View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7165_high_3 (Length: 463)
Name: NF7165_high_3
Description: NF7165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7165_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 20 - 454
Target Start/End: Original strand, 39449981 - 39450415
Alignment:
| Q |
20 |
attctaatactgatagaaacagattcacactactaattcttgtgtaacattaaagacgtaaactagagtatataattggacttacaatcttaaggtcatt |
119 |
Q |
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| T |
39449981 |
attctaatactgatagaaacagattcacactactaattcttgtgtaacattaaagacgtaaactagagtatataattggacttacaatcttaaggtcatt |
39450080 |
T |
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| Q |
120 |
taaattgtctgcaactggaagttgactgtgtccgatgacacgaagaacttcttcacgtgccatactttgccattcttgatgttttgctaatagaaggagt |
219 |
Q |
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| T |
39450081 |
taaattgtctgcaactggaagttgactgtgtccgatgacacgaagaacttcttcacgtgccatactttgccattcttgatgttttgctaatagaaggagt |
39450180 |
T |
|
| Q |
220 |
gcccaagtcaacaagttagctgttgtatcttttccagcaaagtagatggttttacattcatcaataatttcttccagccctagtttattttctccaccaa |
319 |
Q |
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| T |
39450181 |
gcccaactcaacaagttagctgttgtatcttttccagcaaagtagatggttttacattcatcaataatttcttccagccctagtttattttctccaccaa |
39450280 |
T |
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| Q |
320 |
cttcattcttgtaggaacccattaatgaatttagtacatttttggtattttctttaacactgctcttggtctcaatcagcttgcaaattgattcacgcgt |
419 |
Q |
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| T |
39450281 |
cttcattcttgtaggaacacattaatgaatttagtacatttttggtattttctttaacactgctcttggtctcaatcagcttgcaaattgattcacgcgt |
39450380 |
T |
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| Q |
420 |
ctctttatctagtctccacctatctctgttcttct |
454 |
Q |
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| T |
39450381 |
ctctttatctagtctccacctatctctgttcttct |
39450415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 145; Significance: 4e-76; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 168 - 440
Target Start/End: Complemental strand, 18719569 - 18719306
Alignment:
| Q |
168 |
ttcttcacgtgccatactttgccattcttgatgttttgctaatagaaggagtgcccaagtcaacaagttagctgttgtatcttttccagcaaagtagatg |
267 |
Q |
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| T |
18719569 |
ttcttcatgtgccttactttgccattctttatattctgctaatagaagaactccccaagtaaacaagttagatgttgtatcttttccagcaaagtatatg |
18719470 |
T |
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| Q |
268 |
gttttacattcatcaataatttcttccagccctagtttattttctccaccaacttcattcttgtaggaacccattaatgaatttagtacatttttggtat |
367 |
Q |
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| T |
18719469 |
gttttacattcatctataatttcatccagctgtagtctatcttctccaccaacttcattcttgtaggaactcattaatga---------attttttgtat |
18719379 |
T |
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| Q |
368 |
tttctttaacactgctcttggtctcaatcagcttgcaaattgattcacgcgtctctttatctagtctccacct |
440 |
Q |
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| T |
18719378 |
tttctttaacactcctcttggtctcaatcagttttcaaattgattcacgtgtctgtttatctagtctccacct |
18719306 |
T |
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