View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7165_low_13 (Length: 283)
Name: NF7165_low_13
Description: NF7165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7165_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 13 - 270
Target Start/End: Original strand, 26943504 - 26943761
Alignment:
| Q |
13 |
ggacatcagagtggtaacattgcaaatgagaaacaccaacctttgacaaattttgattaactccatataacaattcgggcataaatgattgagcagtttg |
112 |
Q |
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| T |
26943504 |
ggacatcagagtggtaacattgcaaatgagaaacaccaacctttgacaaattccgattaactccatataacaattcaggcataaatgattgagcagtttg |
26943603 |
T |
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| Q |
113 |
cgagagaggttcaccccatactgtgcacatgcaaaaggtttggaccatgacctgaagtaagagttaccactggtcttgagtttagttttccagatgtgca |
212 |
Q |
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| T |
26943604 |
cgagagaggttcaccccatactgtgcacatgcaaaaggtttggaccatgacctgaagtaagagttaccactggtcttgagtttagttttccagatgtgca |
26943703 |
T |
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| Q |
213 |
gaaagcaagtaatagaaggatcagtcatgaaacagaacgaagtaaaactaacttgatg |
270 |
Q |
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| T |
26943704 |
gaaagcaagtaatagaaggatcagtcatgaaacagaacgaagtaaaactaacttgatg |
26943761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 37 - 141
Target Start/End: Complemental strand, 26979304 - 26979200
Alignment:
| Q |
37 |
aatgagaaacaccaacctttgacaaattttgattaactccatataacaattcgggcataaatgattgagcagtttgcgagagaggttcaccccatactgt |
136 |
Q |
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| T |
26979304 |
aatgagtaacaccaacctttaccaaactccgatttactccgtacatcaactcaggcataaatgattgagcagtttgggagataggttcaccacatactgt |
26979205 |
T |
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| Q |
137 |
gcaca |
141 |
Q |
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| T |
26979204 |
gcaca |
26979200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 67 - 139
Target Start/End: Original strand, 27002964 - 27003036
Alignment:
| Q |
67 |
gattaactccatataacaattcgggcataaatgattgagcagtttgcgagagaggttcaccccatactgtgca |
139 |
Q |
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| T |
27002964 |
gatttactccatacatcaactcaggcataaatgattgagcagtttgggagagaggttcaccacatattgtgca |
27003036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 132
Target Start/End: Original strand, 26988158 - 26988253
Alignment:
| Q |
37 |
aatgagaaacaccaacctttgacaaattttgattaactccatataacaattcgggcataaatgattgagcagtttgcgagagaggttcaccccata |
132 |
Q |
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|||||| | ||| |||||||| |||| | |||| |||||||| | ||| || ||||||||||||||||| ||||| |||||||||||||| |||| |
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| T |
26988158 |
aatgagtaccactaacctttgccaaactccgatttactccatacatcaactcaggcataaatgattgagcggtttgggagagaggttcaccacata |
26988253 |
T |
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