View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7165_low_12 (Length: 304)
Name: NF7165_low_12
Description: NF7165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7165_low_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 55825425 - 55825141
Alignment:
| Q |
1 |
agaacttgttttggaagaggctaaagcagcaaaagcagcagaacaaaaagccattaaagagatgaagattatctccgacgtgcaaagtagactctcgatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55825425 |
agaacttgttttggaagaggctaaagcagcaaaagcagcagaacaaaaagccattaaagagatgaagattatctccgacgtgcaaagtagactctcgatt |
55825326 |
T |
|
| Q |
101 |
tcaaaattcagcggaaagatcaggatgtcaaaggaagagtttgagtcactgaatggaaaagtgaaggaataccaagaattggcagaaaagaaagaggcag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55825325 |
tcaaaattcagcggaaagatcaggatgtcaaaggaagagtttgagtcactgaatggaaaagtgaaggaataccaagaattggcagaaaagaaagaggcag |
55825226 |
T |
|
| Q |
201 |
ttatcatggctgagttgcaaggaatgtacacaaggaaaaatgaattagacataaaggtggaagctaacctgaaatctgttgagga |
285 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55825225 |
ttatcatggctgagttgcaaggaatgtacacaaggaaaaatgaattagacataaaggtggaagctaacctgaaatctgttgagga |
55825141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 56149556 - 56149840
Alignment:
| Q |
1 |
agaacttgttttggaagaggctaaagcagcaaaagcagcagaacaaaaagccattaaagagatgaagattatctccgacgtgcaaagtagactctcgatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56149556 |
agaacttgttttggaagaggctaaagcagcaaaagcagcagaacaaaaagccattaaagagatgaagattatctccgacgtgcaaagtagactctcgatt |
56149655 |
T |
|
| Q |
101 |
tcaaaattcagcggaaagatcaggatgtcaaaggaagagtttgagtcactgaatggaaaagtgaaggaataccaagaattggcagaaaagaaagaggcag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56149656 |
tcaaaattcagcggaaagatcaggatgtcaaaggaagagtttgagtcactgaatggaaaagtgaaggaataccaagaattggcagaaaagaaagaggcag |
56149755 |
T |
|
| Q |
201 |
ttatcatggctgagttgcaaggaatgtacacaaggaaaaatgaattagacataaaggtggaagctaacctgaaatctgttgagga |
285 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56149756 |
ttatcatggctgagttgcaaggaatgtacacaaggaaaaatgaattagacataaaggtggaagctaacctgaaatctgttgagga |
56149840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University