View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7163_low_15 (Length: 242)
Name: NF7163_low_15
Description: NF7163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7163_low_15 |
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| [»] scaffold0493 (1 HSPs) |
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Alignment Details
Target: scaffold0493 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: scaffold0493
Description:
Target: scaffold0493; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 2465 - 2243
Alignment:
| Q |
1 |
aatcaaagtggttccaacaaatatatgatcatcaaacccatgacgaaaagcatgagaatgcagctgaatcccctgtctcttagaacaaacatcgttggca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
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| T |
2465 |
aatcaaagtggttccaacaaatatatgatcatcaaaaccatgacgaaaagcatgagaatgcagctgaatcccctgtctcttagaacaaccatcgttcgca |
2366 |
T |
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| Q |
101 |
atccctttaagtgcgaaggcgaaagagaaactatcagggagaagagtggggtggcgaagtaattgaatgaagggttggagggaagagagaggggtggagg |
200 |
Q |
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|| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2365 |
atgcctttaagtgtgaaggcgaaagagaaactatcagggagaagagtggggtggcgaagtaattgaatgaagggttggagggaagagagaggggtggagg |
2266 |
T |
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| Q |
201 |
aatgagagagggaacgaatgagg |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
2265 |
aatgagagagggaacgaatgagg |
2243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 44999488 - 44999266
Alignment:
| Q |
1 |
aatcaaagtggttccaacaaatatatgatcatcaaacccatgacgaaaagcatgagaatgcagctgaatcccctgtctcttagaacaaacatcgttggca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
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| T |
44999488 |
aatcaaagtggttccaacaaatatatgatcatcaaaaccatgacgaaaagcatgagaatgcagctgaatcccctgtctcttagaacaaccatcgttcgca |
44999389 |
T |
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| Q |
101 |
atccctttaagtgcgaaggcgaaagagaaactatcagggagaagagtggggtggcgaagtaattgaatgaagggttggagggaagagagaggggtggagg |
200 |
Q |
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|| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44999388 |
atgcctttaagtgtgaaggcgaaagagaaactatcagggagaagagtggggtggcgaagtaattgaatgaagggttggagggaagagagaggggtggagg |
44999289 |
T |
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| Q |
201 |
aatgagagagggaacgaatgagg |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
44999288 |
aatgagagagggaacgaatgagg |
44999266 |
T |
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