaaggtgcttcagaaggagtagtagagatggatgatggagtaacagcaggagaaacagcgggagagtcagaggaaggagaaggag 183  Q
    |||||| |||| ||||||| ||| || |||||||||||||||| ||||||||| |||||||||||||| || |||| || |||||    
T  37253022 gaaggtccttcggaaggaggagtggaaatggatgatggagtaagagcaggagagacagcgggagagtcggatgaagcaggaggag 37253106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 171 - 235
Target Start/End: Original strand, 37253136 - 37253200
Alignment:
Q  171 gaaggagaaggagcgttcttcacaggtatgggaggagatgccaccggtgagacagctgaaggaga 235  Q
    |||||||| ||||||||||||||||||||||||| ||||||| |||||||| |||| || |||||    
T  37253136 gaaggagatggagcgttcttcacaggtatgggagcagatgccgccggtgagtcagcggagggaga 37253200  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 235
Target Start/End: Original strand, 37237812 - 37237860
Alignment:
Q  187 tcttcacaggtatgggaggagatgccaccggtgagacagctgaaggaga 235  Q
    |||||||||||| |||||||||||||||||||||| |||| || |||||    
T  37237812 tcttcacaggtacgggaggagatgccaccggtgagtcagcggagggaga 37237860  T

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Target: chr6 (Bit Score: 47; Significance: 7e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 10 - 80
Target Start/End: Original strand, 14253963 - 14254033
Alignment:
Q  10 acatcatcaaagcagcagcgaaaaccataacagcggcagatccagcaacggtgaatctgttaaaagcggcg 80  Q
    |||||||||||||||||||||||||||  ||||| |||||||||||||| || |||||||| |||||||||    
T  14253963 acatcatcaaagcagcagcgaaaaccacgacagcagcagatccagcaactgtaaatctgttcaaagcggcg 14254033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 80
Target Start/End: Original strand, 14316691 - 14316761
Alignment:
Q  10 acatcatcaaagcagcagcgaaaaccataacagcggcagatccagcaacggtgaatctgttaaaagcggcg 80  Q
    |||||||||||||||||||||||||||  ||||| |||||||| |||| ||| |||||||| |||||||||    
T  14316691 acatcatcaaagcagcagcgaaaaccacgacagcagcagatccggcaagggtaaatctgttcaaagcggcg 14316761  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 84
Target Start/End: Original strand, 14248153 - 14248227
Alignment:
Q  10 acatcatcaaagcagcagcgaaaaccataacagcggcagatccagcaacggtgaatctgttaaaagcggcggcgg 84  Q
    ||||||||||||||||| | |||||||  ||||| | |||||| ||||| || |||||||| |||||||||||||    
T  14248153 acatcatcaaagcagcaacaaaaaccacgacagcagtagatccggcaactgtaaatctgttcaaagcggcggcgg 14248227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 163
Target Start/End: Original strand, 14351662 - 14351723
Alignment:
Q  102 ggtgcttcagaaggagtagtagagatggatgatggagtaacagcaggagaaacagcgggaga 163  Q
    ||||||| ||| || | ||||||||  ||||||||||||||||||||||  |||||||||||    
T  14351662 ggtgcttgagatggtggagtagagactgatgatggagtaacagcaggagcgacagcgggaga 14351723  T

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Target: scaffold1176 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold1176
Description:

Target: scaffold1176; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 148
Target Start/End: Complemental strand, 441 - 303
Alignment:
Q  10 acatcatcaaagcagcagcgaaaaccataacagcggcagatccagcaacggtgaatctgttaaaagcggcggcggagttgtctgaaggtgaaggtgcttc 109  Q
    |||||||||||||||||  ||||||||  ||||| | |||||| ||||| || |||||||| ||||||||||||  |||    || | ||| |||||||     
T  441 acatcatcaaagcagcaatgaaaaccacgacagcagtagatccggcaactgtaaatctgttcaaagcggcggcgtcgtttgtggacgttgatggtgcttt 342  T
Q  110 agaaggagtagtagagatggatgatggagtaacagcagg 148  Q
    ||| ||||  ||||||||||| |||||||||| ||||||    
T  341 agatggaggggtagagatggacgatggagtaatagcagg 303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1176; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 150
Target Start/End: Complemental strand, 172 - 124
Alignment:
Q  102 ggtgcttcagaaggagtagtagagatggatgatggagtaacagcaggag 150  Q
    ||||||| ||| |||| ||||||||| ||||||||||| ||||||||||    
T  172 ggtgcttgagatggaggagtagagatcgatgatggagtcacagcaggag 124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1652 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold1652
Description:

Target: scaffold1652; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 10 - 75
Target Start/End: Complemental strand, 660 - 595
Alignment:
Q  10 acatcatcaaagcagcagcgaaaaccataacagcggcagatccagcaacggtgaatctgttaaaag 75  Q
    |||||||||||||||||| ||||||||  ||||| |||||||| ||||| || |||||||| ||||    
T  660 acatcatcaaagcagcagtgaaaaccacgacagcagcagatccggcaactgtaaatctgttcaaag 595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0902 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0902
Description:

Target: scaffold0902; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 3209 - 3277
Alignment:
Q  10 acatcatcaaagcagcagcgaaaaccataacagcggcagatccagcaacggtgaatctgttaaaagcgg 78  Q
    |||||||||||||||| | ||||||||  ||||| |||||||| ||||| || |||||||| |||||||    
T  3209 acatcatcaaagcagccgtgaaaaccacgacagcagcagatccggcaactgtaaatctgttcaaagcgg 3277  T

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