View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7165_low_17 (Length: 242)
Name: NF7165_low_17
Description: NF7165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7165_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 45104018 - 45104236
Alignment:
| Q |
1 |
aatcagaagaagtgtcaagaccaaagagtataagtaataataataagaggagtttagaaccaaaagcaaaagctagtaaccaaactggaaagaagagtag |
100 |
Q |
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| T |
45104018 |
aatcagaagaagtaccaagaacaaagagtagaagtaataataataagaggagtttggaaccaaaagcaaaagctagtaaccaaactggaaagaagagtag |
45104117 |
T |
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| Q |
101 |
aagtggttctcagtgtttggatcacattatggctgagagaaaaagaagattggagctatcacaaaagttcattgcactttcagctactattcctggcttg |
200 |
Q |
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| T |
45104118 |
aagtggttctcagtgtttggatcacattatggctgagagaaaaagaagattggaactatcacaaaagttcattgcactttcagctactattcctggcttg |
45104217 |
T |
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| Q |
201 |
aagaaggtaatagttaaat |
219 |
Q |
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||||||||||||||||||| |
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| T |
45104218 |
aagaaggtaatagttaaat |
45104236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 45130644 - 45130855
Alignment:
| Q |
1 |
aatcagaagaagtgtcaagaccaaagagtataagtaataataataagaggagtttagaaccaaaagcaaaagctagtaaccaaactggaaagaagagtag |
100 |
Q |
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|
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45130644 |
aatcagaagaagtgtcaataccaaagagtagaagtaataataataagaggagtttggaaccaaaagcaaaagctagtaaccaaactggaaagaagagtag |
45130743 |
T |
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| Q |
101 |
aagtggttctcagtgtttggatcacattatggctgagagaaaaagaagattggagctatcacaaaagttcattgcactttcagctactattcctggcttg |
200 |
Q |
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|||||||||||||| | |||||||||||||||||||||||||||| ||| | || ||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
45130744 |
aagtggttctcagtatctggatcacattatggctgagagaaaaaggagactagaattatcacagaagttcattgcactttcagctactattcctggctta |
45130843 |
T |
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| Q |
201 |
aagaaggtaata |
212 |
Q |
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|||||||||||| |
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| T |
45130844 |
aagaaggtaata |
45130855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 97 - 210
Target Start/End: Complemental strand, 1841357 - 1841244
Alignment:
| Q |
97 |
gtagaagtggttctcagtgtttggatcacattatggctgagagaaaaagaagattggagctatcacaaaagttcattgcactttcagctactattcctgg |
196 |
Q |
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||||||| |||| |||||| | ||||| || ||||| ||||||||| ||||| |||| | || | || ||||||||||||||||| |||||||| || |
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| T |
1841357 |
gtagaagcagttcacagtgtattgatcatataatggcagagagaaaacgaagacaggagttgtctgagaaattcattgcactttcagccactattcccgg |
1841258 |
T |
|
| Q |
197 |
cttgaagaaggtaa |
210 |
Q |
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||||| ||||||| |
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| T |
1841257 |
cttgagcaaggtaa |
1841244 |
T |
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