View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7163_low_4 (Length: 445)
Name: NF7163_low_4
Description: NF7163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7163_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 72 - 422
Target Start/End: Complemental strand, 14272369 - 14272011
Alignment:
| Q |
72 |
gtcactaatttggaaaaggatttcataatttttctctca-------tcgttcttttgctatgtttgttggaattgnnnnnnnn-gccgtttgcacataag |
163 |
Q |
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| T |
14272369 |
gtcactactttggaaaaggatttcataatttttctctcaattattctcgttcttttgctgtgtttgttggaattgaaaaaaaaagccgtttgcacataag |
14272270 |
T |
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| Q |
164 |
ctacaatctctagaatttagcttttgcgttaaaatttgtctcagaagatgtgtttaaacgtgattcttgagtgcaaactgtatactaaacacatacnnnn |
263 |
Q |
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| T |
14272269 |
ctacaatctctagaatttagcttttgcgctaaaatttgtattggaagatgtgtttaaacgtgattcttgagtgcaaactgtataccaaacacatactttt |
14272170 |
T |
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| Q |
264 |
nnnnnnnnnnnatagtagtgttttgtagccaatcaagtaaaaataaagttatttaatttcggtcaaagatagtattcaatgatgattctctgtattaaaa |
363 |
Q |
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| T |
14272169 |
ttaacttttttatagtagtgttttgtagccaatcaagtaaaaataaagttatttgatttcggtcaaagatagtattcaatgatgattctctctataaaaa |
14272070 |
T |
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| Q |
364 |
ttgtatagctattgctttgtggactttgtgattaaatttcgttgtatcaaatgacataa |
422 |
Q |
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| T |
14272069 |
ttgtatagctattgctttgtggactttgtgattaaatttctttgtatcaaataacataa |
14272011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 148 - 259
Target Start/End: Original strand, 25414826 - 25414937
Alignment:
| Q |
148 |
gccgtttgcacataagctacaatctctagaatttagcttttgcgttaaaatttgtctcagaagatgtgtttaaacgtgattcttgagtgcaaactgtata |
247 |
Q |
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| T |
25414826 |
gccgtttgcatagaagctacaatatgtagaattcagtttttgctttaaaatttgcattgaaaaatgtgtttcaacgtgattcttgaatgcaaactatgta |
25414925 |
T |
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| Q |
248 |
ctaaacacatac |
259 |
Q |
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| T |
25414926 |
ccaaacacatac |
25414937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 151 - 259
Target Start/End: Complemental strand, 41731670 - 41731562
Alignment:
| Q |
151 |
gtttgcacataagctacaatctctagaatttagcttttgcgttaaaatttgtctcagaagatgtgtttaaacgtgattcttgagtgcaaactgtatacta |
250 |
Q |
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| T |
41731670 |
gtttgcatagaagctgcaatatgtagagttcagcttttgctttaaaatttgcattggaaaatgtgtttcaacgtgattcttgaatgcaaactgtgtatca |
41731571 |
T |
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| Q |
251 |
aacacatac |
259 |
Q |
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| T |
41731570 |
aacacatac |
41731562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 259
Target Start/End: Complemental strand, 43366037 - 43365989
Alignment:
| Q |
211 |
atgtgtttaaacgtgattcttgagtgcaaactgtatactaaacacatac |
259 |
Q |
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| T |
43366037 |
atgtgtttcaacgtgattcttaaatgcaaactgtgtaccaaacacatac |
43365989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 259
Target Start/End: Original strand, 7077306 - 7077381
Alignment:
| Q |
184 |
cttttgcgttaaaatttgtctcagaagatgtgtttaaacgtgattcttgagtgcaaactgtatactaaacacatac |
259 |
Q |
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| T |
7077306 |
cttttgctttaaaatttgcattggaaaatgtgtttcaacgtgattcttaaatgcaaactgtgtaccaaacacatac |
7077381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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