View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7163_low_20 (Length: 208)
Name: NF7163_low_20
Description: NF7163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7163_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 11 - 189
Target Start/End: Complemental strand, 31098554 - 31098388
Alignment:
| Q |
11 |
tcgaagaatatatccaaaaatgactatacataca--cacacagtttcattaaaagtgacaaataactaatagtataaatcagaaataactaatagtataa |
108 |
Q |
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| T |
31098554 |
tcgatgaatatatccaaaaatgactataaatacatacacacagtttcattaaaagtgacaaataactaatagtataaaccagaagtt-ctaatg------ |
31098462 |
T |
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| Q |
109 |
ataactaactgttaattcgaaagcatgatttatagtttaaaccagtgtggaatagctgcaaaaggaatgattaccagtgag |
189 |
Q |
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| T |
31098461 |
-------actgttaattcgaaagcatgatttatagtttaaaccagtgtggaataggtgcaaaaggaatgattaccagtgag |
31098388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 10 - 189
Target Start/End: Complemental strand, 29954878 - 29954710
Alignment:
| Q |
10 |
gtcgaagaatatatccaaaaatgactatacataca--cacacagtttcattaaaagtgacaaataactaatagtataaatcagaaataactaatagtata |
107 |
Q |
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| T |
29954878 |
gtcgatgaatatatccaaaaatgactatacatacatacacacagtttcattaaaagtgacaaataactaatagtataaaac---cataagttct------ |
29954788 |
T |
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| Q |
108 |
aataactaactgttaattcgaaagcatgatttatagtttaaaccagtgtggaatagctgcaaaaggaatgattaccagtgag |
189 |
Q |
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| T |
29954787 |
----attgactgttaattcgaaagcatgatttatagtttaaaccagtgtagaataggtgtaaaaggaatgattaccagtgag |
29954710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 76; Significance: 2e-35; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 16 - 189
Target Start/End: Complemental strand, 26210501 - 26210345
Alignment:
| Q |
16 |
gaatatatccaaaaatgactatacatacacacacagtttcattaaaagtgacaaataactaatagtataaatcagaaataactaatagtataaataacta |
115 |
Q |
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| T |
26210501 |
gaatatatccaaaaattactatacatacacaca--gtttcattaaaagtgacaaataactaatagtataaaccagaa----------gttctaatgacta |
26210414 |
T |
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| Q |
116 |
actgttaattcgaaagcatgatttatagtttaaaccagtgtggaatagctgcaaaaggaatgattaccagtgag |
189 |
Q |
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| T |
26210413 |
-----taattcaaaagcatgatttatagtttaaaccagtgtggaataggtgcaaaaggaatgattaccagtgag |
26210345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 124 - 189
Target Start/End: Original strand, 6952942 - 6953008
Alignment:
| Q |
124 |
ttcgaaagcatgatttatagtttaaaccagtgtggaata-gctgcaaaaggaatgattaccagtgag |
189 |
Q |
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| T |
6952942 |
ttcgaaagcatgatttatagtttaaaccagtgtggaatagggagcataaggaatgattaccagtgag |
6953008 |
T |
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