View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7165_low_19 (Length: 232)

Name: NF7165_low_19
Description: NF7165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7165_low_19
NF7165_low_19
[»] chr8 (26 HSPs)
chr8 (43-219)||(11588748-11588924)
chr8 (43-219)||(37578871-37579047)
chr8 (44-219)||(34918084-34918259)
chr8 (44-219)||(43663602-43663777)
chr8 (43-219)||(15840441-15840617)
chr8 (43-219)||(24821984-24822160)
chr8 (43-219)||(17602294-17602471)
chr8 (75-219)||(39365930-39366074)
chr8 (43-219)||(26290029-26290205)
chr8 (43-219)||(26303286-26303462)
chr8 (43-219)||(26315280-26315456)
chr8 (43-219)||(3032194-3032370)
chr8 (45-219)||(5599145-5599319)
chr8 (45-219)||(5635956-5636130)
chr8 (139-219)||(16633891-16633971)
chr8 (140-219)||(26121958-26122037)
chr8 (113-219)||(8376867-8376973)
chr8 (112-217)||(34564383-34564488)
chr8 (106-219)||(35605987-35606100)
chr8 (140-219)||(42512831-42512910)
chr8 (106-205)||(23356615-23356714)
chr8 (75-219)||(3136525-3136670)
chr8 (44-184)||(26294410-26294550)
chr8 (44-184)||(26307667-26307807)
chr8 (44-190)||(12713389-12713535)
chr8 (140-219)||(5988797-5988877)
[»] chr7 (27 HSPs)
chr7 (43-219)||(21873757-21873933)
chr7 (43-219)||(7791526-7791702)
chr7 (44-219)||(47065149-47065324)
chr7 (43-219)||(32541393-32541568)
chr7 (43-219)||(42094762-42094938)
chr7 (43-219)||(8214925-8215101)
chr7 (43-219)||(40704719-40704895)
chr7 (39-219)||(43246235-43246415)
chr7 (43-219)||(46924550-46924726)
chr7 (44-219)||(32661582-32661757)
chr7 (106-219)||(10533288-10533401)
chr7 (75-219)||(34592355-34592500)
chr7 (106-219)||(46321383-46321496)
chr7 (43-219)||(39073652-39073828)
chr7 (75-219)||(40995835-40995978)
chr7 (44-219)||(19699668-19699842)
chr7 (113-217)||(7901115-7901219)
chr7 (140-219)||(40994209-40994288)
chr7 (44-219)||(35924777-35924952)
chr7 (140-219)||(38875455-38875534)
chr7 (44-219)||(27325512-27325686)
chr7 (106-219)||(26015161-26015274)
chr7 (46-219)||(38282930-38283104)
chr7 (43-219)||(21278264-21278441)
chr7 (43-190)||(25877481-25877628)
chr7 (44-191)||(47778767-47778914)
chr7 (11-43)||(328345-328377)
[»] chr2 (20 HSPs)
chr2 (43-219)||(35896402-35896578)
chr2 (43-219)||(25852649-25852825)
chr2 (43-219)||(37094710-37094886)
chr2 (36-219)||(21658567-21658749)
chr2 (43-219)||(32550874-32551050)
chr2 (43-219)||(42343608-42343782)
chr2 (43-219)||(2389931-2390106)
chr2 (44-219)||(927645-927819)
chr2 (106-219)||(43577579-43577692)
chr2 (43-219)||(39697075-39697251)
chr2 (44-219)||(3178887-3179062)
chr2 (44-219)||(13195451-13195626)
chr2 (75-219)||(1520865-1521009)
chr2 (43-219)||(44144056-44144233)
chr2 (43-219)||(34202951-34203126)
chr2 (106-219)||(40811048-40811161)
chr2 (140-219)||(1482513-1482592)
chr2 (154-219)||(27980312-27980377)
chr2 (154-219)||(28066842-28066907)
chr2 (44-219)||(10639383-10639558)
[»] chr5 (17 HSPs)
chr5 (44-219)||(6468966-6469141)
chr5 (76-219)||(25085649-25085792)
chr5 (106-219)||(25143621-25143734)
chr5 (44-219)||(33281499-33281674)
chr5 (44-219)||(37866522-37866697)
chr5 (44-219)||(38759657-38759832)
chr5 (44-219)||(43292946-43293121)
chr5 (44-219)||(31510707-31510881)
chr5 (43-219)||(4155407-4155582)
chr5 (48-219)||(9066330-9066500)
chr5 (106-219)||(29921089-29921202)
chr5 (141-219)||(13145250-13145328)
chr5 (106-219)||(19034040-19034159)
chr5 (44-219)||(19616875-19617041)
chr5 (43-191)||(43517554-43517702)
chr5 (76-179)||(24559771-24559874)
chr5 (140-179)||(24600804-24600843)
[»] chr1 (26 HSPs)
chr1 (44-219)||(2481923-2482098)
chr1 (44-219)||(34270034-34270209)
chr1 (44-219)||(34276269-34276444)
chr1 (44-219)||(44722552-44722727)
chr1 (43-219)||(11172616-11172791)
chr1 (44-212)||(15941497-15941665)
chr1 (43-219)||(24317826-24318001)
chr1 (48-219)||(40535923-40536094)
chr1 (44-219)||(39568649-39568823)
chr1 (75-219)||(2137663-2137807)
chr1 (43-219)||(28852099-28852275)
chr1 (43-219)||(39983017-39983192)
chr1 (44-219)||(52043667-52043841)
chr1 (43-219)||(6653756-6653931)
chr1 (43-219)||(26163792-26163967)
chr1 (43-215)||(33009979-33010150)
chr1 (44-219)||(50728502-50728677)
chr1 (47-222)||(20582240-20582414)
chr1 (44-219)||(42948837-42949012)
chr1 (44-219)||(49823846-49824021)
chr1 (44-219)||(14246512-14246687)
chr1 (113-219)||(51676555-51676660)
chr1 (43-219)||(40400671-40400848)
chr1 (43-219)||(52025297-52025472)
chr1 (140-219)||(18909821-18909900)
chr1 (43-182)||(13234591-13234730)
[»] chr6 (10 HSPs)
chr6 (43-219)||(7141860-7142036)
chr6 (43-219)||(18894391-18894567)
chr6 (43-219)||(25332149-25332325)
chr6 (43-219)||(6625980-6626156)
chr6 (43-219)||(6167248-6167423)
chr6 (44-219)||(13889307-13889482)
chr6 (106-212)||(29121690-29121796)
chr6 (44-184)||(25331634-25331773)
chr6 (44-219)||(3095193-3095368)
chr6 (140-219)||(29629858-29629938)
[»] chr4 (26 HSPs)
chr4 (43-219)||(19873352-19873528)
chr4 (44-219)||(20434759-20434934)
chr4 (44-219)||(28405712-28405887)
chr4 (36-219)||(55214861-55215044)
chr4 (44-219)||(43829521-43829695)
chr4 (43-219)||(42723406-42723582)
chr4 (43-219)||(52912425-52912601)
chr4 (43-219)||(55220514-55220690)
chr4 (43-219)||(56363350-56363526)
chr4 (43-219)||(20738394-20738569)
chr4 (44-219)||(42349347-42349522)
chr4 (44-219)||(56017714-56017889)
chr4 (43-219)||(23894460-23894636)
chr4 (44-219)||(38291157-38291333)
chr4 (43-219)||(46563749-46563924)
chr4 (44-219)||(37233438-37233614)
chr4 (44-219)||(55182793-55182968)
chr4 (44-219)||(39539734-39539908)
chr4 (43-219)||(614474-614651)
chr4 (43-219)||(1356317-1356494)
chr4 (113-219)||(53874379-53874485)
chr4 (106-219)||(52839050-52839163)
chr4 (47-219)||(10541383-10541557)
chr4 (43-178)||(5098717-5098852)
chr4 (176-219)||(25858309-25858352)
chr4 (44-131)||(31710531-31710618)
[»] chr3 (22 HSPs)
chr3 (44-219)||(22781074-22781249)
chr3 (44-219)||(33967566-33967741)
chr3 (44-219)||(37970938-37971113)
chr3 (43-215)||(10840658-10840830)
chr3 (43-215)||(41070535-41070707)
chr3 (44-219)||(32236947-32237122)
chr3 (43-219)||(33711948-33712123)
chr3 (44-215)||(36430967-36431138)
chr3 (44-219)||(38871772-38871947)
chr3 (75-219)||(25711575-25711719)
chr3 (44-219)||(4044042-4044217)
chr3 (113-219)||(20834845-20834951)
chr3 (140-219)||(4515366-4515445)
chr3 (76-219)||(24395846-24395989)
chr3 (44-219)||(20656519-20656694)
chr3 (44-182)||(7149232-7149370)
chr3 (43-219)||(20048955-20049132)
chr3 (44-219)||(40585389-40585564)
chr3 (47-219)||(672720-672883)
chr3 (106-219)||(10999078-10999192)
chr3 (44-219)||(53974929-53975092)
chr3 (140-179)||(6267664-6267703)
[»] scaffold0062 (1 HSPs)
scaffold0062 (44-219)||(41174-41349)
[»] scaffold0438 (1 HSPs)
scaffold0438 (43-219)||(1366-1542)
[»] scaffold0368 (1 HSPs)
scaffold0368 (44-219)||(14510-14685)
[»] scaffold0391 (1 HSPs)
scaffold0391 (140-219)||(4659-4738)
[»] scaffold0007 (1 HSPs)
scaffold0007 (140-219)||(156453-156522)


Alignment Details
Target: chr8 (Bit Score: 87; Significance: 8e-42; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 43 - 219
Target Start/End: Complemental strand, 11588924 - 11588748
Alignment:
Q  43 agagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnnttta 142  Q
    |||||||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||        |||    
T  11588924 agagtttttctatttacaccccatgtttttctggttacacccaaattttcttaaaagttttttataataccaaaattgcccttttatataaattttctta 11588825  T
Q  143 aaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  11588824 aaaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 11588748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 43 - 219
Target Start/End: Complemental strand, 37579047 - 37578871
Alignment:
Q  43 agagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnnttta 142  Q
    |||||||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||        |||    
T  37579047 agagtttttctatttacaccccatgtttttctggttacacccaaattttcttaaaagttttttataataccaaaattgcccttttatataaattttctta 37578948  T
Q  143 aaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    |||| |||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  37578947 aaactctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 37578871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 44 - 219
Target Start/End: Complemental strand, 34918259 - 34918084
Alignment:
Q  44 gagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaa 143  Q
    ||||||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||| ||||||||||        ||||    
T  34918259 gagtttttctatttacaccccatgtttttctggttacacccaaattttcttaaaatttttttataataccaaaattgtccttttatataaattttcttaa 34918160  T
Q  144 aaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    |||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  34918159 aaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 34918084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 44 - 219
Target Start/End: Original strand, 43663602 - 43663777
Alignment:
Q  44 gagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaa 143  Q
    ||||||||||||||||||| ||||       |||||||||||||||||||||||        |||||  ||||||||| |||||||||        ||||    
T  43663602 gagtttttctatttacaccccatgtttttctggttacacccaaattttcttaaaatttttttataatatcaaaattgctcttttatataaattttcttaa 43663701  T
Q  144 aaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  43663702 aaccctaattttattcattgtcggtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 43663777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 43 - 219
Target Start/End: Complemental strand, 15840617 - 15840441
Alignment:
Q  43 agagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnnttta 142  Q
    |||||||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||  ||||||||        |||    
T  15840617 agagtttttctatttacaccccatgtttttctggttacacccaaattttcttaaaagttttttataataccaaaattgcttttttatataaattttctta 15840518  T
Q  143 aaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  15840517 aaaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 15840441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 43 - 219
Target Start/End: Original strand, 24821984 - 24822160
Alignment:
Q  43 agagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnnttta 142  Q
    |||||||||||||||||||| |||        |||||||||||||||||||||||        |||||  |||||||||||||||||||        |||    
T  24821984 agagtttttctatttacaccccatatttttctggttacacccaaattttcttaaaaaaaatttataatatcaaaattgcccttttatataaattttctta 24822083  T
Q  143 aaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    ||||||||||||||||||||||||||||||||||||||||||  ||||| |||||||||||||||||||||||||||    
T  24822084 aaaccctaattttattcattgtcggtgagtttcaccctctttcgccccacaaagcgatcgatcaaacaatttgatgt 24822160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 43 - 219
Target Start/End: Complemental strand, 17602471 - 17602294
Alignment:
Q  43 agagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnnttta 142  Q
    |||||||||||||||||||| ||||       |||||||||||||||||||||||        ||||| | ||||||||||||||||||        |||    
T  17602471 agagtttttctatttacaccccatgtttttctggttacacccaaattttcttaaaagttttttataatactaaaattgcccttttatataaattttctta 17602372  T
Q  143 aaaccctaattttattcattgtcggtgagtttcaccctctttta-ccccataaagcgatcgatcaaacaatttgatgt 219  Q
    ||||||||||||||||||||||| |||||||||||||||||| | ||||| |||||||||||||||||||||||||||    
T  17602371 aaaccctaattttattcattgtcagtgagtttcaccctctttcacccccacaaagcgatcgatcaaacaatttgatgt 17602294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 75 - 219
Target Start/End: Complemental strand, 39366074 - 39365930
Alignment:
Q  75 ggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagttt 174  Q
    |||||||||||||||||||||||        ||||| | ||||||||||||||||||        |||||||||||||||||||||||||| ||||||||    
T  39366074 ggttacacccaaattttcttaaaatttttttataatactaaaattgcccttttatataaattttcttaaaaccctaattttattcattgtcagtgagttt 39365975  T
Q  175 caccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    |||||||||| |||||| |||||||||||||||||||||||||||    
T  39365974 caccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 39365930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 43 - 219
Target Start/End: Original strand, 26290029 - 26290205
Alignment:
Q  43 agagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnnttta 142  Q
    |||||||||||||||||||| ||||       ||||||||||||||||||||||         ||||| ||||||||||||||||||||        |||    
T  26290029 agagtttttctatttacaccccatgtttttctggttacacccaaattttcttaatttttttttataataccaaaattgcccttttatataaattttctta 26290128  T
Q  143 aaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||| |||| ||||||||||||||| ||||||    
T  26290129 aaaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagagatcgatcaaacaatctgatgt 26290205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 43 - 219
Target Start/End: Original strand, 26303286 - 26303462
Alignment:
Q  43 agagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnnttta 142  Q
    |||||||||||||||||||| ||||       ||||||||||||||||||||||         ||||| ||||||||||||||||||||        |||    
T  26303286 agagtttttctatttacaccccatgtttttctggttacacccaaattttcttaatttttttttataataccaaaattgcccttttatataaattttctta 26303385  T
Q  143 aaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||| |||| ||||||||||||||| ||||||    
T  26303386 aaaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagagatcgatcaaacaatctgatgt 26303462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 43 - 219
Target Start/End: Original strand, 26315280 - 26315456
Alignment:
Q  43 agagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnnttta 142  Q
    |||||||||||||||||||| ||||       ||||||||||||||||||||||         ||||| ||||||||||||||||||||        |||    
T  26315280 agagtttttctatttacaccccatgtttttctggttacacccaaattttcttaatttttttttataataccaaaattgcccttttatataaattttctta 26315379  T
Q  143 aaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||| |||| ||||||||||||||| ||||||    
T  26315380 aaaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagagatcgatcaaacaatctgatgt 26315456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 43 - 219
Target Start/End: Original strand, 3032194 - 3032370
Alignment:
Q  43 agagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnnttta 142  Q
    |||||||||||||||||||| ||||       ||||| ||||||||||||||||         ||||| |||||| |||||||||||||        |||    
T  3032194 agagtttttctatttacaccccatgtttttctggttatacccaaattttcttaatttttttttataataccaaaactgcccttttatataaattttctta 3032293  T
Q  143 aaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    |||| |||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  3032294 aaactctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 3032370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 45 - 219
Target Start/End: Original strand, 5599145 - 5599319
Alignment:
Q  45 agtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaa 144  Q
    |||||||||||||||||| ||||       ||||| || ||||||||||||||        ||||| ||||||||  ||||||||||        |||||    
T  5599145 agtttttctatttacaccccatgtttttctggttatactcaaattttcttaaaagttttttataataccaaaattatccttttatataaattttcttaaa 5599244  T
Q  145 accctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  5599245 accctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 5599319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 45 - 219
Target Start/End: Complemental strand, 5636130 - 5635956
Alignment:
Q  45 agtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaa 144  Q
    |||||||||||||||||| ||||       ||||| || ||||||||||||||        ||||| ||||||||  ||||||||||        |||||    
T  5636130 agtttttctatttacaccccatgtttttctggttatactcaaattttcttaaaagttttttataataccaaaattatccttttatataaattttcttaaa 5636031  T
Q  145 accctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    ||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  5636030 accctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 5635956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 139 - 219
Target Start/End: Original strand, 16633891 - 16633971
Alignment:
Q  139 tttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  16633891 tttaaaaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 16633971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 140 - 219
Target Start/End: Original strand, 26121958 - 26122037
Alignment:
Q  140 ttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    |||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  26121958 ttaaaaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 26122037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 113 - 219
Target Start/End: Complemental strand, 8376973 - 8376867
Alignment:
Q  113 caaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaat 212  Q
    |||||||||||||||||||        |||||||||||||||||||||||||| | |||||||||||||||| |||||| ||||||||||||||||||||    
T  8376973 caaaattgcccttttatataaattttcttaaaaccctaattttattcattgtcagcgagtttcaccctctttcaccccacaaagcgatcgatcaaacaat 8376874  T
Q  213 ttgatgt 219  Q
    |||||||    
T  8376873 ttgatgt 8376867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 112 - 217
Target Start/End: Original strand, 34564383 - 34564488
Alignment:
Q  112 ccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaa 211  Q
    ||||||||||||||||||||        ||||||||||||||||||||||||||  ||||||||||||||||| ||||||||||| ||||||||||||||    
T  34564383 ccaaaattgcccttttatataaattttcttaaaaccctaattttattcattgtcaatgagtttcaccctctttcaccccataaagggatcgatcaaacaa 34564482  T
Q  212 tttgat 217  Q
    ||||||    
T  34564483 tttgat 34564488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 106 - 219
Target Start/End: Complemental strand, 35606100 - 35605987
Alignment:
Q  106 ataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatc 205  Q
    ||||| |||||||| |||||||||||        |||||||| ||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||    
T  35606100 ataataccaaaattccccttttatataaattttcttaaaaccttaattttattcattgtcagtgaatttcaccctctttcaccccataaagcgatcgatc 35606001  T
Q  206 aaacaatttgatgt 219  Q
    ||||||||||||||    
T  35606000 aaacaatttgatgt 35605987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 140 - 219
Target Start/End: Complemental strand, 42512910 - 42512831
Alignment:
Q  140 ttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    ||||||| |||||||||||||||||| |||||||||||||| ||| |||||| |||||||||||||||||||||||||||    
T  42512910 ttaaaactctaattttattcattgtcagtgagtttcaccctatttcaccccacaaagcgatcgatcaaacaatttgatgt 42512831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 106 - 205
Target Start/End: Original strand, 23356615 - 23356714
Alignment:
Q  106 ataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatc 205  Q
    ||||| ||||||||||||||||||||        |||||||| ||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||    
T  23356615 ataataccaaaattgcccttttatataaattttcttaaaaccttaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatc 23356714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 75 - 219
Target Start/End: Original strand, 3136525 - 3136670
Alignment:
Q  75 ggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagttt 174  Q
    |||||||||||||||||||||||        |||||  |||||||||||||||||||        ||||||||||||||||||||||||||  |||||||    
T  3136525 ggttacacccaaattttcttaaaagttttttataatatcaaaattgcccttttatataaattttcttaaaaccctaattttattcattgtcactgagttt 3136624  T
Q  175 caccctcttttaccccataaagcgatc--gatcaaacaatttgatgt 219  Q
    |||||||||| ||||||  ||||||||  || |||||||||||||||    
T  3136625 caccctctttcacccca-caagcgatcatgagcaaacaatttgatgt 3136670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 44 - 184
Target Start/End: Original strand, 26294410 - 26294550
Alignment:
Q  44 gagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaa 143  Q
    ||||||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||        ||||    
T  26294410 gagtttttctatttacaccccatgtttttctggttacacccaaattttcttaaattttttttataataccaaaattgcccttttatataaattttcttaa 26294509  T
Q  144 aaccctaattttattcattgtcggtgagtttcaccctcttt 184  Q
    ||||||||||||||||||||||  ||||||||||| |||||    
T  26294510 aaccctaattttattcattgtcactgagtttcaccatcttt 26294550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 44 - 184
Target Start/End: Original strand, 26307667 - 26307807
Alignment:
Q  44 gagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaa 143  Q
    ||||||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||        ||||    
T  26307667 gagtttttctatttacaccccatgtttttctggttacacccaaattttcttaaattttttttataataccaaaattgcccttttatataaattttcttaa 26307766  T
Q  144 aaccctaattttattcattgtcggtgagtttcaccctcttt 184  Q
    ||||||||||||||||||||||  ||||||||||| |||||    
T  26307767 aaccctaattttattcattgtcactgagtttcaccatcttt 26307807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 44 - 190
Target Start/End: Original strand, 12713389 - 12713535
Alignment:
Q  44 gagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaa 143  Q
    ||||||||||||||||||| ||||       |||||||||||||||||||||||        |||||  |||||||| ||||||||||        ||||    
T  12713389 gagtttttctatttacaccccatgtttttctggttacacccaaattttcttaaaagttttttataatatcaaaattgtccttttatataaattttcttaa 12713488  T
Q  144 aaccctaattttattcattgtcggtgagtttcaccctcttttacccc 190  Q
    ||||||||||||||||||||||  ||||||||||||||||| |||||    
T  12713489 aaccctaattttattcattgtcactgagtttcaccctctttcacccc 12713535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 140 - 219
Target Start/End: Complemental strand, 5988877 - 5988797
Alignment:
Q  140 ttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgat--cgatcaaacaatttgatgt 219  Q
    ||||||||||||||||||||||||||  ||||||||||||||||| ||||||  |||||||  ||| |||||||||||||||    
T  5988877 ttaaaaccctaattttattcattgtcattgagtttcaccctctttcacccca-caagcgatcacgagcaaacaatttgatgt 5988797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 8e-42; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 43 - 219
Target Start/End: Original strand, 21873757 - 21873933
Alignment:
Q  43 agagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnnttta 142  Q
    |||| ||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||        |||    
T  21873757 agagattttctatttacaccccatgtttttctggttacacccaaattttcttaaaacttttttataataccaaaattgcccttttatataaattttctta 21873856  T
Q  143 aaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  21873857 aaaccctaattttattcattgtcggtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 21873933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 43 - 219
Target Start/End: Complemental strand, 7791702 - 7791526
Alignment:
Q  43 agagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnnttta 142  Q
    |||||||||||||||||||| ||||       |||||||||||||||||||||||        |||||  |||||||||||||||||||        |||    
T  7791702 agagtttttctatttacaccccatgattttctggttacacccaaattttcttaaaagttttttataatatcaaaattgcccttttatataaattttctta 7791603  T
Q  143 aaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  7791602 aaaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 7791526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 44 - 219
Target Start/End: Original strand, 47065149 - 47065324
Alignment:
Q  44 gagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaa 143  Q
    ||||||||||||||||||| ||||       |||||||||||||||||||| ||        ||||| ||||||||||||||||||||        ||||    
T  47065149 gagtttttctatttacaccccatgtttttctggttacacccaaattttctttaaaaaaaattataataccaaaattgcccttttatataaattttcttaa 47065248  T
Q  144 aaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  47065249 aaccctaattttattcattgtcagtgagtttcaccctcttttaccccacaaagcgattgatcaaacaatttgatgt 47065324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 43 - 219
Target Start/End: Original strand, 32541393 - 32541568
Alignment:
Q  43 agagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnnttta 142  Q
    |||||||||||||||||||| ||||       ||||||||||||||||||||||         ||||| ||||||||||||||||||||        |||    
T  32541393 agagtttttctatttacaccccatgtttttctggttacacccaaattttcttaa-ttttttttataataccaaaattgcccttttatataaattttctta 32541491  T
Q  143 aaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  32541492 aaaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 32541568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 43 - 219
Target Start/End: Original strand, 42094762 - 42094938
Alignment:
Q  43 agagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnnttta 142  Q
    |||||||||||||||||||| ||||       | ||||||||||||||| |||||        ||||| ||||||||||||||||||||        |||    
T  42094762 agagtttttctatttacaccccatgtttttctgattacacccaaatttttttaaaagttttttataataccaaaattgcccttttatataaattttctta 42094861  T
Q  143 aaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  42094862 aaaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 42094938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 43 - 219
Target Start/End: Original strand, 8214925 - 8215101
Alignment:
Q  43 agagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnnttta 142  Q
    |||||||||||||||||||| ||||        ||||||||||||||||||||||        ||||| ||||||||||||||||||||        |||    
T  8214925 agagtttttctatttacaccccatgtttttctagttacacccaaattttcttaaaagttttttataataccaaaattgcccttttatataaattttctta 8215024  T
Q  143 aaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    ||||| ||||||||| ||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  8215025 aaaccttaattttatacattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 8215101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 43 - 219
Target Start/End: Original strand, 40704719 - 40704895
Alignment:
Q  43 agagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnnttta 142  Q
    |||||||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||        |||    
T  40704719 agagtttttctatttacaccccatgtttttctggttacacccaaattttcttaaaaaaaatt-ataataccaaaattgcccttttatataaattttctta 40704817  T
Q  143 aaaccctaattttattcattgtcggtgagtttcaccctctttta-ccccataaagcgatcgatcaaacaatttgatgt 219  Q
    ||||||||||||||||||||||| |||||||||||||||||| | ||||| |||||||||||||||||||||||||||    
T  40704818 aaaccctaattttattcattgtcagtgagtttcaccctctttcacccccacaaagcgatcgatcaaacaatttgatgt 40704895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 39 - 219
Target Start/End: Original strand, 43246235 - 43246415
Alignment:
Q  39 aatgagagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnn 138  Q
    |||||||||||||||||||||||| ||||       ||| ||||| |||||||||||||        |||||  |||||||| ||||||||||           
T  43246235 aatgagagtttttctatttacaccccatgtttttctggtcacacctaaattttcttaaaaaaattttataatatcaaaattgtccttttatataaatttt 43246334  T
Q  139 tttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
     |||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  43246335 cttaaaaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 43246415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 43 - 219
Target Start/End: Complemental strand, 46924726 - 46924550
Alignment:
Q  43 agagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnnttta 142  Q
    ||||||||||||||||||||  |||       ||||| |||||||||||||||||        ||||| ||||||||||||||||||||        |||    
T  46924726 agagtttttctatttacaccctatgtttttctggttatacccaaattttcttaaattatctttataataccaaaattgcccttttatataaattttctta 46924627  T
Q  143 aaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||| |||| ||||||||||||||||||||||    
T  46924626 aaaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagtgatcgatcaaacaatttgatgt 46924550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 44 - 219
Target Start/End: Original strand, 32661582 - 32661757
Alignment:
Q  44 gagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaa 143  Q
    ||||||||||||||||||| ||||       |||||||||||||||||||||||        ||||| |||||||||||||| |||||        ||||    
T  32661582 gagtttttctatttacaccccatgtttttctggttacacccaaattttcttaaaaaaaatttataataccaaaattgcccttctatataaattttcttaa 32661681  T
Q  144 aaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    || ||||||||| ||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  32661682 aagcctaattttgttcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 32661757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 106 - 219
Target Start/End: Complemental strand, 10533401 - 10533288
Alignment:
Q  106 ataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatc 205  Q
    ||||| ||||||||||||||||||||        |||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||    
T  10533401 ataataccaaaattgcccttttatataaattttcttaaaaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatc 10533302  T
Q  206 aaacaatttgatgt 219  Q
    ||||||||||||||    
T  10533301 aaacaatttgatgt 10533288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 75 - 219
Target Start/End: Complemental strand, 34592500 - 34592355
Alignment:
Q  75 ggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnnttt-aaaaccctaattttattcattgtcggtgagtt 173  Q
    ||||||||||||||||||||||         ||||| ||||||||||||||||||||       ||| |||||||||||||||||||||||| |||||||    
T  34592500 ggttacacccaaattttcttaatttttttttataataccaaaattgcccttttatataatttttttttaaaaccctaattttattcattgtcagtgagtt 34592401  T
Q  174 tcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    ||||||||||| |||||| |||||||||||||||||||||||||||    
T  34592400 tcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 34592355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 106 - 219
Target Start/End: Original strand, 46321383 - 46321496
Alignment:
Q  106 ataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatc 205  Q
    ||||| ||||||||||||||||||||        |||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||    
T  46321383 ataataccaaaattgcccttttatataaattttcttaaaaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatc 46321482  T
Q  206 aaacaatttgatgt 219  Q
    ||||||||||||||    
T  46321483 aaacaatttgatgt 46321496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 43 - 219
Target Start/End: Original strand, 39073652 - 39073828
Alignment:
Q  43 agagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnnttta 142  Q
    |||||||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||        |||    
T  39073652 agagtttttctatttacaccccatgtttttctggttacacccaaattttcttaaaagttttttataataccaaaattgcccttttatataaattttctta 39073751  T
Q  143 aaaccctaattttattcattgtcggtgagtttcaccctcttttaccc-cataaagcgatcgatcaaacaatttgatgt 219  Q
    |||||||||||||||||||||||  ||||||||||||||||| |||| || |||||||||||||||||||||||||||    
T  39073752 aaaccctaattttattcattgtca-tgagtttcaccctctttcaccctcacaaagcgatcgatcaaacaatttgatgt 39073828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 75 - 219
Target Start/End: Complemental strand, 40995978 - 40995835
Alignment:
Q  75 ggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagttt 174  Q
    |||||||||||||||||||||||        ||||| ||||||||| ||||||||||        |||||||||||||||||||||||||| ||||||||    
T  40995978 ggttacacccaaattttcttaaaaaaaatt-ataataccaaaattgtccttttatataaattttcttaaaaccctaattttattcattgtcagtgagttt 40995880  T
Q  175 caccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    |||||||||| |||||| |||||||||||||||||||||||||||    
T  40995879 caccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 40995835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 44 - 219
Target Start/End: Complemental strand, 19699842 - 19699668
Alignment:
Q  44 gagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaa 143  Q
    ||||||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||        ||||    
T  19699842 gagtttttctatttacaccccatgtttttctggttacacccaaattttcttaaaaaaaaattataataccaaaattgcccttttatataaattttcttaa 19699743  T
Q  144 aaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    |||||||||||||||||||||| |||||||||| ||||||| |||||| ||||| || ||||||||||||||||||    
T  19699742 aaccctaattttattcattgtcagtgagtttca-cctctttcaccccacaaagctattgatcaaacaatttgatgt 19699668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 113 - 217
Target Start/End: Complemental strand, 7901219 - 7901115
Alignment:
Q  113 caaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaat 212  Q
    |||||||||||||||||||        |||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||    
T  7901219 caaaattgcccttttatataaattttcttaaaaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaat 7901120  T
Q  213 ttgat 217  Q
    |||||    
T  7901119 ttgat 7901115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 140 - 219
Target Start/End: Original strand, 40994209 - 40994288
Alignment:
Q  140 ttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||    
T  40994209 ttaaaaccctaattttattcattgtcggtgagtttcaccctctttcaccccacaaagcgaacgatcaaacaatttgatgt 40994288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 44 - 219
Target Start/End: Complemental strand, 35924952 - 35924777
Alignment:
Q  44 gagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaa 143  Q
    ||||||||||||||||||| ||||       |||||||||||||||||||||||        |||||  |||||||||||||||||||        ||||    
T  35924952 gagtttttctatttacaccccatgtttttctggttacacccaaattttcttaaattttttttataatatcaaaattgcccttttatataaattttcttaa 35924853  T
Q  144 aaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    |||||||||||||||||||||| |||||||||||| ||||| |||||| ||| |||||||| ||| ||||||||||    
T  35924852 aaccctaattttattcattgtcagtgagtttcaccatctttcaccccacaaaacgatcgataaaaaaatttgatgt 35924777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 140 - 219
Target Start/End: Original strand, 38875455 - 38875534
Alignment:
Q  140 ttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    |||||||||||||||||||||||||| |||| ||||||||||||| |||||| |||||||||||||||||||||||||||    
T  38875455 ttaaaaccctaattttattcattgtcagtgaatttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 38875534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 44 - 219
Target Start/End: Complemental strand, 27325686 - 27325512
Alignment:
Q  44 gagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaa 143  Q
    ||||||||||||||||||| ||||       ||||||||||||||||||||||         ||||| ||||||||| ||||||||||        ||||    
T  27325686 gagtttttctatttacaccccatgtttttctggttacacccaaattttcttaa-ttttttttataataccaaaattgtccttttatataaattttcttaa 27325588  T
Q  144 aaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    |||| ||||||||||||||||| |||||||||||||||||| |||||| |||| |||||||||||||||| |||||    
T  27325587 aaccataattttattcattgtcagtgagtttcaccctctttcaccccacaaagtgatcgatcaaacaattcgatgt 27325512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 106 - 219
Target Start/End: Original strand, 26015161 - 26015274
Alignment:
Q  106 ataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatc 205  Q
    ||||| |||||||| |||||||||||        |||||||||||||||||||||||||| |||||||||||||||||| || ||| ||||||||| |||    
T  26015161 ataataccaaaattacccttttatataaattttcttaaaaccctaattttattcattgtcagtgagtttcaccctctttcactccacaaagcgatcaatc 26015260  T
Q  206 aaacaatttgatgt 219  Q
    ||||||||||||||    
T  26015261 aaacaatttgatgt 26015274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 46 - 219
Target Start/End: Original strand, 38282930 - 38283104
Alignment:
Q  46 gtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaa 145  Q
    ||||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||        ||||||    
T  38282930 gtttttctatttacaccccatgtttgtctggttacacccaaattttcttaaaagttttttataataccaaaattgcccttttatataaattttcttaaaa 38283029  T
Q  146 ccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgat--cgatcaaacaatttgatgt 219  Q
    ||||||||||||||||||||  ||||||||||||||||| ||||||  |||||||  ||| |||||||||||||||    
T  38283030 ccctaattttattcattgtcactgagtttcaccctctttcacccca-caagcgatcacgagcaaacaatttgatgt 38283104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 43 - 219
Target Start/End: Original strand, 21278264 - 21278441
Alignment:
Q  43 agagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnnttta 142  Q
    |||||||||||||||||||| ||||       ||||||||| |||||||||||||        ||||| ||||||||||||||||||||        |||    
T  21278264 agagtttttctatttacaccccatgtttttctggttacacctaaattttcttaaaatttttttataataccaaaattgcccttttatataaattttctta 21278363  T
Q  143 aaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgat--cgatcaaacaatttgatgt 219  Q
    |||||||||||||||||||||||  ||||||||||||||||| ||||||  |||||||  ||| |||||||||||||||    
T  21278364 aaaccctaattttattcattgtcactgagtttcaccctctttcacccca-caagcgatcacgagcaaacaatttgatgt 21278441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 43 - 190
Target Start/End: Complemental strand, 25877628 - 25877481
Alignment:
Q  43 agagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnnttta 142  Q
    |||||||||||||||||||||||||       |||||||||||||||||||||||        ||||| ||||||||| ||||||||||        |||    
T  25877628 agagtttttctatttacacctcatgtttttctggttacacccaaattttcttaaaagttttttataataccaaaattgtccttttatataaattttctta 25877529  T
Q  143 aaaccctaattttattcattgtcggtgagtttcaccctcttttacccc 190  Q
    |||||||||||||||||||||||  ||||||||||||||||| |||||    
T  25877528 aaaccctaattttattcattgtcactgagtttcaccctctttcacccc 25877481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 44 - 191
Target Start/End: Original strand, 47778767 - 47778914
Alignment:
Q  44 gagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaa 143  Q
    ||||||||||||||||||| |||        |||||||||||||||||||||||        ||||| |||||||||  |||||||||        ||||    
T  47778767 gagtttttctatttacaccccatatttttctggttacacccaaattttcttaaaagttttttataataccaaaattgtacttttatataaattttcttaa 47778866  T
Q  144 aaccctaattttattcattgtcggtgagtttcaccctcttttacccca 191  Q
    ||||||||||||||||||||||  ||||||||||||||||| ||||||    
T  47778867 aaccctaattttattcattgtcactgagtttcaccctctttcacccca 47778914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 43
Target Start/End: Complemental strand, 328377 - 328345
Alignment:
Q  11 agcagagacatggagagggagagagaagaatga 43  Q
    ||||||||||||||||| |||||||||||||||    
T  328377 agcagagacatggagagagagagagaagaatga 328345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 8e-42; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 43 - 219
Target Start/End: Complemental strand, 35896578 - 35896402
Alignment:
Q  43 agagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnnttta 142  Q
    |||||||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||        |||    
T  35896578 agagtttttctatttacaccccatgtttttctggttacacccaaattttcttaaaagttttttataataccaaaattgcccttttatataaattttctta 35896479  T
Q  143 aaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  35896478 aaaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 35896402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 43 - 219
Target Start/End: Original strand, 25852649 - 25852825
Alignment:
Q  43 agagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnnttta 142  Q
    |||||||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||        |||    
T  25852649 agagtttttctatttacaccccatgtttttctggttacacccaaattttcttaaattttttttataataccaaaattgcccttttatataaattttctta 25852748  T
Q  143 aaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    ||||||||||||||||||||||| ||||||||||| |||||| |||||| |||||||||||||||||||||||||||    
T  25852749 aaaccctaattttattcattgtcagtgagtttcactctctttcaccccacaaagcgatcgatcaaacaatttgatgt 25852825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 43 - 219
Target Start/End: Complemental strand, 37094886 - 37094710
Alignment:
Q  43 agagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnnttta 142  Q
    |||||||||||||||| ||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||        |||    
T  37094886 agagtttttctatttataccccatgtttttctggttacacccaaattttcttaaatttgttttataataccaaaattgcccttttatataaattttctta 37094787  T
Q  143 aaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  37094786 aaaccttaattttattcattgtcagtgagtttcaccctcttttaccccacaaagcgatcgatcaaacaatttgatgt 37094710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 36 - 219
Target Start/End: Complemental strand, 21658749 - 21658567
Alignment:
Q  36 aagaatgagagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnn 135  Q
    |||||| |||||||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||        
T  21658749 aagaataagagtttttctatttacaccccatgtttttctggttacacccaaattttcttaaattttttt-ataataccaaaattgcccttttatataatt 21658651  T
Q  136 nnntttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
        |||||||||||||||||||||||||| |||||||||||||||||| ||| || |||||||||||||||||||||||||||    
T  21658650 tttcttaaaaccctaattttattcattgtcagtgagtttcaccctctttcaccacacaaagcgatcgatcaaacaatttgatgt 21658567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 43 - 219
Target Start/End: Original strand, 32550874 - 32551050
Alignment:
Q  43 agagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnnttta 142  Q
    |||||||||||||||||||| |||        |||||||||||||||||||||||        ||||| ||||||||||| ||||||||        |||    
T  32550874 agagtttttctatttacaccccatatttttctggttacacccaaattttcttaaaagttttttataataccaaaattgcctttttatataaattttctta 32550973  T
Q  143 aaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  32550974 aaaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 32551050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 43 - 219
Target Start/End: Complemental strand, 42343782 - 42343608
Alignment:
Q  43 agagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnnttta 142  Q
    ||||||||||||||||||||| |||       ||||||||||||||||||||||         ||||| ||||||||||||||||||||        |||    
T  42343782 agagtttttctatttacaccttatgtttttctggttacacccaaattttcttaa--tttttttataataccaaaattgcccttttatatcatttttctta 42343685  T
Q  143 aaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  42343684 aaaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 42343608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 43 - 219
Target Start/End: Original strand, 2389931 - 2390106
Alignment:
Q  43 agagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnnttta 142  Q
    |||||||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||        |||    
T  2389931 agagtttttctatttacaccccatgtttttctggttacacccaaattttcttaaattttttt-ataataccaaaattgcccttttatataatttttctta 2390029  T
Q  143 aaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||| || |||||||||||||||||||||||||||    
T  2390030 aaaccctaattttattcattgtcagtgagtttcaccctctttcaccacacaaagcgatcgatcaaacaatttgatgt 2390106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 44 - 219
Target Start/End: Complemental strand, 927819 - 927645
Alignment:
Q  44 gagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaa 143  Q
    ||||||||||||||||||| ||||       ||||||||||||||||||||||         ||||| ||||||||||||||||||||        ||||    
T  927819 gagtttttctatttacaccccatgtttttctggttacacccaaattttcttaa-ttttttttataataccaaaattgcccttttatataaattttcttaa 927721  T
Q  144 aaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  927720 aaccctaattttattcattgtcaatgagtttcaccctcttttaccccacaaagcgatctatcaaacaatttgatgt 927645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 106 - 219
Target Start/End: Complemental strand, 43577692 - 43577579
Alignment:
Q  106 ataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatc 205  Q
    ||||| ||||||||||||||||||||        |||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||    
T  43577692 ataataccaaaattgcccttttatataaattttcttaaaaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatc 43577593  T
Q  206 aaacaatttgatgt 219  Q
    ||||||||||||||    
T  43577592 aaacaatttgatgt 43577579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 43 - 219
Target Start/End: Original strand, 39697075 - 39697251
Alignment:
Q  43 agagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnnttta 142  Q
    ||||||||||||||||||||||||        ||||||| |||||||||||||||        ||||| ||||||||| | ||||||||        |||    
T  39697075 agagtttttctatttacacctcatatttttctggttacatccaaattttcttaaattttttttataataccaaaattgtcattttatataaattttctta 39697174  T
Q  143 aaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||| |||||||||||||||||    
T  39697175 aaaccctaattttattcattgtcggtgagttttaccctctttcaccccacaaagcgatcaatcaaacaatttgatgt 39697251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 44 - 219
Target Start/End: Complemental strand, 3179062 - 3178887
Alignment:
Q  44 gagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaa 143  Q
    ||||||||||||||||||| ||||       ||||||| ||||||||| ||||         ||||| ||||||||||||||||||||        ||||    
T  3179062 gagtttttctatttacaccccatgtttttctggttacatccaaattttattaatttttttttataataccaaaattgcccttttatataaattttcttaa 3178963  T
Q  144 aaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    |||||||||||||||||||||| |||||||||||||||||| |||||| ||| |||||||||||||||||||||||    
T  3178962 aaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaaacgatcgatcaaacaatttgatgt 3178887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 44 - 219
Target Start/End: Original strand, 13195451 - 13195626
Alignment:
Q  44 gagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaa 143  Q
    |||||||| |||||||||| ||||       ||||||||| ||||||||||||         ||||| |||||||| |||||||||||        ||||    
T  13195451 gagtttttttatttacaccccatgtttttctggttacacctaaattttcttaatttttttttataataccaaaatttcccttttatataaattttcttaa 13195550  T
Q  144 aaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    |||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  13195551 aaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 13195626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 75 - 219
Target Start/End: Complemental strand, 1521009 - 1520865
Alignment:
Q  75 ggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagttt 174  Q
    |||||||||||||||||||||||        ||||| ||||||||| ||||||||||        |||||||||||||||||||||||||  ||||||||    
T  1521009 ggttacacccaaattttcttaaattttttttataataccaaaattgtccttttatataaattttcttaaaaccctaattttattcattgttagtgagttt 1520910  T
Q  175 caccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    |||||||||| |||||| |||||||||||||| ||||||||||||    
T  1520909 caccctctttcaccccacaaagcgatcgatcatacaatttgatgt 1520865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 43 - 219
Target Start/End: Complemental strand, 44144233 - 44144056
Alignment:
Q  43 agagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnn-ataattccaaaattgcccttttatatnnnnnnnttt 141  Q
    |||||||||||||||||||| ||||       ||||||||| |||||||||||||         ||||| ||||||||||||||||||||        ||    
T  44144233 agagtttttctatttacaccccatgtttttctggttacacctaaattttcttaaatttttttttataataccaaaattgcccttttatataaattttctt 44144134  T
Q  142 aaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    ||||||||||||||||||||||||  ||||||||||||||||| |||||| || ||||||||||||||||||||||||    
T  44144133 aaaaccctaattttattcattgtcaatgagtttcaccctctttcaccccacaaggcgatcgatcaaacaatttgatgt 44144056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 43 - 219
Target Start/End: Complemental strand, 34203126 - 34202951
Alignment:
Q  43 agagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnnttta 142  Q
    |||||||||||||||||||| ||||       ||||||||||||||||||||||         ||||| | |||||| |||||||||||        |||    
T  34203126 agagtttttctatttacaccccatgtttttctggttacacccaaattttcttaa-ttttttttataatactaaaatttcccttttatataaattttctta 34203028  T
Q  143 aaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    ||||||||||||||||||||||| |||||||||||||||||| | |||| |||||||||||||||||||||||||||    
T  34203027 aaaccctaattttattcattgtcagtgagtttcaccctctttcatcccacaaagcgatcgatcaaacaatttgatgt 34202951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 106 - 219
Target Start/End: Original strand, 40811048 - 40811161
Alignment:
Q  106 ataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatc 205  Q
    ||||| ||||||||||||||||||||        |||||||| |||||||||| |||||| |||||||||||||||||| |||||| |||||||||||||    
T  40811048 ataataccaaaattgcccttttatataaattttcttaaaaccataattttatttattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatc 40811147  T
Q  206 aaacaatttgatgt 219  Q
    ||||||||||||||    
T  40811148 aaacaatttgatgt 40811161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 140 - 219
Target Start/End: Complemental strand, 1482592 - 1482513
Alignment:
Q  140 ttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    |||||||||||||||||||||||||| |||| ||||||||||||| |||||| |||||||||||||||||||||||||||    
T  1482592 ttaaaaccctaattttattcattgtcagtgaatttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 1482513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 154 - 219
Target Start/End: Original strand, 27980312 - 27980377
Alignment:
Q  154 ttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    ||||||||| || |||||||||||||||||| | |||| |||||||| ||||||||||||||||||    
T  27980312 ttattcattctcagtgagtttcaccctctttcatcccacaaagcgatggatcaaacaatttgatgt 27980377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 154 - 219
Target Start/End: Original strand, 28066842 - 28066907
Alignment:
Q  154 ttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    ||||||||| || |||||||||||||||||| | |||| |||||||| ||||||||||||||||||    
T  28066842 ttattcattctcagtgagtttcaccctctttcatcccacaaagcgatggatcaaacaatttgatgt 28066907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 44 - 219
Target Start/End: Complemental strand, 10639558 - 10639383
Alignment:
Q  44 gagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaa 143  Q
    ||||||||||||||||||  ||||       ||||||| | |||||||||||||        ||||| ||||||||| ||||||||||        ||||    
T  10639558 gagtttttctatttacactccatgtttttctggttacatctaaattttcttaaaagttttttataataccaaaattgtccttttatataaattttcttaa 10639459  T
Q  144 aaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgat--cgatcaaacaatttgatgt 219  Q
    ||||||||||||||||||||||  |||||||||||||| || ||||||  |||||||  |||||||||||||||||||    
T  10639458 aaccctaattttattcattgtcactgagtttcaccctc-ttcacccca-caagcgatcacgatcaaacaatttgatgt 10639383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 86; Significance: 3e-41; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 44 - 219
Target Start/End: Original strand, 6468966 - 6469141
Alignment:
Q  44 gagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaa 143  Q
    ||||||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||        ||||    
T  6468966 gagtttttctatttacaccccatgtttttctggttacacccaaattttcttaaaagttttttataataccaaaattgcccttttatataaattttcttaa 6469065  T
Q  144 aaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    |||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  6469066 aaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 6469141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 76 - 219
Target Start/End: Complemental strand, 25085792 - 25085649
Alignment:
Q  76 gttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttc 175  Q
    |||||||||||||||| |||||        ||||||||||||||||||||||||||       ||||||||||||||||||||||||||| |||||||||    
T  25085792 gttacacccaaatttttttaaaagttttttataattccaaaattgcccttttatataattttttttaaaaccctaattttattcattgtcagtgagtttc 25085693  T
Q  176 accctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    ||||||||| |||||| |||||||||||| ||||||||||||||    
T  25085692 accctctttcaccccacaaagcgatcgattaaacaatttgatgt 25085649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 106 - 219
Target Start/End: Complemental strand, 25143734 - 25143621
Alignment:
Q  106 ataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatc 205  Q
    ||||||||||||||||||||||||||       ||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||     
T  25143734 ataattccaaaattgcccttttatataattttttttaaaaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatt 25143635  T
Q  206 aaacaatttgatgt 219  Q
    ||||||||||||||    
T  25143634 aaacaatttgatgt 25143621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 44 - 219
Target Start/End: Complemental strand, 33281674 - 33281499
Alignment:
Q  44 gagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaa 143  Q
    |||||||||||||||||||  |||       |||||||||||||||||||||||        |||||  |||||||||||||||||||        ||||    
T  33281674 gagtttttctatttacaccctatgtttttctggttacacccaaattttcttaaaaaaaaattataatatcaaaattgcccttttatataaattttcttaa 33281575  T
Q  144 aaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    |||||||||||||||||||||| |||||||||||||||||| | ||||||||||||| ||||||||||||||||||    
T  33281574 aaccctaattttattcattgtcagtgagtttcaccctctttcatcccataaagcgatagatcaaacaatttgatgt 33281499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 44 - 219
Target Start/End: Complemental strand, 37866697 - 37866522
Alignment:
Q  44 gagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaa 143  Q
    ||||||||||||||||||| ||||       ||||||| ||||||||||||||         |||||  |||||||||||||||||||       |||||    
T  37866697 gagtttttctatttacaccccatgtttttctggttacatccaaattttcttaatttttttttataatatcaaaattgcccttttatataattttttttaa 37866598  T
Q  144 aaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    |||||||||||||||||||||| ||||||||||| |||||| |||||| |||||||||||||||||||||||||||    
T  37866597 aaccctaattttattcattgtcagtgagtttcactctctttcaccccacaaagcgatcgatcaaacaatttgatgt 37866522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 44 - 219
Target Start/End: Original strand, 38759657 - 38759832
Alignment:
Q  44 gagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaa 143  Q
    ||||||||||||||||||| ||||       | ||||||| |||||||||||||        ||||| ||||||||||||||||||||        ||||    
T  38759657 gagtttttctatttacaccccatgtttttctgattacacctaaattttcttaaaagttttttataataccaaaattgcccttttatataaattttcttaa 38759756  T
Q  144 aaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    ||||||||||||||||||||||  ||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  38759757 aaccctaattttattcattgtcaatgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 38759832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 44 - 219
Target Start/End: Original strand, 43292946 - 43293121
Alignment:
Q  44 gagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaa 143  Q
    ||||||||||||||||||| ||||        ||||||||||||||||||||||        |||||  |||||||||||||||||||        ||||    
T  43292946 gagtttttctatttacaccccatgtttttctagttacacccaaattttcttaaaaaaaatttataatatcaaaattgcccttttatataaattttcttaa 43293045  T
Q  144 aaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    |||||||||||||||||||||| |||||||||||| |||||  |||||||||||||||||||||||||||||||||    
T  43293046 aaccctaattttattcattgtcagtgagtttcaccttctttccccccataaagcgatcgatcaaacaatttgatgt 43293121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 44 - 219
Target Start/End: Original strand, 31510707 - 31510881
Alignment:
Q  44 gagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaa 143  Q
    |||||||||||||||| || ||||       |||||||||||||||||||||||        |||||  |||||||||||||||||||        ||||    
T  31510707 gagtttttctatttacgccccatgtttttctggttacacccaaattttcttaaattttttt-ataatatcaaaattgcccttttatataaattttcttaa 31510805  T
Q  144 aaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    ||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  31510806 aactctaattttattcattgtcagtgagtttcaccctctttcaccccataaagcgatcgatcaaacaatttgatgt 31510881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 43 - 219
Target Start/End: Original strand, 4155407 - 4155582
Alignment:
Q  43 agagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnnttta 142  Q
    |||||||||||||||||||| ||||       | ||||| |||||||||||||||        ||||| ||||||||| ||||||||||        |||    
T  4155407 agagtttttctatttacaccccatgtttttctgattacatccaaattttcttaaattttttt-ataataccaaaattgtccttttatataaattttctta 4155505  T
Q  143 aaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  4155506 aaaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 4155582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 48 - 219
Target Start/End: Complemental strand, 9066500 - 9066330
Alignment:
Q  48 ttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaacc 147  Q
    ||||||||||||||| ||||       |||||||||||||||||||||||        ||||| | ||||||||||||||||||        ||| ||||    
T  9066500 ttttctatttacaccccatgtttttctggttacacccaaattttcttaaattttttt-ataatacaaaaattgcccttttatataaattttcttagaacc 9066402  T
Q  148 ctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  9066401 ctaattttattcattgtcagtgagtttcaccctcttttaccccacaaagcgatcgatcaaataatttgatgt 9066330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 106 - 219
Target Start/End: Complemental strand, 29921202 - 29921089
Alignment:
Q  106 ataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatc 205  Q
    ||||| ||||||||| ||||||||||        |||||||||||||||||||||||| | |||||||||||||||||| |||||| |||||||||||||    
T  29921202 ataataccaaaattgtccttttatataaattttcttaaaaccctaattttattcattgccagtgagtttcaccctctttcaccccacaaagcgatcgatc 29921103  T
Q  206 aaacaatttgatgt 219  Q
    ||||||||||||||    
T  29921102 aaacaatttgatgt 29921089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 141 - 219
Target Start/End: Original strand, 13145250 - 13145328
Alignment:
Q  141 taaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    |||| |||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  13145250 taaagccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 13145328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 106 - 219
Target Start/End: Original strand, 19034040 - 19034159
Alignment:
Q  106 ataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcg------gtgagtttcaccctcttttaccccataaagcga 199  Q
    ||||| |||||||||| |||||||||       |||||||||||||||||||||||||||       |||||||||||||||||| |||||| |||||||    
T  19034040 ataataccaaaattgctcttttatataaatttttttaaaaccctaattttattcattgtcattgttagtgagtttcaccctctttcaccccacaaagcga 19034139  T
Q  200 tcgatcaaacaatttgatgt 219  Q
    ||||||||||||||||||||    
T  19034140 tcgatcaaacaatttgatgt 19034159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 44 - 219
Target Start/End: Original strand, 19616875 - 19617041
Alignment:
Q  44 gagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaa 143  Q
    ||||||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||        ||||    
T  19616875 gagtttttctatttacaccccatgtttttctggttacacccaaattttcttaaaagttttttataataccaaaattgcccttttatataaattttcttaa 19616974  T
Q  144 aaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    |||||||||||||||||||    |||||||||||||||||| ||||||     | |||||||||||||||||||||    
T  19616975 aaccctaattttattcatt----gtgagtttcaccctctttcacccca-----caatcgatcaaacaatttgatgt 19617041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 43 - 191
Target Start/End: Original strand, 43517554 - 43517702
Alignment:
Q  43 agagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnnttta 142  Q
    ||||||||||||||||||| ||||        |||||||||||||||||||||||        ||||| ||||||||| ||||||||||        |||    
T  43517554 agagtttttctatttacacttcatatttttctggttacacccaaattttcttaaaagttttttataataccaaaattgtccttttatataaattttctta 43517653  T
Q  143 aaaccctaattttattcattgtcggtgagtttcaccctcttttacccca 191  Q
    |||||||||||||||||||||||  ||||||||||||||||| ||||||    
T  43517654 aaaccctaattttattcattgtcactgagtttcaccctctttcacccca 43517702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 76 - 179
Target Start/End: Complemental strand, 24559874 - 24559771
Alignment:
Q  76 gttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttc 175  Q
    ||||||||||||||||||||||        ||||| ||||||||| ||| ||||||        |||||||||||||||||||||||||  |||||||||    
T  24559874 gttacacccaaattttcttaaattttttttataataccaaaattgtcctattatataaattttcttaaaaccctaattttattcattgtaagtgagtttc 24559775  T
Q  176 accc 179  Q
    ||||    
T  24559774 accc 24559771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 179
Target Start/End: Complemental strand, 24600843 - 24600804
Alignment:
Q  140 ttaaaaccctaattttattcattgtcggtgagtttcaccc 179  Q
    |||||||||||||||||||||||||  |||||||||||||    
T  24600843 ttaaaaccctaattttattcattgtaagtgagtttcaccc 24600804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 86; Significance: 3e-41; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 44 - 219
Target Start/End: Original strand, 2481923 - 2482098
Alignment:
Q  44 gagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaa 143  Q
    ||||||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||        ||||    
T  2481923 gagtttttctatttacaccccatgtttttctggttacacccaaattttcttaaattttttttataataccaaaattgcccttttatataaattttcttaa 2482022  T
Q  144 aaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    |||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  2482023 aaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 2482098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 44 - 219
Target Start/End: Original strand, 34270034 - 34270209
Alignment:
Q  44 gagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaa 143  Q
    ||||||||||||||||||| ||||       ||||||| |||||||||||||||        ||||| ||||||||||||||||||||        ||||    
T  34270034 gagtttttctatttacaccccatgtttttctggttacatccaaattttcttaaattttttttataataccaaaattgcccttttatataaattttcttaa 34270133  T
Q  144 aaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    |||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  34270134 aaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 34270209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 44 - 219
Target Start/End: Original strand, 34276269 - 34276444
Alignment:
Q  44 gagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaa 143  Q
    ||||||||||||||||||| ||||       ||||||| |||||||||||||||        ||||| ||||||||||||||||||||        ||||    
T  34276269 gagtttttctatttacaccccatgtttttctggttacatccaaattttcttaaattttttttataataccaaaattgcccttttatataaattttcttaa 34276368  T
Q  144 aaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    |||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  34276369 aaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 34276444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 44 - 219
Target Start/End: Complemental strand, 44722727 - 44722552
Alignment:
Q  44 gagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaa 143  Q
    ||||||||||||||||| | ||||       |||||||||||||||||||||||        |||||  |||||||||||||||||||       |||||    
T  44722727 gagtttttctatttacatcccatgtttttctggttacacccaaattttcttaaattttttttataatatcaaaattgcccttttatataaatttttttaa 44722628  T
Q  144 aaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    |||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  44722627 aaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 44722552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 43 - 219
Target Start/End: Original strand, 11172616 - 11172791
Alignment:
Q  43 agagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnnttta 142  Q
    |||||||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||        |||    
T  11172616 agagtttttctatttacacc-catgtttttttggttacacccaaattttcttaaaagttttttataataccaaaattgcccttttatataaattttctta 11172714  T
Q  143 aaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||  |||||||||||||||||||||||||||    
T  11172715 aaaccctaattttattcattgtcagtgagtttcaccctctttcacccctcaaagcgatcgatcaaacaatttgatgt 11172791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 44 - 212
Target Start/End: Complemental strand, 15941665 - 15941497
Alignment:
Q  44 gagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaa 143  Q
    ||||||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||        ||||    
T  15941665 gagtttttctatttacaccccatgtttttctggttacacccaaattttcttaaaatttttttataataccaaaattgcccttttatataaattttcttaa 15941566  T
Q  144 aaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaat 212  Q
    |||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||    
T  15941565 aaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaat 15941497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 43 - 219
Target Start/End: Complemental strand, 24318001 - 24317826
Alignment:
Q  43 agagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnnttta 142  Q
    |||||||||||||||||||| ||||       ||||||||||||||||||||||         ||||| ||||||||||||||||||||        |||    
T  24318001 agagtttttctatttacaccccatgtttttctggttacacccaaattttcttaa-ttttttttataataccaaaattgcccttttatataaattttctta 24317903  T
Q  143 aaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  24317902 aaaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 24317826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 48 - 219
Target Start/End: Original strand, 40535923 - 40536094
Alignment:
Q  48 ttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaacc 147  Q
    ||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||        ||||||||    
T  40535923 ttttctatttacaccccatgtttttctggttacacccaaattttcttaaaagttttttataataccaaaattgcccttttatataaattttcttaaaacc 40536022  T
Q  148 ctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    ||||||||||||||||||  ||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  40536023 ctaattttattcattgtcaatgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 40536094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 44 - 219
Target Start/End: Original strand, 39568649 - 39568823
Alignment:
Q  44 gagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaa 143  Q
    ||||||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||| ||||||||        ||||    
T  39568649 gagtttttctatttacaccccatgtttttctggttacacccaaattttcttaaaaaaaatt-ataataccaaaattgcctttttatataaattttcttaa 39568747  T
Q  144 aaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    |||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  39568748 aaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 39568823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 75 - 219
Target Start/End: Original strand, 2137663 - 2137807
Alignment:
Q  75 ggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagttt 174  Q
    |||||||||||||||||||||||        ||||| ||||||||| ||||||||||        |||||||||||||||||||||||||| ||||||||    
T  2137663 ggttacacccaaattttcttaaaaaaaaattataataccaaaattgtccttttatataaattttcttaaaaccctaattttattcattgtcagtgagttt 2137762  T
Q  175 caccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    |||||||||| |||||| |||||||||||||||||||||||||||    
T  2137763 caccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 2137807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 43 - 219
Target Start/End: Original strand, 28852099 - 28852275
Alignment:
Q  43 agagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnnttta 142  Q
    |||||||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||| ||        |||    
T  28852099 agagtttttctatttacaccccatgtttttctggttacacccaaattttcttaaaaaaaaattataataccaaaattgcccttttacataaattttctta 28852198  T
Q  143 aaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    ||||||||||||||||||||||| |||||||||| ||||||| |||||| |||||||| ||||||||||||||||||    
T  28852199 aaaccctaattttattcattgtcagtgagtttcaacctctttcaccccacaaagcgattgatcaaacaatttgatgt 28852275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 43 - 219
Target Start/End: Complemental strand, 39983192 - 39983017
Alignment:
Q  43 agagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnnttta 142  Q
    |||||||||||||||||||| |||        ||||||||||||||||| |||||        ||||| ||||||||||||||||||||        |||    
T  39983192 agagtttttctatttacaccccatatttttctggttacacccaaatttttttaaaaattttt-ataataccaaaattgcccttttatataaattttctta 39983094  T
Q  143 aaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  39983093 aaaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 39983017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 44 - 219
Target Start/End: Original strand, 52043667 - 52043841
Alignment:
Q  44 gagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaa 143  Q
    ||||||||||||||||||| |||        |||||||||||||||||||||||        ||||| ||||||||||||||||||||        |||     
T  52043667 gagtttttctatttacaccccatatttttctggttacacccaaattttcttaaattttttt-ataataccaaaattgcccttttatataaattttcttag 52043765  T
Q  144 aaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  52043766 aaccctaattttattcattgtcagtgagtttcaccctcttttaccccacaaagcgatcgatcaaataatttgatgt 52043841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 43 - 219
Target Start/End: Complemental strand, 6653931 - 6653756
Alignment:
Q  43 agagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnnttta 142  Q
    |||||||||||||||||||| ||||       ||||||||||||||||||||||         ||||| | ||||||||||||||||||        |||    
T  6653931 agagtttttctatttacaccccatgtttttctggttacacccaaattttcttaa-ttttttttataatactaaaattgcccttttatataaattttctta 6653833  T
Q  143 aaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    ||||||||||||||||||||||| |||||||||||||||| | |||||| |||||||||||||||||||||||||||    
T  6653832 aaaccctaattttattcattgtcagtgagtttcaccctctgtcaccccacaaagcgatcgatcaaacaatttgatgt 6653756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 43 - 219
Target Start/End: Original strand, 26163792 - 26163967
Alignment:
Q  43 agagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnnttta 142  Q
    |||||||||||||||||||| ||||       ||||||||||||||||||||||         ||||  ||||||||||| ||||||||        |||    
T  26163792 agagtttttctatttacaccccatgtttttctggttacacccaaattttcttaa-ttttttttataacaccaaaattgcctttttatataaattttctta 26163890  T
Q  143 aaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  26163891 aaaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 26163967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 43 - 215
Target Start/End: Original strand, 33009979 - 33010150
Alignment:
Q  43 agagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnnttta 142  Q
    |||||||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||| ||        |||    
T  33009979 agagtttttctatttacacc-catgtttttttggttacacccaaattttcttaaattttttttataataccaaaattgcccttttacataaattttctta 33010077  T
Q  143 aaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttg 215  Q
    ||||||||||||||||||||||| |||| ||||||||||||| |||||| |||||||||||||||||||||||    
T  33010078 aaaccctaattttattcattgtcagtgaatttcaccctctttcaccccacaaagcgatcgatcaaacaatttg 33010150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 44 - 219
Target Start/End: Complemental strand, 50728677 - 50728502
Alignment:
Q  44 gagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnnttt-a 142  Q
    ||||||||||||||||||| ||||       ||||||||||||||||||||||         ||||| ||||||||||||||| ||||       ||| |    
T  50728677 gagtttttctatttacaccccatgtttttctggttacacccaaattttcttaatttttttttataataccaaaattgcccttt-atataattttttttta 50728579  T
Q  143 aaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  50728578 aaaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 50728502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 47 - 222
Target Start/End: Complemental strand, 20582414 - 20582240
Alignment:
Q  47 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 146  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||| ||||||||||       || |||||    
T  20582414 tttttctatttacaccccatgtttttctggttacacccaaattttcttaaaagttttttataataccaaaattgtccttttatataaatttctt-aaaac 20582316  T
Q  147 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgtcca 222  Q
    ||||||||||| | ||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  20582315 cctaattttatacgttgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgtcca 20582240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 44 - 219
Target Start/End: Complemental strand, 42949012 - 42948837
Alignment:
Q  44 gagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaa 143  Q
    ||||||||||||||||||| ||||       ||||||||||||||||||||||         ||||| ||||||||||||||||||||        || |    
T  42949012 gagtttttctatttacaccccatgtttttttggttacacccaaattttcttaatttttttttataataccaaaattgcccttttatataaattttcttta 42948913  T
Q  144 aaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    || ||||||||||||||||||| |||||||||||||||||| |||||| ||| |||||||||||||||||||||||    
T  42948912 aatcctaattttattcattgtcagtgagtttcaccctctttcaccccacaaaacgatcgatcaaacaatttgatgt 42948837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 44 - 219
Target Start/End: Complemental strand, 49824021 - 49823846
Alignment:
Q  44 gagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaa 143  Q
    ||||||||||||||||||| |||        ||||| |||||||||||||||||        ||||| ||||||||||| ||||||||        ||||    
T  49824021 gagtttttctatttacaccccatatttttctggttatacccaaattttcttaaattttttttataataccaaaattgcctttttatataaattttcttaa 49823922  T
Q  144 aaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    |||||||||||||||| ||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  49823921 aaccctaattttattcgttgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 49823846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 44 - 219
Target Start/End: Original strand, 14246512 - 14246687
Alignment:
Q  44 gagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaa 143  Q
    |||||||| |||||||||| ||||       ||||||| ||||||||| |||||        ||||| ||||||||||||||||||||        ||||    
T  14246512 gagtttttttatttacaccccatgtttttctggttacatccaaatttttttaaaagttttttataataccaaaattgcccttttatataaattttcttaa 14246611  T
Q  144 aaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    |||||||||||||||||||| | |||||||||| ||||||| |||||| |||||||||||||||||||||||||||    
T  14246612 aaccctaattttattcattgccagtgagtttcatcctctttcaccccacaaagcgatcgatcaaacaatttgatgt 14246687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 113 - 219
Target Start/End: Original strand, 51676555 - 51676660
Alignment:
Q  113 caaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaat 212  Q
    |||||||||||||||||||        |||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  51676555 caaaattgcccttttatataaattttcttaaaacc-taattttattcattgtcagtgagtttcaccctctttcaccccataaagcgatcgatcaaacaat 51676653  T
Q  213 ttgatgt 219  Q
    |||||||    
T  51676654 ttgatgt 51676660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 43 - 219
Target Start/End: Complemental strand, 40400848 - 40400671
Alignment:
Q  43 agagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnnttta 142  Q
    |||||||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||        |||    
T  40400848 agagtttttctatttacaccccatgtttttttggttacacccaaattttcttaaaagttttttataataccaaaattgcccttttatataaattttctta 40400749  T
Q  143 aaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgat--cgatcaaacaatttgatgt 219  Q
    |||||||||||||||||||||||  ||||||||||||||||| ||||||  |||||||  ||| |||||||||||||||    
T  40400748 aaaccctaattttattcattgtcactgagtttcaccctctttcacccca-caagcgatcacgagcaaacaatttgatgt 40400671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 43 - 219
Target Start/End: Complemental strand, 52025472 - 52025297
Alignment:
Q  43 agagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnnttta 142  Q
    |||||||||||||||||| | ||||       ||||||| |||||||||||||||        ||||| ||||||||||||||||||||        |||    
T  52025472 agagtttttctatttacatcccatgtttttctggttacatccaaattttcttaaaaaaaatt-ataataccaaaattgcccttttatataaattttctta 52025374  T
Q  143 aaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    |||||||||||||||| |||||| |||||||||||||||||| || ||| |||||||| ||||||||||||||||||    
T  52025373 aaaccctaattttatttattgtcagtgagtttcaccctctttcactccacaaagcgattgatcaaacaatttgatgt 52025297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 140 - 219
Target Start/End: Complemental strand, 18909900 - 18909821
Alignment:
Q  140 ttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    |||||| | ||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  18909900 ttaaaatcttaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 18909821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 43 - 182
Target Start/End: Original strand, 13234591 - 13234730
Alignment:
Q  43 agagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnnttta 142  Q
    |||||||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||        |||    
T  13234591 agagtttttctatttacaccccatgtttttctggttacacccaaattttcttaaaagttttttataataccaaaattgcccttttatataaattttctta 13234690  T
Q  143 aaaccctaattttattcattgtcggtgagtttcaccctct 182  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  13234691 aaaccctaattttattcattgtcagtgagtttcaccctct 13234730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 43 - 219
Target Start/End: Complemental strand, 7142036 - 7141860
Alignment:
Q  43 agagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnnttta 142  Q
    |||||||||||||||||||| ||||       |||||||||||||||||||||||        |||||  ||||||| |||||||||||        |||    
T  7142036 agagtttttctatttacaccccatgtttttctggttacacccaaattttcttaaaaaaaatttataatatcaaaattacccttttatatatattttctta 7141937  T
Q  143 aaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  7141936 aaaccctaattttattcattgtcagtgagtttcaccctctttcaccccataaagcgatcgatcaaacaatttgatgt 7141860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 43 - 219
Target Start/End: Complemental strand, 18894567 - 18894391
Alignment:
Q  43 agagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnnttta 142  Q
    |||||||||||||||||||| ||||       |||||||||||||||||||||||        |||||  |||||||||||||||||||        |||    
T  18894567 agagtttttctatttacaccccatgtttttctggttacacccaaattttcttaaaaaaattttataatatcaaaattgcccttttatataaattttctta 18894468  T
Q  143 aaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    ||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  18894467 aaatcctaattttattcattgtcagtgagtttcaccctctttcaccccataaagcgatcgatcaaacaatttgatgt 18894391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 43 - 219
Target Start/End: Original strand, 25332149 - 25332325
Alignment:
Q  43 agagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnnttta 142  Q
    |||||||||||||||||||| ||||       |||||||||||||||||||||||        |||||   ||||||||||||||||||        |||    
T  25332149 agagtttttctatttacaccccatgtttttctggttacacccaaattttcttaaaaaatatttataataaaaaaattgcccttttatataaattttctta 25332248  T
Q  143 aaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  25332249 aaaccctaattttattcattgtcagtgagtttcaccctcttttaccccacaaagcgatctatcaaacaatttgatgt 25332325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 43 - 219
Target Start/End: Complemental strand, 6626156 - 6625980
Alignment:
Q  43 agagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnnttta 142  Q
    |||||||||||||||||| | ||||       |||||||||||||||||||||||        |||||  |||||||||||||||||||        |||    
T  6626156 agagtttttctatttacaacccatgtttttctggttacacccaaattttcttaaattttttttataatatcaaaattgcccttttatataaattttctta 6626057  T
Q  143 aaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    ||||| ||||||||||||||||| |||||||||||||||||| || |||||||||||||||||||||||||||||||    
T  6626056 aaaccttaattttattcattgtcagtgagtttcaccctctttcactccataaagcgatcgatcaaacaatttgatgt 6625980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 43 - 219
Target Start/End: Original strand, 6167248 - 6167423
Alignment:
Q  43 agagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnnttta 142  Q
    |||||||||||||||||||| ||||       ||||||||||||||||||||||         ||||| | ||||||||||||||||||        |||    
T  6167248 agagtttttctatttacaccccatgtttttctggttacacccaaattttcttaa-ttttttttataatacaaaaattgcccttttatataaattttctta 6167346  T
Q  143 aaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    |||||||| |||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  6167347 aaaccctagttttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 6167423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 44 - 219
Target Start/End: Original strand, 13889307 - 13889482
Alignment:
Q  44 gagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaa 143  Q
    ||||||||||||||||||| ||||        ||||||||||||||||||||||        ||||| ||||||||||||||||||||        ||||    
T  13889307 gagtttttctatttacaccccatgtttttctagttacacccaaattttcttaaattttttt-ataataccaaaattgcccttttatataaattttcttaa 13889405  T
Q  144 aaccctaattttattcattgtcggtgagtttcaccctctttta-ccccataaagcgatcgatcaaacaatttgatgt 219  Q
    || ||||||||||||||||||| |||||||||||||||||| | ||||| |||||||||||||||||||||||||||    
T  13889406 aatcctaattttattcattgtcagtgagtttcaccctctttcacccccacaaagcgatcgatcaaacaatttgatgt 13889482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 106 - 212
Target Start/End: Original strand, 29121690 - 29121796
Alignment:
Q  106 ataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatc 205  Q
    ||||| ||||||||||||||||||||        |||||||||||||||||||||||||| |||||||||| | ||||| | |||| |||||||||||||    
T  29121690 ataataccaaaattgcccttttatataaattttcttaaaaccctaattttattcattgtcagtgagtttcatcatctttcatcccacaaagcgatcgatc 29121789  T
Q  206 aaacaat 212  Q
    || ||||    
T  29121790 aatcaat 29121796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 44 - 184
Target Start/End: Complemental strand, 25331773 - 25331634
Alignment:
Q  44 gagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaa 143  Q
    ||||||||||||||||||| ||||       ||||||| |||||||||||||||        |||||  |||||||||||||||||||        ||||    
T  25331773 gagtttttctatttacacc-catgtttttctggttacatccaaattttcttaaaaaaaatttataatatcaaaattgcccttttatataaattttcttaa 25331675  T
Q  144 aaccctaattttattcattgtcggtgagtttcaccctcttt 184  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  25331674 aaccctaattttattcattgtcagtgagtttcaccctcttt 25331634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 44 - 219
Target Start/End: Complemental strand, 3095368 - 3095193
Alignment:
Q  44 gagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaa 143  Q
    |||||||| |||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||| ||||| ||||        ||||    
T  3095368 gagtttttttatttacaccccatgtttttctggttacacccaaattttcttaaaatttttttataataccaaaattgtccttt-atataaattttcttaa 3095270  T
Q  144 aaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgat--cgatcaaacaatttgatgt 219  Q
    || |||||||||||||||||||  ||||||||||||||||| ||||||  |||||||  |||||||||||||||||||    
T  3095269 aatcctaattttattcattgtcactgagtttcaccctctttcacccca-caagcgatcacgatcaaacaatttgatgt 3095193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 140 - 219
Target Start/End: Original strand, 29629858 - 29629938
Alignment:
Q  140 ttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgat--cgatcaaacaatttgatgt 219  Q
    ||||||||||||||||||||||||||  ||||||||||||||||| ||||||  |||||||  ||| |||||||||||||||    
T  29629858 ttaaaaccctaattttattcattgtcactgagtttcaccctctttcacccca-caagcgatcacgaacaaacaatttgatgt 29629938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 43 - 219
Target Start/End: Original strand, 19873352 - 19873528
Alignment:
Q  43 agagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnnttta 142  Q
    |||||||||||||||||||| ||||       |||| ||||||||||||||||||        ||||| ||||||||||||||||||||        |||    
T  19873352 agagtttttctatttacaccccatgtttttctggttgcacccaaattttcttaaaaaaaaattataataccaaaattgcccttttatataaattttctta 19873451  T
Q  143 aaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  19873452 aaaccctaattttattcattgtcagtgagtttcaccctcttttaccccacaaagcgattgatcaaacaatttgatgt 19873528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 44 - 219
Target Start/End: Complemental strand, 20434934 - 20434759
Alignment:
Q  44 gagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaa 143  Q
    ||||||||||||||||||| ||||       |||||||||||||||||||| ||        ||||| ||||||||||||||||||||        ||||    
T  20434934 gagtttttctatttacaccccatgtttttctggttacacccaaattttctttaaaaaaaattataataccaaaattgcccttttatataaattttcttaa 20434835  T
Q  144 aaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  20434834 aaccctaattttattcattgtcagtgagtttcaccctcttttaccccacaaagcgattgatcaaacaatttgatgt 20434759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 44 - 219
Target Start/End: Original strand, 28405712 - 28405887
Alignment:
Q  44 gagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaa 143  Q
    ||||||||||||||||||| ||||       ||||||| |||||||||||||||        ||||| ||||||||||||||||||||       |||||    
T  28405712 gagtttttctatttacaccccatgtttttctggttacatccaaattttcttaaaatttttttataataccaaaattgcccttttatatataaaaatttaa 28405811  T
Q  144 aaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    |||||||||||||||||||||| |||||||||||||||||| |||||| |||||||| ||||||||||||||||||    
T  28405812 aaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatggatcaaacaatttgatgt 28405887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 36 - 219
Target Start/End: Original strand, 55214861 - 55215044
Alignment:
Q  36 aagaatgagagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnn 135  Q
    |||||| |||||||||||||||||||| ||||       ||||||||||||||||||||||         ||||| ||||||||||||||||||||        
T  55214861 aagaattagagtttttctatttacaccccatgtttttctggttacacccaaattttcttaatttttttttataataccaaaattgcccttttatataaat 55214960  T
Q  136 nnntttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
        |||||||||||||||||||||||||  |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  55214961 tttcttaaaaccctaattttattcattgtgagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 55215044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 44 - 219
Target Start/End: Original strand, 43829521 - 43829695
Alignment:
Q  44 gagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaa 143  Q
    ||||||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||        ||||    
T  43829521 gagtttttctatttacaccccatgtttttctggttacacccaaattttcttaaattttttt-ataataccaaaattgcccttttatataaattttcttaa 43829619  T
Q  144 aaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    |||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  43829620 aaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 43829695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 43 - 219
Target Start/End: Original strand, 42723406 - 42723582
Alignment:
Q  43 agagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnnttta 142  Q
    |||||||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||| ||        |||    
T  42723406 agagtttttctatttacaccccatgtttttctggttacacccaaattttcttaaaaaaaaattataataccaaaattgcccttttacataaattttctta 42723505  T
Q  143 aaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||| ||||||||||||||||||    
T  42723506 aaaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgattgatcaaacaatttgatgt 42723582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 43 - 219
Target Start/End: Original strand, 52912425 - 52912601
Alignment:
Q  43 agagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnnttta 142  Q
    |||||||||||||||||||| ||||       |||||||||||||||||||| ||        |||||  |||||||||||||||||||        |||    
T  52912425 agagtttttctatttacaccccatgtttttctggttacacccaaattttctttaaaaaaatttataatatcaaaattgcccttttatataaattttctta 52912524  T
Q  143 aaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    ||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  52912525 aaaccctaattttattcattgtcagtgagtttcgccctctttcaccccataaagcgatcgatcaaacaatttgatgt 52912601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 43 - 219
Target Start/End: Complemental strand, 55220690 - 55220514
Alignment:
Q  43 agagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnnttta 142  Q
    |||||||||||||||||||| ||||       ||||||||||||||||||||||         ||||| ||||||||||||||||||||        |||    
T  55220690 agagtttttctatttacaccccatgtttttctggttacacccaaattttcttaatttttttttataataccaaaattgcccttttatataaattttctta 55220591  T
Q  143 aaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    ||||||||||||||||||||||  |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  55220590 aaaccctaattttattcattgtgagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 55220514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 43 - 219
Target Start/End: Complemental strand, 56363526 - 56363350
Alignment:
Q  43 agagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnnttta 142  Q
    |||||||||||||||||||| ||||       | |||||||||||||||||||||        ||||| ||||||||||||||||||||        |||    
T  56363526 agagtttttctatttacaccccatgtttttctgattacacccaaattttcttaaaaactttttataataccaaaattgcccttttatataaattttctta 56363427  T
Q  143 aaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||| ||||| |||||||||||||||||||||    
T  56363426 aaaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcaatcgatcaaacaatttgatgt 56363350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 43 - 219
Target Start/End: Complemental strand, 20738569 - 20738394
Alignment:
Q  43 agagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnnttta 142  Q
    |||||||||||||||||||| ||||       ||||||||||||||||| |||||        ||||| ||||||||||||||||||||        |||    
T  20738569 agagtttttctatttacaccccatgtttttctggttacacccaaatttttttaaaagttttt-ataataccaaaattgcccttttatataaattttctta 20738471  T
Q  143 aaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  20738470 aaaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 20738394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 44 - 219
Target Start/End: Complemental strand, 42349522 - 42349347
Alignment:
Q  44 gagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaa 143  Q
    ||||||||||||||||||| |||        |||||||||||||||||||||||        ||||| ||||||||| ||||||||||        ||||    
T  42349522 gagtttttctatttacaccccatatttttctggttacacccaaattttcttaaaaaaaatttataataccaaaattgtccttttatataaattttcttaa 42349423  T
Q  144 aaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    |||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  42349422 aaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 42349347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 44 - 219
Target Start/End: Original strand, 56017714 - 56017889
Alignment:
Q  44 gagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaa 143  Q
    ||||||||||||||||||| ||||       ||||||| |||||||||||||||        ||||| ||||||||||||||||||||        ||||    
T  56017714 gagtttttctatttacaccccatgtttttctggttacatccaaattttcttaaaagttttttataataccaaaattgcccttttatataaattttcttaa 56017813  T
Q  144 aaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    |||| ||||||||||||||| | |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  56017814 aaccttaattttattcattgccagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 56017889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 43 - 219
Target Start/End: Original strand, 23894460 - 23894636
Alignment:
Q  43 agagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnnttta 142  Q
    |||||||||||||||||||| ||||        ||||||||| ||||||||||||        |||||  |||||||| ||||||||||        |||    
T  23894460 agagtttttctatttacaccccatgtttttctagttacacccgaattttcttaaaatttttttataatatcaaaattgtccttttatataaattttatta 23894559  T
Q  143 aaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    ||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  23894560 aaaccttaattttattcattgtcagtgagtttcaccctctttcaccccataaagcgatcgatcaaacaatttgatgt 23894636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 44 - 219
Target Start/End: Original strand, 38291157 - 38291333
Alignment:
Q  44 gagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnn-ataattccaaaattgcccttttatatnnnnnnnttta 142  Q
    ||||||||||||||||||| ||||       ||||||||||||||||| |||||         ||||| | ||||||||||||||||||        |||    
T  38291157 gagtttttctatttacaccccatgtttttctggttacacccaaatttttttaaatttttttttataatactaaaattgcccttttatataaattttctta 38291256  T
Q  143 aaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  38291257 aaaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 38291333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 43 - 219
Target Start/End: Original strand, 46563749 - 46563924
Alignment:
Q  43 agagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnnttta 142  Q
    |||||||||||||||||||  ||||       |||||||||||||||||||||||        |||||  |||||||||||||||||||        |||    
T  46563749 agagtttttctatttacactccatgtttttctggttacacccaaattttcttaaattttttt-ataatatcaaaattgcccttttatataaattttctta 46563847  T
Q  143 aaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||| || |||||||||||||||||||||||||||    
T  46563848 aaaccctaattttattcattgtcagtgagtttcaccctctttcacctcacaaagcgatcgatcaaacaatttgatgt 46563924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 44 - 219
Target Start/End: Original strand, 37233438 - 37233614
Alignment:
Q  44 gagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaa 143  Q
    ||||||||||||||||||| ||||       ||||||||| |||||||||||||        ||||| ||||||||| ||||||||||        ||||    
T  37233438 gagtttttctatttacaccccatgtttttctggttacacctaaattttcttaaaatttttttataataccaaaattgtccttttatataaattttcttaa 37233537  T
Q  144 aaccctaattttattcattgtcggtgagtttcaccctctttta-ccccataaagcgatcgatcaaacaatttgatgt 219  Q
    |||||||||||||||||||||| |||||||| ||||||||| | ||||| |||||||||||||||||||||||||||    
T  37233538 aaccctaattttattcattgtcagtgagttttaccctctttcacccccacaaagcgatcgatcaaacaatttgatgt 37233614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 44 - 219
Target Start/End: Original strand, 55182793 - 55182968
Alignment:
Q  44 gagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaa 143  Q
    ||||||||||||||||||| ||||       ||||||| |||||||||||||||        |||||   ||||||||||||||||||        ||||    
T  55182793 gagtttttctatttacaccccatgtttttttggttacatccaaattttcttaaattttttttataatattaaaattgcccttttatataaattttcttaa 55182892  T
Q  144 aaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    || ||||||||||||||||||| |||||||||||||||||| |||||| ||| |||||||||||||||||||||||    
T  55182893 aatcctaattttattcattgtcagtgagtttcaccctctttcaccccacaaaacgatcgatcaaacaatttgatgt 55182968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 44 - 219
Target Start/End: Original strand, 39539734 - 39539908
Alignment:
Q  44 gagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaa 143  Q
    |||||| |||||||||||| ||||       |||||||||||||||||||||||        | ||| |||||||| |||||||||||        ||||    
T  39539734 gagtttctctatttacaccccatgtttttctggttacacccaaattttcttaaaaaaaatt-acaataccaaaattacccttttatataaattttcttaa 39539832  T
Q  144 aaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    |||||||||||||||||||||| |||||||||||||||||| || ||| |||||||||||||||||||||||||||    
T  39539833 aaccctaattttattcattgtcagtgagtttcaccctctttcactccacaaagcgatcgatcaaacaatttgatgt 39539908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 43 - 219
Target Start/End: Complemental strand, 614651 - 614474
Alignment:
Q  43 agagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnnttta 142  Q
    |||||||||||||||||||| ||||        |||||||||||||||||||||         ||||| ||||||||||||||||||||        |||    
T  614651 agagtttttctatttacaccccatgtttttctagttacacccaaattttcttaa--tttttttataataccaaaattgcccttttatataaattttctta 614554  T
Q  143 aaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgat---caaacaatttgatgt 219  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||   |||||||||||||||    
T  614553 aaaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaacaaacaatttgatgt 614474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 43 - 219
Target Start/End: Original strand, 1356317 - 1356494
Alignment:
Q  43 agagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnnttta 142  Q
    |||||||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||        |||    
T  1356317 agagtttttctatttacaccccatgtttttttggttacacccaaattttcttaaaagttttttataataccaaaattgcccttttatataaattttctta 1356416  T
Q  143 aaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgat--cgatcaaacaatttgatgt 219  Q
    |||||||||||||||||||||||  ||||||||||||||||| ||||||  |||||||  ||| |||||||||||||||    
T  1356417 aaaccctaattttattcattgtcactgagtttcaccctctttcacccca-caagcgatcacgagcaaacaatttgatgt 1356494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 113 - 219
Target Start/End: Original strand, 53874379 - 53874485
Alignment:
Q  113 caaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaat 212  Q
    |||||||||||||||||||        |||||||  ||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||    
T  53874379 caaaattgcccttttatataaattttcttaaaactttaattttattcattgtcagtgagttttaccctctttcaccccataaagcgatcgatcaaacaat 53874478  T
Q  213 ttgatgt 219  Q
    |||||||    
T  53874479 ttgatgt 53874485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 106 - 219
Target Start/End: Original strand, 52839050 - 52839163
Alignment:
Q  106 ataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatc 205  Q
    ||||| ||||||||||||||||||||        |||||||||||||||||||||||||| |||||||||||||||||| | |||| ||| |||| ||||    
T  52839050 ataataccaaaattgcccttttatataaattttcttaaaaccctaattttattcattgtcagtgagtttcaccctctttcatcccacaaaccgattgatc 52839149  T
Q  206 aaacaatttgatgt 219  Q
    ||||||||||||||    
T  52839150 aaacaatttgatgt 52839163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 47 - 219
Target Start/End: Original strand, 10541383 - 10541557
Alignment:
Q  47 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgccctttt-atatnnnnnnntttaaaa 145  Q
    |||||||||||||||| ||||       |||||||||||||||||||||||        ||||| |||||||||||||||| ||||        ||||||    
T  10541383 tttttctatttacaccccatgtttttctggttacacccaaattttcttaaaagttttttataataccaaaattgccctttttatataaattttcttaaaa 10541482  T
Q  146 ccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgat--cgatcaaacaatttgatgt 219  Q
    ||||||||||||||||||||  ||||||||||||||||| ||||||  |||||||  ||| |||||||||||||||    
T  10541483 ccctaattttattcattgtcactgagtttcaccctctttcacccca-caagcgatcacgagcaaacaatttgatgt 10541557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 43 - 178
Target Start/End: Complemental strand, 5098852 - 5098717
Alignment:
Q  43 agagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnnttta 142  Q
    |||||||||||||||||||| ||||       |||||||||||||||||||||||        | ||| |||||||||| |||||||||        |||    
T  5098852 agagtttttctatttacaccccatgtttttctggttacacccaaattttcttaaaaaaattttaaaataccaaaattgcacttttatataaattttctta 5098753  T
Q  143 aaaccctaattttattcattgtcggtgagtttcacc 178  Q
    ||||||||||||||||||||||| ||||||||||||    
T  5098752 aaaccctaattttattcattgtcagtgagtttcacc 5098717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 176 - 219
Target Start/End: Complemental strand, 25858352 - 25858309
Alignment:
Q  176 accctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    ||||||||| |||||| |||||||||||||||||||||||||||    
T  25858352 accctctttcaccccacaaagcgatcgatcaaacaatttgatgt 25858309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 44 - 131
Target Start/End: Complemental strand, 31710618 - 31710531
Alignment:
Q  44 gagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatat 131  Q
    ||||||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||    
T  31710618 gagtttttctatttacaccccatgtttttctggttacacccaaattttcttaaattttttttataataccaaaattgcccttttatat 31710531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 7e-39; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 44 - 219
Target Start/End: Original strand, 22781074 - 22781249
Alignment:
Q  44 gagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaa 143  Q
    ||||||||||||||||||| ||||       |||||||||||||||||||||||        ||||| |||||||||| |||||||||        ||||    
T  22781074 gagtttttctatttacaccccatgtttttctggttacacccaaattttcttaaattttttttataataccaaaattgctcttttatataaattttcttaa 22781173  T
Q  144 aaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    |||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  22781174 aaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 22781249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 44 - 219
Target Start/End: Complemental strand, 33967741 - 33967566
Alignment:
Q  44 gagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaa 143  Q
    ||||||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||        ||||    
T  33967741 gagtttttctatttacaccccatgtttttctggttacacccaaattttcttaaaaaaaaattataataccaaaattgcccttttatataaattttcttaa 33967642  T
Q  144 aaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    |||||||||||||||||||||| |||||||||||||||||| |||||| |||||||| ||||||||||||||||||    
T  33967641 aaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgattgatcaaacaatttgatgt 33967566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 44 - 219
Target Start/End: Original strand, 37970938 - 37971113
Alignment:
Q  44 gagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaa 143  Q
    ||||||||||||||||||| ||||       ||||||||||||||||||||||         ||||| ||||||||||||||||||||        ||||    
T  37970938 gagtttttctatttacaccccatgtttttctggttacacccaaattttcttaatttttttttataataccaaaattgcccttttatataaattttcttaa 37971037  T
Q  144 aaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    |||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  37971038 aaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 37971113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 43 - 215
Target Start/End: Original strand, 10840658 - 10840830
Alignment:
Q  43 agagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnnttta 142  Q
    |||||||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||        |||    
T  10840658 agagtttttctatttacaccccatgtttttttggttacacccaaattttcttaaattttttttataataccaaaattgcccttttatataaattttctta 10840757  T
Q  143 aaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttg 215  Q
    ||||||||||||||||||||||| |||| ||||||||||||| |||||| |||||||||||||||||||||||    
T  10840758 aaaccctaattttattcattgtcagtgaatttcaccctctttcaccccacaaagcgatcgatcaaacaatttg 10840830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 43 - 215
Target Start/End: Complemental strand, 41070707 - 41070535
Alignment:
Q  43 agagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnnttta 142  Q
    |||||||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||        |||    
T  41070707 agagtttttctatttacaccccatgtttttttggttacacccaaattttcttaaattttttttataataccaaaattgcccttttatataaattttctta 41070608  T
Q  143 aaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttg 215  Q
    ||||||||||||||||||||||| |||| ||||||||||||| |||||| |||||||||||||||||||||||    
T  41070607 aaaccctaattttattcattgtcagtgaatttcaccctctttcaccccacaaagcgatcgatcaaacaatttg 41070535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 44 - 219
Target Start/End: Complemental strand, 32237122 - 32236947
Alignment:
Q  44 gagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaa 143  Q
    ||||||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||        ||||    
T  32237122 gagtttttctatttacaccccatgtttgtctggttacacccaaattttcttaaaagttttttataataccaaaattgcccttttatataaattttcttaa 32237023  T
Q  144 aaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    ||||||| |||||||||||||| |||||||||||||||||| |||||  ||| |||||||||||||||||||||||    
T  32237022 aaccctacttttattcattgtcagtgagtttcaccctctttcacccctcaaaacgatcgatcaaacaatttgatgt 32236947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 43 - 219
Target Start/End: Original strand, 33711948 - 33712123
Alignment:
Q  43 agagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnnttta 142  Q
    ||||||||||||||||||||  |||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||        |||    
T  33711948 agagtttttctatttacaccctatgtttttctggttacacccaaattttcttaaattttttt-ataataccaaaattgcccttttatataaatattctta 33712046  T
Q  143 aaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||| |||| ||||||||||||||||||||||    
T  33712047 aaaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagtgatcgatcaaacaatttgatgt 33712123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 44 - 215
Target Start/End: Complemental strand, 36431138 - 36430967
Alignment:
Q  44 gagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaa 143  Q
    ||||||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||| ||||||||||        ||||    
T  36431138 gagtttttctatttacaccccatgtttttttggttacacccaaattttcttaaattttttttataataccaaaattgtccttttatataaattttcttaa 36431039  T
Q  144 aaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttg 215  Q
    |||||||||||||||||||||| |||| ||||||||||||| |||||| |||||||||||||||||||||||    
T  36431038 aaccctaattttattcattgtcagtgaatttcaccctctttcaccccacaaagcgatcgatcaaacaatttg 36430967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 44 - 219
Target Start/End: Complemental strand, 38871947 - 38871772
Alignment:
Q  44 gagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaa 143  Q
    ||||||||||||||||||| |||        ||||||| |||||||||||||||        |||||  |||||||||||||||||||        ||||    
T  38871947 gagtttttctatttacaccccatatttttttggttacatccaaattttcttaaaaaatttttataatatcaaaattgcccttttatataaattttcttaa 38871848  T
Q  144 aaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    |||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  38871847 aaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 38871772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 75 - 219
Target Start/End: Complemental strand, 25711719 - 25711575
Alignment:
Q  75 ggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagttt 174  Q
    |||||||||||||||||||||||        ||||| |||||||| || ||||||||        |||||||||||||||||||||||||| ||||||||    
T  25711719 ggttacacccaaattttcttaaaatttttttataataccaaaattacctttttatataaattttcttaaaaccctaattttattcattgtcagtgagttt 25711620  T
Q  175 caccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    |||||||||| |||||| |||||||||||||||||||||||||||    
T  25711619 caccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 25711575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 44 - 219
Target Start/End: Original strand, 4044042 - 4044217
Alignment:
Q  44 gagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaa 143  Q
    ||||||||||||||||||| ||||       ||||||||||||||||||||||         ||||| ||||||||||||||||||||       |||||    
T  4044042 gagtttttctatttacaccccatgtttttctggttacacccaaattttcttaatttttttttataataccaaaattgcccttttatataattttttttaa 4044141  T
Q  144 aaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    |||||||||||||| |||||   |||||||||||||||||| |||||| ||| |||||||||||||||||||||||    
T  4044142 aaccctaattttatccattggtagtgagtttcaccctctttcaccccacaaaacgatcgatcaaacaatttgatgt 4044217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 113 - 219
Target Start/End: Original strand, 20834845 - 20834951
Alignment:
Q  113 caaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaat 212  Q
    |||||||||||||||||||        |||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||    
T  20834845 caaaattgcccttttatataaattttcttaaaaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaat 20834944  T
Q  213 ttgatgt 219  Q
    |||||||    
T  20834945 ttgatgt 20834951  T

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Target: chr3; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 140 - 219
Target Start/End: Original strand, 4515366 - 4515445
Alignment:
Q  140 ttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  4515366 ttaaaaccctaattttattcattgtcagtgagtttcaccctcttttaccccacaaagcgattgatcaaacaatttgatgt 4515445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 76 - 219
Target Start/End: Complemental strand, 24395989 - 24395846
Alignment:
Q  76 gttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttc 175  Q
    ||||||||||||||||||||||        ||||| |||||||||||||| |||||        |||||||||||||||||||||||| | |||||||||    
T  24395989 gttacacccaaattttcttaaaagttttttataataccaaaattgcccttatatataaattttcttaaaaccctaattttattcattgacagtgagtttc 24395890  T
Q  176 accctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    ||||||||| |||||| |||| ||||||||||||||||||||||    
T  24395889 accctctttcaccccacaaagtgatcgatcaaacaatttgatgt 24395846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 44 - 219
Target Start/End: Original strand, 20656519 - 20656694
Alignment:
Q  44 gagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaa 143  Q
    ||||||||||||||||||| ||||       |||||||||||||||||||||||        |||||  |||||||| ||||||||||        ||||    
T  20656519 gagtttttctatttacaccccatgtttttctggttacacccaaattttcttaaaagttttttataatatcaaaattgtccttttatataaattttcttaa 20656618  T
Q  144 aaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    ||||||| |||||||||||||| |||||||||||||||||| |||||  ||||  |||||||||||||||||||||    
T  20656619 aaccctacttttattcattgtcagtgagtttcaccctctttcacccctcaaagaaatcgatcaaacaatttgatgt 20656694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 44 - 182
Target Start/End: Original strand, 7149232 - 7149370
Alignment:
Q  44 gagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaa 143  Q
    ||||||||||||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||||||||||||||        ||||    
T  7149232 gagtttttctatttacaccccatgtttttctggttacacccaaattttcttaaaagttttttataataccaaaattgcccttttatataaattttcttaa 7149331  T
Q  144 aaccctaattttattcattgtcggtgagtttcaccctct 182  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  7149332 aaccctaattttattcattgtcagtgagtttcaccctct 7149370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 43 - 219
Target Start/End: Complemental strand, 20049132 - 20048955
Alignment:
Q  43 agagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnnttta 142  Q
    |||||||||||||||||||| |||        |||||||||||||||||||||||        ||||| |||||||||  |||||||||        |||    
T  20049132 agagtttttctatttacaccccatatttttctggttacacccaaattttcttaaaagttttttataataccaaaattgttcttttatataaattttctta 20049033  T
Q  143 aaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgat--cgatcaaacaatttgatgt 219  Q
    |||||||||||||||||||||||  ||||||||||||||||| ||||||  |||||||  ||| |||||||||||||||    
T  20049032 aaaccctaattttattcattgtcactgagtttcaccctctttcacccca-caagcgatcacgaacaaacaatttgatgt 20048955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 44 - 219
Target Start/End: Original strand, 40585389 - 40585564
Alignment:
Q  44 gagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaa 143  Q
    |||||||| |||||||||| ||||       |||||||||||||||||||||||        ||||| ||||||||| | ||||||||        ||||    
T  40585389 gagtttttttatttacaccccatgtttttctggttacacccaaattttcttaaaagttttttataataccaaaattgtc-ttttatataaattttcttaa 40585487  T
Q  144 aaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgat--cgatcaaacaatttgatgt 219  Q
    ||||||||||||||||||||||  ||||||||||||||||| ||||||  |||||||  |||||||||||||||||||    
T  40585488 aaccctaattttattcattgtcactgagtttcaccctctttcacccca-caagcgatcacgatcaaacaatttgatgt 40585564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 47 - 219
Target Start/End: Complemental strand, 672883 - 672720
Alignment:
Q  47 tttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaaaac 146  Q
    |||||||||||||||| ||||       ||||||||| |||||||||||||        ||||| ||||||||||||||||||||        |||||||    
T  672883 tttttctatttacaccccatgtttttctggttacacctaaattttcttaaaagttttttataataccaaaattgcccttttatataaattttcttaaaac 672784  T
Q  147 cctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    ||||||||||||||||    |||||||||||||||||| ||||||     | |||||||||||||||||||||    
T  672783 cctaattttattcatt----gtgagtttcaccctctttcacccca-----caatcgatcaaacaatttgatgt 672720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 106 - 219
Target Start/End: Original strand, 10999078 - 10999192
Alignment:
Q  106 ataattccaaaattgcccttttatatnnnnnnntttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgat--cga 203  Q
    ||||| |||||||||||||||||| |        ||||||||||||||||||||||||||  ||||||||||||||||| ||||||  |||||||  |||    
T  10999078 ataataccaaaattgcccttttatgtaaattttcttaaaaccctaattttattcattgtcactgagtttcaccctctttcacccca-caagcgatcacga 10999176  T
Q  204 tcaaacaatttgatgt 219  Q
    ||||||||||| ||||    
T  10999177 tcaaacaatttaatgt 10999192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 44 - 219
Target Start/End: Complemental strand, 53975092 - 53974929
Alignment:
Q  44 gagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaa 143  Q
    ||||||||||||||||||| ||||       ||||||| ||||||||||||||         ||||| ||||||||||||||||||||        ||||    
T  53975092 gagtttttctatttacaccccatgtttttctggttacatccaaattttcttaa--tttttttataataccaaaattgcccttttatataaattttcttaa 53974995  T
Q  144 aaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    |||||||||||||||||||||| |||||||||          |||||| |||||||||||||||||||||||||||    
T  53974994 aaccctaattttattcattgtcagtgagtttc----------accccacaaagcgatcgatcaaacaatttgatgt 53974929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 179
Target Start/End: Original strand, 6267664 - 6267703
Alignment:
Q  140 ttaaaaccctaattttattcattgtcggtgagtttcaccc 179  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  6267664 ttaaaaccctaattttattcattgtcagtgagtttcaccc 6267703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 44 - 219
Target Start/End: Complemental strand, 41349 - 41174
Alignment:
Q  44 gagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaa 143  Q
    ||||||||||||||||||| ||||       ||||||||||||||||||||||         |||||  |||||||||||||||||||        ||||    
T  41349 gagtttttctatttacaccccatgtttttttggttacacccaaattttcttaatttttttttataatatcaaaattgcccttttatataaattttcttaa 41250  T
Q  144 aaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    |||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  41249 aaccctaattttattcattgtcagtgagtttcaccctctttcatcccataaagcgatcgatcaaacaatttgatgt 41174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 43 - 219
Target Start/End: Original strand, 1366 - 1542
Alignment:
Q  43 agagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnnttta 142  Q
    |||||||||||||||||||| ||||       ||||||||||||||||||||||         ||||| ||||||||||||||||||||        |||    
T  1366 agagtttttctatttacaccccatgtttttctggttacacccaaattttcttaatttttttttataataccaaaattgcccttttatataaattttctta 1465  T
Q  143 aaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||| |||| ||||||||||||||| ||||||    
T  1466 aaaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagagatcgatcaaacaatctgatgt 1542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0368 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0368
Description:

Target: scaffold0368; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 44 - 219
Target Start/End: Complemental strand, 14685 - 14510
Alignment:
Q  44 gagtttttctatttacacctcatgnnnnnnnggttacacccaaattttcttaaannnnnnnnataattccaaaattgcccttttatatnnnnnnntttaa 143  Q
    ||||||||||||||||||| ||||       ||||||||||||||||||||||         ||||| ||||||||||||||||||||        || |    
T  14685 gagtttttctatttacaccccatgtttttttggttacacccaaattttcttaatttttttttataataccaaaattgcccttttatataaattttcttta 14586  T
Q  144 aaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    || ||||||||||||||||||| |||||||||||||||||| |||||| ||| |||||||||||||||||||||||    
T  14585 aatcctaattttattcattgtcagtgagtttcaccctctttcaccccacaaaacgatcgatcaaacaatttgatgt 14510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0391 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0391
Description:

Target: scaffold0391; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 140 - 219
Target Start/End: Complemental strand, 4738 - 4659
Alignment:
Q  140 ttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    |||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  4738 ttaaaaccctaattttattcattgtcagtgagtttcaccctctttcaccccacaaagcgatcgatcaaacaatttgatgt 4659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 140 - 219
Target Start/End: Original strand, 156453 - 156522
Alignment:
Q  140 ttaaaaccctaattttattcattgtcggtgagtttcaccctcttttaccccataaagcgatcgatcaaacaatttgatgt 219  Q
    |||||||||||||||||||||||||| |||||||||          |||||| |||||||||||||||||||||||||||    
T  156453 ttaaaaccctaattttattcattgtcagtgagtttc----------accccacaaagcgatcgatcaaacaatttgatgt 156522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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