View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7165_low_2 (Length: 765)
Name: NF7165_low_2
Description: NF7165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7165_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 527; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 1 - 749
Target Start/End: Complemental strand, 12631330 - 12630606
Alignment:
| Q |
1 |
aaaaactaaggggggccgagaggtggagaaagtgagagtgaagatgacgagatgagattgagagaaagggaaagctcttgagcggtcaggtagagtgaat |
100 |
Q |
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||||||||| || |||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
12631330 |
aaaaactaaaggaggccgagaggaggagaaagtgagagtgaaggtgacgagatgagactgagagaaagggaaagctcttgagcggtcaggtagagtgaat |
12631231 |
T |
|
| Q |
101 |
aagaggataatggatttcaggtagtttcgatatattttatgtttgggttgggctattgagcacaattaacttcaatgaattagcttcaagaactctccaa |
200 |
Q |
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||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||| |
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| T |
12631230 |
aagaggataatggatttcaggtagttttgatgtattttatgtttgggttggactattgagcataattaacttcaatgaattagcttcaagaactgtccaa |
12631131 |
T |
|
| Q |
201 |
gagcaaactctaattttaacctctttttccaatctctcaactgaaaagaatatcctgagagaaatcaagagagaaagcttaattctttcctttaacgaga |
300 |
Q |
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|||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||| |
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| T |
12631130 |
gagcaaactctaatttcaacctttttttccaatctctcaactgaaaagaatatcctcaaagaaatcaagagagaaagcttagttctttcctttaacgaga |
12631031 |
T |
|
| Q |
301 |
tatcattatcaaaggtgtttagaatgtgtgtacccctagagtctcatctagggtggccttaagcatgggcggccgcccatggtacaannnnnnnaggagc |
400 |
Q |
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| T |
12631030 |
tatcattatcaaaggtgtttagaatgtgttta-ccctagagtctcatctagggtggccttaagcatgggcggccgcccatggtacaattttttgagggtc |
12630932 |
T |
|
| Q |
401 |
accaaaattattatttttatttggttgttggtagatatacttatatttctttttaactgagaccttaagaaggagcacactcacaaatttcaagtcaata |
500 |
Q |
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| T |
12630931 |
accaaaattattatttttacttggttgttggtagatatacctatatttcttttt---tg-----------aggggcac-----caaatttcaagtcaata |
12630851 |
T |
|
| Q |
501 |
ccgccaaagcaacacaagtggattttaaaagagaactttattgatccacctaggacaataaaacactcttttgatttgtttcttcttatcgatcgaaatt |
600 |
Q |
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|| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
12630850 |
ccaccaaagcaacccaagtggtttttaaaagagaactttattgatccacctaggacaataaaacactcttttgatttgtttcttctt----atcgaaatt |
12630755 |
T |
|
| Q |
601 |
gaatttatcaagtcctgcaagtataaggaagttaatttccctgcatctgttaccatttcaacatcctcaacattgttttcatataggttatcatgcactg |
700 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12630754 |
gaatttatcaagtcctgcaagaataaggaagttaatttccctgcatctgttaccatttcaacatcctcaacattgttttcatataggttatcatgcactg |
12630655 |
T |
|
| Q |
701 |
atacaagttaactcaagaaactttccatctttcatatcttcctccatat |
749 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12630654 |
atgcaagttaactcaagaaactttccatctttcatatcttcctccatat |
12630606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 460 - 502
Target Start/End: Complemental strand, 38551832 - 38551790
Alignment:
| Q |
460 |
agaccttaagaaggagcacactcacaaatttcaagtcaatacc |
502 |
Q |
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| T |
38551832 |
agaccttaagaaagagcacactcccaaatttcaaatcaatacc |
38551790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 252 - 329
Target Start/End: Complemental strand, 34688728 - 34688652
Alignment:
| Q |
252 |
atcctgagagaaatcaagagagaaagcttaattctttcctttaacgagatatcattatcaaaggtgtttagaatgtgt |
329 |
Q |
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| T |
34688728 |
atcctaagagaaatcaagagagaaagcttagatc-ttcatttaatgggatctcactacccaaggtgtttagaatgtgt |
34688652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 252 - 329
Target Start/End: Complemental strand, 34693256 - 34693180
Alignment:
| Q |
252 |
atcctgagagaaatcaagagagaaagcttaattctttcctttaacgagatatcattatcaaaggtgtttagaatgtgt |
329 |
Q |
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||||| |||||||||||||||||||||||| || ||| ||||| | ||| ||| || | |||||||||||||||||| |
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| T |
34693256 |
atcctaagagaaatcaagagagaaagcttagatc-ttcatttaatgggatctcactacccaaggtgtttagaatgtgt |
34693180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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