View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7165_high_5 (Length: 433)
Name: NF7165_high_5
Description: NF7165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7165_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 13 - 419
Target Start/End: Complemental strand, 1729788 - 1729382
Alignment:
| Q |
13 |
aatattgagaaagttagttaccatatccttatggattgtcattatgcaagaaaaatctggtttggatcaaacttaaacatacaattttcagatagcatag |
112 |
Q |
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| T |
1729788 |
aatattgagaaagttagttaccatatccttatggattgtcattatgcaagaaaaatctggtttggatcaaacttaaacattcaattttcagatagcatag |
1729689 |
T |
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| Q |
113 |
cccttcatttatcatttaaattagtgcactgtgtttggatttaataaagttcaataattcatagttgttgatagtaacttgtattgaaaattagctttaa |
212 |
Q |
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| T |
1729688 |
cccttcatttatcatttaaattagtgcgctgtgtttggatttaataaagttcaataattcatagttgttgatagtaacttggattgaaaattagctttaa |
1729589 |
T |
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| Q |
213 |
aagttagttactttgttgtgattttttagctaaagttgttaagctttatgcaagtattttttagctaaagttagtactttgttgttgatagtaactctta |
312 |
Q |
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| T |
1729588 |
aagttagttactttgttgtgattttttagctaaagttgttaagctttatgcaagtattttttagctaaagttagtactttgttgttgatagtaactctta |
1729489 |
T |
|
| Q |
313 |
ttgctcaaattgaatcagcaaagtagttttacactcatcataatccactttcaannnnnnnctctattgtcacaattcactcgatatttatcacaaaaga |
412 |
Q |
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|||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
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| T |
1729488 |
ttgctcaaattgaaccaacaaagtagttttacactcatcataatccactttcaatttttttctctattctcacaattcactcgatatttatcacaaaaga |
1729389 |
T |
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| Q |
413 |
agcattt |
419 |
Q |
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| T |
1729388 |
agcattt |
1729382 |
T |
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