View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7163_low_13 (Length: 250)
Name: NF7163_low_13
Description: NF7163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7163_low_13 |
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| [»] scaffold0493 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 44999554 - 44999792
Alignment:
| Q |
1 |
gaatgttgtagcatggaatgcggttgttactgcttgttttaggtgtggggatgtggagggtgcttggggtttgtttgaaaggatgccggttaggaacttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
44999554 |
gaatgttgtagcatggaatgcggttgttactgcttgttttaggtgtggggatgtggagggtgcttggggtttgtttgaaaggatgccggttaggaatttg |
44999653 |
T |
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| Q |
101 |
acttcttggaatacgatgcttgcgggttatgttaaagcaggtcagctttggttggcgagaagagttttttgtgaaatgaagatgagagatgatgcttctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44999654 |
acttcttggaatacgatgcttgcgggttatgttaaagcaggtcagctttggttggcgagaagagttttttgtgaaatgaagatgagagatgatgcttctt |
44999753 |
T |
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| Q |
201 |
ggagtactatgattgttgggtttgctaaaagtggttctt |
239 |
Q |
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| T |
44999754 |
ggagtactatgattgttgggtttgctaaaagtggttctt |
44999792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0493 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: scaffold0493
Description:
Target: scaffold0493; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 2531 - 2769
Alignment:
| Q |
1 |
gaatgttgtagcatggaatgcggttgttactgcttgttttaggtgtggggatgtggagggtgcttggggtttgtttgaaaggatgccggttaggaacttg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
2531 |
gaatgttgtagcatggaatgcggttgttactgcttgttttaggtgtggg-atgtggagggtgcttggggtttgtttgaaaggatgccggttaggaatttg |
2629 |
T |
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| Q |
101 |
acttcttggaatacgatgcttgcgggttatgttaaagcaggtcagctttggttggcgagaag-agttttttgtgaaatgaagatgagagatgatgcttct |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
2630 |
acttcttggaatacgatgcttgcgggttatgttaaagcaggtcagctttggttggcgagaagtagttttttgtgaaatgaagatgagagatgatgcttct |
2729 |
T |
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| Q |
200 |
tggagtactatgattgttgggtttgctaaaagtggttctt |
239 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
2730 |
tggagtactatgattgttgggtttgctaaaagtggttctt |
2769 |
T |
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