View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7165_high_1 (Length: 823)

Name: NF7165_high_1
Description: NF7165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7165_high_1
NF7165_high_1
[»] scaffold0259 (2 HSPs)
scaffold0259 (212-439)||(21089-21314)
scaffold0259 (17-186)||(21313-21482)
[»] chr6 (4 HSPs)
chr6 (636-730)||(6753542-6753636)
chr6 (608-716)||(6784064-6784171)
chr6 (403-529)||(6753693-6753819)
chr6 (17-103)||(26404681-26404767)
[»] chr4 (2 HSPs)
chr4 (170-283)||(9768909-9769022)
chr4 (400-469)||(9768761-9768830)
[»] chr1 (6 HSPs)
chr1 (17-106)||(32582057-32582146)
chr1 (17-106)||(32631303-32631392)
chr1 (17-106)||(32657195-32657284)
chr1 (17-106)||(32600190-32600279)
chr1 (178-215)||(32634109-32634146)
chr1 (178-215)||(32659826-32659863)
[»] chr8 (2 HSPs)
chr8 (17-107)||(41147062-41147152)
chr8 (17-103)||(41171947-41172033)
[»] chr3 (1 HSPs)
chr3 (616-650)||(3384984-3385018)


Alignment Details
Target: scaffold0259 (Bit Score: 167; Significance: 5e-89; HSPs: 2)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 167; E-Value: 5e-89
Query Start/End: Original strand, 212 - 439
Target Start/End: Complemental strand, 21314 - 21089
Alignment:
Q  212 aaggaatttatgaaagagcattatcaaaagtataattagtgtttgtatttgaaatttatatatgaaaacatttctctaaagt-gcattatcattctataa 310  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |  ||||| ||| |||||||||||||    
T  21314 aaggaatttatgaaagagcattatcaaaagtacaattagtgtttgtatttgaaatttatatatgaaaacattttttcaaagttgcaatatcattctataa 21215  T
Q  311 aaatatttcagatccaacagaaaaacttaactatcatcgactatcataatcccatctatatcattgatgcaataatccattttaatccatacttctctct 410  Q
    |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||   |||||| |||||||  |||||||||||    
T  21214 aaatatttcagatccaacagaagatcttaactatcatcgactatcataatcccatctatatcattgatgc---aatccaatttaatcagtacttctctct 21118  T
Q  411 ttgatattgtaccatatacttctctcatt 439  Q
    |||||||||||||||||||||||||||||    
T  21117 ttgatattgtaccatatacttctctcatt 21089  T

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Target: scaffold0259; HSP #2
Raw Score: 118; E-Value: 9e-60
Query Start/End: Original strand, 17 - 186
Target Start/End: Complemental strand, 21482 - 21313
Alignment:
Q  17 actaagaagctatcaaaatcgagtgactttggagactgttgacattgatgatgacgaaatcgaattcgaatcttttggtgatggtttcggagactgttgg 116  Q
    ||||||||||||||| |||| ||||||||    ||| ||||| | ||||||||||||||||||||| |||||||||||||||||||||| | ||||||||    
T  21482 actaagaagctatcagaatcaagtgacttcaaggaccgttgatagtgatgatgacgaaatcgaatttgaatcttttggtgatggtttcgaaaactgttgg 21383  T
Q  117 ctagtttttgtgaataggcttaagtcttttccatttttactttttctaccttgaaactaatacatcacaa 186  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  21382 ctagtttttgtgaataggcttaagtcttttccatttttacttattctaccttgaaactaatacatcacaa 21313  T

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Target: chr6 (Bit Score: 83; Significance: 7e-39; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 636 - 730
Target Start/End: Complemental strand, 6753636 - 6753542
Alignment:
Q  636 tctcatacatatatttcaacaaaatcatatgtaacaacatttatccacagtcgtataaaaacaacatttcatcaaatacacaaatcacatgaaaa 730  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  6753636 tctcatacatatatttcaacaaaatcatatgtaacaacatatatccacagtcgtataaaaacaacatttcatcaaatacagaaatcacatcaaaa 6753542  T

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Target: chr6; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 608 - 716
Target Start/End: Original strand, 6784064 - 6784171
Alignment:
Q  608 atacaaatatgcaacataccaacatgtttctcatacatatatttcaacaaaatcatatgtaacaacatttatccacagtcgtataaaaacaacatttcat 707  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||| ||  || ||||| ||||||||||||||||     
T  6784064 atacaaatatgcaacataccaacatgcttctcatacatatatttcaataaaattatatgtaacaacattgatatactgtcgt-taaaaacaacatttcaa 6784162  T
Q  708 caaatacac 716  Q
    || ||||||    
T  6784163 catatacac 6784171  T

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Target: chr6; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 403 - 529
Target Start/End: Complemental strand, 6753819 - 6753693
Alignment:
Q  403 ttctctctttgatattgtaccatatacttctctcattgatactctgtgatatgtaggacaatatatacttctctc-atgatattgtattattccatccct 501  Q
    ||||||||||||||||||| ||||||||||||||||||||||| |   || | ||||| ||||||||||||||||  | ||||||||||||| || ||||    
T  6753819 ttctctctttgatattgtaacatatacttctctcattgatactttacaatctctaggataatatatacttctctcgtttatattgtattatttcagccct 6753720  T
Q  502 acgagtctagtacgtcctctaattgatg 529  Q
    | || |||||||| |||||| |||||||    
T  6753719 atgattctagtac-tcctctcattgatg 6753693  T

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Target: chr6; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 26404767 - 26404681
Alignment:
Q  17 actaagaagctatcaaaatcgagtgactttggagactgttgacattgatgatgacgaaatcgaattcgaatcttttggtgatggttt 103  Q
    |||||||| |||||||||||||||||||  | | |||||||||| ||| ||||||||| | ||||| ||||||||||||||||||||    
T  26404767 actaagaatctatcaaaatcgagtgactccgaacactgttgacaatgacgatgacgaagtggaatttgaatcttttggtgatggttt 26404681  T

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Target: chr4 (Bit Score: 82; Significance: 3e-38; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 170 - 283
Target Start/End: Complemental strand, 9769022 - 9768909
Alignment:
Q  170 aaactaatacatcacaaaaatggtggtgacatcaaggaactgaaggaatttatgaaagagcattatcaaaagtataattagtgtttgtatttgaaattta 269  Q
    ||||| |||||||| |||||||| ||||||| |||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||    
T  9769022 aaactgatacatcaaaaaaatggcggtgacaacaaggaactgaatgaatttatgaaagtgcattatcaaaagtacaattagtgtttgtatttgaaatcta 9768923  T
Q  270 tatatgaaaacatt 283  Q
    ||||||||||||||    
T  9768922 tatatgaaaacatt 9768909  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 400 - 469
Target Start/End: Complemental strand, 9768830 - 9768761
Alignment:
Q  400 tacttctctctttgatattgtaccatatacttctctcattgatactctgtgatatgtaggacaatatata 469  Q
    |||||||||||||||||||||| |||||| |||||| |||| ||||||  ||||| ||||| ||||||||    
T  9768830 tacttctctctttgatattgtaacatatatttctcttattgttactctacgatatctaggataatatata 9768761  T

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Target: chr1 (Bit Score: 70; Significance: 4e-31; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 17 - 106
Target Start/End: Complemental strand, 32582146 - 32582057
Alignment:
Q  17 actaagaagctatcaaaatcgagtgactttggagactgttgacattgatgatgacgaaatcgaattcgaatcttttggtgatggtttcgg 106  Q
    ||||||||||||||| ||||||||||||| |||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  32582146 actaagaagctatcagaatcgagtgacttcggagactgtttacagtgatgatgacgaaatcgaatttgaatcttttggtgatggtttcgg 32582057  T

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Target: chr1; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 17 - 106
Target Start/End: Complemental strand, 32631392 - 32631303
Alignment:
Q  17 actaagaagctatcaaaatcgagtgactttggagactgttgacattgatgatgacgaaatcgaattcgaatcttttggtgatggtttcgg 106  Q
    ||||||||| ||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  32631392 actaagaagttatcagaatcgagtgacttcggagactgttgacagtgatgatgacgaaatcgaatttgaatcttttggtgatggtttcgg 32631303  T

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Target: chr1; HSP #3
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 17 - 106
Target Start/End: Complemental strand, 32657284 - 32657195
Alignment:
Q  17 actaagaagctatcaaaatcgagtgactttggagactgttgacattgatgatgacgaaatcgaattcgaatcttttggtgatggtttcgg 106  Q
    ||||||||| ||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  32657284 actaagaagttatcagaatcgagtgacttcggagactgttgacagtgatgatgacgaaatcgaatttgaatcttttggtgatggtttcgg 32657195  T

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Target: chr1; HSP #4
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 17 - 106
Target Start/End: Complemental strand, 32600279 - 32600190
Alignment:
Q  17 actaagaagctatcaaaatcgagtgactttggagactgttgacattgatgatgacgaaatcgaattcgaatcttttggtgatggtttcgg 106  Q
    ||||||||| ||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||    
T  32600279 actaagaagttatcagaatcgagtgacttcggagactgttgacagtgatgatgacgaaatcgaatttggatcttttggtgatggtttcgg 32600190  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 215
Target Start/End: Original strand, 32634109 - 32634146
Alignment:
Q  178 acatcacaaaaatggtggtgacatcaaggaactgaagg 215  Q
    ||||||||||||||| ||||||||||||||| ||||||    
T  32634109 acatcacaaaaatggcggtgacatcaaggaaatgaagg 32634146  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 215
Target Start/End: Original strand, 32659826 - 32659863
Alignment:
Q  178 acatcacaaaaatggtggtgacatcaaggaactgaagg 215  Q
    ||||||||||||||| ||||||||||||||| ||||||    
T  32659826 acatcacaaaaatggcggtgacatcaaggaaatgaagg 32659863  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 41147152 - 41147062
Alignment:
Q  17 actaagaagctatcaaaatcgagtgactttggagactgttgacattgatgatgacgaaatcgaattcgaatcttttggtgatggtttcgga 107  Q
    ||||||||||||||| ||||||||||||  | |  ||||||||| ||||||||||||| | ||||| | |||||||| |||||||||||||    
T  41147152 actaagaagctatcagaatcgagtgactccgaatgctgttgacagtgatgatgacgaagtggaatttggatcttttgatgatggtttcgga 41147062  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 41172033 - 41171947
Alignment:
Q  17 actaagaagctatcaaaatcgagtgactttggagactgttgacattgatgatgacgaaatcgaattcgaatcttttggtgatggttt 103  Q
    ||||||||| ||||| |||||||||||   | ||||||||||||  || ||||||||| | ||||| | ||||||||||||||||||    
T  41172033 actaagaagttatcagaatcgagtgaccccgaagactgttgacagcgacgatgacgaagttgaatttggatcttttggtgatggttt 41171947  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 616 - 650
Target Start/End: Original strand, 3384984 - 3385018
Alignment:
Q  616 atgcaacataccaacatgtttctcatacatatatt 650  Q
    |||||||||| ||||||||||||||||||||||||    
T  3384984 atgcaacatatcaacatgtttctcatacatatatt 3385018  T

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