View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7165_high_15 (Length: 220)
Name: NF7165_high_15
Description: NF7165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7165_high_15 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 4 - 220
Target Start/End: Complemental strand, 9496091 - 9495875
Alignment:
| Q |
4 |
agagggaggccgagaaaaaccttttcctggattttcagaagggttccagtacattacaccgccaccaaagtattgattataatctataccagaaacagca |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9496091 |
agagggaggccgagaaaaaccttttcctggattttcagaagggttccagtacattacaccgccaccaaagtattgattataatctataccagaaacagca |
9495992 |
T |
|
| Q |
104 |
tgaaagtcatactcttcctctgatacatagaggttgtcaaattcatctgtgaactgtgtatttatttggtcaggtaaatctaatgtatccccagagtacc |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
9495991 |
tgaaagtcatactcttcctctgatacatagaggttgtcaaattcatctgtgaactgtgtatttatttggtcaggtaaatccaatgtatccccagagtacc |
9495892 |
T |
|
| Q |
204 |
tcctttcatcatcatga |
220 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
9495891 |
tcctttcatcatcatga |
9495875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University