View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7163_low_5 (Length: 442)
Name: NF7163_low_5
Description: NF7163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7163_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 12 - 428
Target Start/End: Original strand, 3724500 - 3724924
Alignment:
| Q |
12 |
tgtcatgaccacatttgtaaataacaaaagatgtagttaatagttatatgcctgacaacttaagaactaaa-----------tgttagatataaaaaaca |
100 |
Q |
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| T |
3724500 |
tgtcatgaccacatttgtaaataacaaaagatgtagttaatagttatatgcttgacagcttaagaactaaacgttaaatacatgttagatataaaaaaca |
3724599 |
T |
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| Q |
101 |
cgcttaacttgccctaacannnnnnnnnnnngaataaaaatttgccctaacattgcatcttttatatagccaacattttattcattcataggtgatgact |
200 |
Q |
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| T |
3724600 |
cgcttaacttgccctaacatttttttttt--gaaaaaatttttgccctaacattgcatcttttatatatccaacattttatccattcataggtgatgact |
3724697 |
T |
|
| Q |
201 |
tacattctagttaaatacaaaacctgaatacaagtagattttacactagtagtcgggtgtgtatgttagtaggtgtgacaaactaatnnnnnnnnnnnnn |
300 |
Q |
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| T |
3724698 |
tacattctagttaaatacaaaacctgaatacaagtagattttacactagtagtcgtgtgtgtatgttagtaggtgtgacaaactaat-aaaaaagaaaca |
3724796 |
T |
|
| Q |
301 |
nnnnngtgtagaaatatacatcaaatatattcctgttttcttacacctcattggaacaaaacttttaagattgttagatatttgaggaggagctaaatag |
400 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
3724797 |
aaaaagtgtagaactatacatcaaatatattcctgttttcttacacctcattggaacaaaacttttaagattgttggatatttgaggaggagctaaataa |
3724896 |
T |
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| Q |
401 |
aagtctatcatgggatgggagagaaatg |
428 |
Q |
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| T |
3724897 |
aagtctatcatgggatgggagagaaatg |
3724924 |
T |
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