View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7165_low_6 (Length: 427)

Name: NF7165_low_6
Description: NF7165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7165_low_6
NF7165_low_6
[»] chr5 (17 HSPs)
chr5 (21-311)||(12700457-12700730)
chr5 (158-311)||(12761575-12761728)
chr5 (21-85)||(12761488-12761552)
chr5 (343-424)||(42717551-42717632)
chr5 (329-425)||(18207091-18207187)
chr5 (344-425)||(35193921-35194002)
chr5 (330-424)||(12834495-12834589)
chr5 (343-425)||(12866471-12866553)
chr5 (343-389)||(35311900-35311946)
chr5 (329-402)||(43523821-43523894)
chr5 (329-425)||(4920899-4920995)
chr5 (112-144)||(12761546-12761578)
chr5 (330-389)||(30996670-30996728)
chr5 (358-425)||(33727921-33727988)
chr5 (310-384)||(2412687-2412763)
chr5 (311-384)||(29665024-29665096)
chr5 (330-382)||(18116480-18116532)
[»] chr3 (21 HSPs)
chr3 (17-153)||(9682635-9682781)
chr3 (329-427)||(4557222-4557320)
chr3 (19-106)||(28213389-28213469)
chr3 (343-425)||(29284423-29284505)
chr3 (310-425)||(48390736-48390853)
chr3 (340-425)||(39728755-39728840)
chr3 (332-389)||(42758450-42758507)
chr3 (343-427)||(831089-831173)
chr3 (329-425)||(7469697-7469793)
chr3 (329-425)||(39655192-39655288)
chr3 (329-425)||(44953354-44953450)
chr3 (311-427)||(19111787-19111905)
chr3 (310-425)||(34119708-34119825)
chr3 (331-389)||(42243462-42243520)
chr3 (115-190)||(2388479-2388562)
chr3 (358-427)||(10371190-10371259)
chr3 (311-385)||(20087050-20087126)
chr3 (329-425)||(4015963-4016059)
chr3 (345-425)||(29858494-29858574)
chr3 (115-162)||(43136119-43136167)
chr3 (329-425)||(44639347-44639443)
[»] chr4 (19 HSPs)
chr4 (329-425)||(11028152-11028248)
chr4 (329-425)||(7609049-7609145)
chr4 (310-389)||(6481991-6482072)
chr4 (330-425)||(11122789-11122884)
chr4 (339-425)||(26564920-26565006)
chr4 (310-389)||(39047010-39047091)
chr4 (311-425)||(37349171-37349287)
chr4 (330-395)||(39086237-39086302)
chr4 (329-389)||(31918514-31918574)
chr4 (343-427)||(42299881-42299965)
chr4 (329-389)||(44317614-44317674)
chr4 (329-425)||(55826543-55826639)
chr4 (339-389)||(17112978-17113028)
chr4 (114-147)||(38819264-38819297)
chr4 (358-427)||(39188610-39188679)
chr4 (343-388)||(43553539-43553584)
chr4 (339-395)||(19534538-19534594)
chr4 (329-421)||(21423940-21424032)
chr4 (344-424)||(47550274-47550354)
[»] scaffold0295 (2 HSPs)
scaffold0295 (115-163)||(13388-13436)
scaffold0295 (115-163)||(9738-9786)
[»] scaffold0003 (1 HSPs)
scaffold0003 (115-163)||(161508-161556)
[»] scaffold0014 (1 HSPs)
scaffold0014 (329-427)||(14101-14199)
[»] chr1 (21 HSPs)
chr1 (310-425)||(44615394-44615511)
chr1 (310-425)||(44793058-44793175)
chr1 (310-408)||(33293467-33293567)
chr1 (158-203)||(44351660-44351705)
chr1 (310-427)||(34673199-34673318)
chr1 (313-425)||(9982809-9982923)
chr1 (340-427)||(29936507-29936594)
chr1 (310-389)||(16408995-16409076)
chr1 (343-425)||(20774654-20774736)
chr1 (330-427)||(29871203-29871299)
chr1 (332-427)||(5293323-5293418)
chr1 (368-427)||(12495123-12495182)
chr1 (310-389)||(17135000-17135081)
chr1 (310-425)||(19572431-19572548)
chr1 (343-425)||(28298034-28298116)
chr1 (343-385)||(34611161-34611203)
chr1 (310-389)||(39616345-39616426)
chr1 (113-156)||(45280839-45280886)
chr1 (311-408)||(2514811-2514911)
chr1 (343-384)||(40087424-40087465)
chr1 (329-389)||(23968653-23968713)
[»] chr7 (16 HSPs)
chr7 (329-425)||(7780086-7780182)
chr7 (329-425)||(17851930-17852026)
chr7 (358-425)||(24425475-24425542)
chr7 (343-425)||(44985837-44985919)
chr7 (310-425)||(3226865-3226982)
chr7 (343-425)||(45885684-45885766)
chr7 (329-389)||(21702737-21702797)
chr7 (329-425)||(24753241-24753337)
chr7 (329-425)||(25905706-25905802)
chr7 (358-425)||(30650738-30650805)
chr7 (330-425)||(44785177-44785272)
chr7 (310-389)||(10072523-10072604)
chr7 (343-425)||(27850251-27850333)
chr7 (329-425)||(16866247-16866343)
chr7 (115-155)||(36906804-36906844)
chr7 (339-427)||(37218093-37218181)
[»] chr2 (12 HSPs)
chr2 (329-425)||(19104756-19104852)
chr2 (310-427)||(37106745-37106864)
chr2 (329-425)||(12341674-12341770)
chr2 (343-425)||(24414051-24414133)
chr2 (115-165)||(25342828-25342878)
chr2 (115-165)||(25344914-25344964)
chr2 (329-425)||(30847020-30847116)
chr2 (329-389)||(44746064-44746124)
chr2 (329-427)||(13830809-13830907)
chr2 (343-425)||(36128025-36128107)
chr2 (74-106)||(13558962-13558994)
chr2 (311-420)||(34214582-34214692)
[»] chr8 (14 HSPs)
chr8 (310-425)||(5858571-5858688)
chr8 (329-389)||(1012691-1012751)
chr8 (343-389)||(2075789-2075835)
chr8 (310-425)||(20399644-20399761)
chr8 (329-425)||(4230649-4230745)
chr8 (358-425)||(17469345-17469412)
chr8 (310-389)||(14155584-14155665)
chr8 (310-389)||(27932465-27932546)
chr8 (339-385)||(29416146-29416192)
chr8 (311-389)||(6388471-6388551)
chr8 (358-427)||(11254932-11255001)
chr8 (358-427)||(14186410-14186479)
chr8 (329-389)||(24928022-24928082)
chr8 (329-389)||(32303134-32303194)
[»] scaffold0027 (1 HSPs)
scaffold0027 (310-425)||(7749-7865)
[»] scaffold0022 (1 HSPs)
scaffold0022 (343-421)||(90678-90756)
[»] chr6 (8 HSPs)
chr6 (343-425)||(31496521-31496603)
chr6 (343-425)||(31501907-31501989)
chr6 (329-425)||(10187999-10188095)
chr6 (329-425)||(30986326-30986422)
chr6 (310-389)||(5863338-5863419)
chr6 (343-389)||(15498411-15498457)
chr6 (329-389)||(3483878-3483938)
chr6 (329-389)||(32853917-32853977)
[»] scaffold0519 (1 HSPs)
scaffold0519 (358-427)||(10392-10461)


Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 21 - 311
Target Start/End: Original strand, 12700457 - 12700730
Alignment:
Q  21 taaatgttgaaattagggttatttatcataattaatatgacagatgacaaatttacaaagcaattttccaattcccaattctaaaagaagcagcaattgg 120  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12700457 taaatgttgaaatttgggttatttatcataattaatatgacagatgacaaatttacaaagcaattttccaattcccaattctaaaagaagcagcaattgg 12700556  T
Q  121 agaatgaattggcttaccttagagtgagtgagaactaagagagagtgagcaggcagcagctgagaagcaccagggggcaggggctcacgcgagagagagc 220  Q
    ||||||||||||||||||||                 |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  12700557 agaatgaattggcttacctt-----------------agagagagtgagcaggcagcagctgagaagcaccagcgggcaggggcttacgcgagagagagc 12700639  T
Q  221 tgttgttgagactggcggcagtgtgtgtggttannnnnnnagagagagactcacgagcagggacaacacaagagagaagaattgttttgat 311  Q
    |||||||||||||||||||||||||||||||||       |||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  12700640 tgttgttgagactggcggcagtgtgtgtggttagggggtgagagagagactcgcgaggagggacaacacaagagagaagaattgttttgat 12700730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 158 - 311
Target Start/End: Original strand, 12761575 - 12761728
Alignment:
Q  158 agagagagtgagcaggcagcagctgagaagcaccagggggcaggggctcacgcgagagagagctgttgttgagactggcggcagtgtgtgtggttannnn 257  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||        
T  12761575 agagagagtgagcaggcagcagctgagaagcaccagggggcaggggcttacgcgagagagagctgttgttgagactggcggcagtgtgtgtggttagggg 12761674  T
Q  258 nnnagagagagactcacgagcagggacaacacaagagagaagaattgttttgat 311  Q
       |||||||||||| |||| |||||||||||||||||||||||||||||||||    
T  12761675 gtgagagagagactcgcgaggagggacaacacaagagagaagaattgttttgat 12761728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 12761488 - 12761552
Alignment:
Q  21 taaatgttgaaattagggttatttatcataattaatatgacagatgacaaatttacaaagcaatt 85  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12761488 taaatgttgaaatttgggttatttatcataattaatatgacagatgacaaatttacaaagcaatt 12761552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 343 - 424
Target Start/End: Complemental strand, 42717632 - 42717551
Alignment:
Q  343 catacccaaattcattcaaaacggagaaaatccgtcaaattgggtttagtttgaatgggtaaccacatgtatgagttttgtt 424  Q
    ||||||||||| || |||||||||  |||| |||||||||||||||| ||| | | ||||||||||| ||||||||||||||    
T  42717632 catacccaaatccagtcaaaacgggaaaaacccgtcaaattgggtttggttcggacgggtaaccacaggtatgagttttgtt 42717551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 329 - 425
Target Start/End: Original strand, 18207091 - 18207187
Alignment:
Q  329 ggaaaaccctaactcatacccaaattcattcaaaacggagaaaatccgtcaaattgggtttagtttgaatgggtaaccacatgtatgagttttgttg 425  Q
    ||||||||| ||||||| ||||||  || |||||||||  ||||  ||||||||||||||| |||||  |||||||||||  |||||||||||||||    
T  18207091 ggaaaacccaaactcatgcccaaacccagtcaaaacgggaaaaacacgtcaaattgggtttggtttgggtgggtaaccacgggtatgagttttgttg 18207187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 344 - 425
Target Start/End: Complemental strand, 35194002 - 35193921
Alignment:
Q  344 atacccaaattcattcaaaacggagaaaatccgtcaaattgggtttagtttgaatgggtaaccacatgtatgagttttgttg 425  Q
    |||||||||| ||  ||||||||| |||||||||||||||||||||  ||||   ||||||||||  |||||||||||||||    
T  35194002 atacccaaatccagccaaaacggaaaaaatccgtcaaattgggtttgatttgggcgggtaaccacgagtatgagttttgttg 35193921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 330 - 424
Target Start/End: Complemental strand, 12834589 - 12834495
Alignment:
Q  330 gaaaaccctaactcatacccaaattcattcaaaacggagaaaatccgtcaaattgggtttagtttgaatgggtaaccacatgtatgagttttgtt 424  Q
    ||||||||  || ||||||||||  || |||||| || ||||| ||||||||||| |||| ||| | | ||||||||||||||||| ||||||||    
T  12834589 gaaaacccatacccatacccaaacccagtcaaaatggggaaaacccgtcaaattgagtttggttcggacgggtaaccacatgtatgggttttgtt 12834495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 425
Target Start/End: Complemental strand, 12866553 - 12866471
Alignment:
Q  343 catacccaaattcattcaaaacggagaaaatccgtcaaattgggtttagtttgaatgggtaaccacatgtatgagttttgttg 425  Q
    ||||||||||  || |||||| || ||||| |||||||||||| ||| ||| | | ||||||||||||||||| |||||||||    
T  12866553 catacccaaacccagtcaaaatggggaaaacccgtcaaattggatttggttcggacgggtaaccacatgtatgggttttgttg 12866471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 389
Target Start/End: Original strand, 35311900 - 35311946
Alignment:
Q  343 catacccaaattcattcaaaacggagaaaatccgtcaaattgggttt 389  Q
    |||||||||| ||| |||||||||| |||||||||||||||||||||    
T  35311900 catacccaaactcagtcaaaacggaaaaaatccgtcaaattgggttt 35311946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 329 - 402
Target Start/End: Original strand, 43523821 - 43523894
Alignment:
Q  329 ggaaaaccctaactcatacccaaattcattcaaaacggagaaaatccgtcaaattgggtttagtttgaatgggt 402  Q
    ||||||||| |||||||||||||| ||| ||||| |||  |||||||||||||| ||| || ||||| ||||||    
T  43523821 ggaaaacccaaactcatacccaaactcagtcaaatcgggaaaaatccgtcaaatcgggattggtttggatgggt 43523894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 329 - 425
Target Start/End: Original strand, 4920899 - 4920995
Alignment:
Q  329 ggaaaaccctaactcatacccaaattcattcaaaacggagaaaatccgtcaaattgggtttagtttgaatgggtaaccacatgtatgagttttgttg 425  Q
    |||||||||  || |||| |||||  || ||||||||||||||| |||||||||||||||| ||| |   ||||||||||  ||||| |||||||||    
T  4920899 ggaaaacccatacccataaccaaacccagtcaaaacggagaaaacccgtcaaattgggtttggttcgggcgggtaaccacgggtatgggttttgttg 4920995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 144
Target Start/End: Original strand, 12761546 - 12761578
Alignment:
Q  112 agcaattggagaatgaattggcttaccttagag 144  Q
    |||||||||||||||||||||||||||||||||    
T  12761546 agcaattggagaatgaattggcttaccttagag 12761578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 330 - 389
Target Start/End: Original strand, 30996670 - 30996728
Alignment:
Q  330 gaaaaccctaactcatacccaaattcattcaaaacggagaaaatccgtcaaattgggttt 389  Q
    ||||||||  |||||||||||||  || ||||||||| ||||||||||||||||||||||    
T  30996670 gaaaacccatactcatacccaaacccagtcaaaacgg-gaaaatccgtcaaattgggttt 30996728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 425
Target Start/End: Complemental strand, 33727988 - 33727921
Alignment:
Q  358 tcaaaacggagaaaatccgtcaaattgggtttagtttgaatgggtaaccacatgtatgagttttgttg 425  Q
    ||||||||| |||||||||||||||||||||| ||| |   ||||||||||  ||||| |||||||||    
T  33727988 tcaaaacggggaaaatccgtcaaattgggtttggttcgggcgggtaaccacgggtatgggttttgttg 33727921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 384
Target Start/End: Complemental strand, 2412763 - 2412687
Alignment:
Q  310 atacccgtgtttttaaattgg--aaaaccctaactcatacccaaattcattcaaaacggagaaaatccgtcaaattg 384  Q
    ||||||||||||| |||||||  ||||  | ||| |||||||||| ||| |||||| || |||||||||||||||||    
T  2412763 atacccgtgttttgaaattgggaaaaattcaaacccatacccaaactcaatcaaaatggggaaaatccgtcaaattg 2412687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 384
Target Start/End: Original strand, 29665024 - 29665096
Alignment:
Q  311 tacccgtgtttttaaattggaaaaccctaactcatacccaaattcattcaaaacggagaaaatccgtcaaattg 384  Q
    |||||||||||| |||| ||| ||||| ||||||||| |||| ||| ||||| |||| |||| |||||||||||    
T  29665024 tacccgtgttttgaaatcggagaacccaaactcatacacaaactcaatcaaagcgga-aaaacccgtcaaattg 29665096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 382
Target Start/End: Complemental strand, 18116532 - 18116480
Alignment:
Q  330 gaaaaccctaactcatacccaaattcattcaaaacggagaaaatccgtcaaat 382  Q
    |||||||| |||||||||||||| ||| ||||| |||  ||||||||||||||    
T  18116532 gaaaacccaaactcatacccaaactcagtcaaatcgggaaaaatccgtcaaat 18116480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 17 - 153
Target Start/End: Original strand, 9682635 - 9682781
Alignment:
Q  17 caagtaaatgttgaaattagggttatttatcataattaatatgacagatgacaaatttacaaagcaattttccaattcccaatt--------ctaaa--- 105  Q
    |||||||||||| ||||| ||||||||||||| |||||||||||||||||| | ||||||||||||||||| ||||||| ||||        |||||       
T  9682635 caagtaaatgttcaaatttgggttatttatcagaattaatatgacagatgagagatttacaaagcaatttt-caattccaaatttgaaaaccctaaacct 9682733  T
Q  106 agaagcagcaattggagaatgaattggcttaccttagagtgagtgaga 153  Q
    | ||  ||||||||||||||||||||| ||||||||||||||||||||    
T  9682734 aaaacaagcaattggagaatgaattgggttaccttagagtgagtgaga 9682781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 329 - 427
Target Start/End: Complemental strand, 4557320 - 4557222
Alignment:
Q  329 ggaaaaccctaactcatacccaaattcattcaaaacggagaaaatccgtcaaattgggtttagtttgaatgggtaaccacatgtatgagttttgttgtc 427  Q
    ||||||||| ||| ||||||||||  || |||||||||  |||| |||||||||||||||| ||| |  |||||||||||  |||||||||||||||||    
T  4557320 ggaaaacccaaacccatacccaaacccagtcaaaacgggaaaaacccgtcaaattgggttttgttcgggtgggtaaccacgggtatgagttttgttgtc 4557222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 106
Target Start/End: Complemental strand, 28213469 - 28213389
Alignment:
Q  19 agtaaatgttgaaattagggttatttatcataattaatatgacagatgacaaatttacaaagcaattttccaattcccaattctaaaa 106  Q
    |||||||||| ||||| || ||| |||||||||||||||| ||||||       ||||||||||||||||||||||||||||||||||    
T  28213469 agtaaatgttcaaatttggcttaattatcataattaatatcacagat-------ttacaaagcaattttccaattcccaattctaaaa 28213389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 343 - 425
Target Start/End: Original strand, 29284423 - 29284505
Alignment:
Q  343 catacccaaattcattcaaaacggagaaaatccgtcaaattgggtttagtttgaatgggtaaccacatgtatgagttttgttg 425  Q
    ||||||||||  || ||||||||||||||| |||||||||||||||| ||| |   ||||||||||  |||||||||||||||    
T  29284423 catacccaaacccagtcaaaacggagaaaacccgtcaaattgggtttggttcgggcgggtaaccacgggtatgagttttgttg 29284505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 310 - 425
Target Start/End: Complemental strand, 48390853 - 48390736
Alignment:
Q  310 atacccgtgtttttaaattgg--aaaaccctaactcatacccaaattcattcaaaacggagaaaatccgtcaaattgggtttagtttgaatgggtaacca 407  Q
    ||||||||||||| |||| ||  |||||||  || ||||||||||  || ||||||||| |||||||||||||||||| ||| ||| ||| ||||||||     
T  48390853 atacccgtgttttgaaatcggggaaaacccatacccatacccaaacccagtcaaaacggggaaaatccgtcaaattggatttggttcgaacgggtaaccg 48390754  T
Q  408 catgtatgagttttgttg 425  Q
    |  ||||| |||||||||    
T  48390753 cgggtatgggttttgttg 48390736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 340 - 425
Target Start/End: Original strand, 39728755 - 39728840
Alignment:
Q  340 actcatacccaaattcattcaaaacggagaaaatccgtcaaattgggtttagtttgaatgggtaaccacatgtatgagttttgttg 425  Q
    |||||||||||||  || ||||||||| |||||||||||||||||| ||| ||| | | ||||||||||  ||||| |||||||||    
T  39728755 actcatacccaaacccagtcaaaacggggaaaatccgtcaaattggatttggttcggacgggtaaccacgggtatgggttttgttg 39728840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 332 - 389
Target Start/End: Original strand, 42758450 - 42758507
Alignment:
Q  332 aaaccctaactcatacccaaattcattcaaaacggagaaaatccgtcaaattgggttt 389  Q
    |||||| ||||||||||||||  || | ||||||| ||||||||||||||||||||||    
T  42758450 aaacccaaactcatacccaaacccagttaaaacggggaaaatccgtcaaattgggttt 42758507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 343 - 427
Target Start/End: Original strand, 831089 - 831173
Alignment:
Q  343 catacccaaattcattcaaaacggagaaaatccgtcaaattgggtttagtttgaatgggtaaccacatgtatgagttttgttgtc 427  Q
    ||||||||||  || ||||||||| ||||| |||||||||| ||||| |||||   ||||||||||   ||||||||||||||||    
T  831089 catacccaaacccagtcaaaacggggaaaacccgtcaaatttggtttggtttgggcgggtaaccacggatatgagttttgttgtc 831173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 329 - 425
Target Start/End: Complemental strand, 7469793 - 7469697
Alignment:
Q  329 ggaaaaccctaactcatacccaaattcattcaaaacggagaaaatccgtcaaattgggtttagtttgaatgggtaaccacatgtatgagttttgttg 425  Q
    |||||||||  || ||||||||||  || ||||||||| ||||| |||||||||||||||| ||| |   ||||||||||  ||||| |||||||||    
T  7469793 ggaaaacccatacccatacccaaacccagtcaaaacggggaaaacccgtcaaattgggtttggttcgggcgggtaaccacgggtatgggttttgttg 7469697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 329 - 425
Target Start/End: Complemental strand, 39655288 - 39655192
Alignment:
Q  329 ggaaaaccctaactcatacccaaattcattcaaaacggagaaaatccgtcaaattgggtttagtttgaatgggtaaccacatgtatgagttttgttg 425  Q
    |||||||||  || ||||||||||  || ||||||||| ||||| |||||||||||||||| ||| |   ||||||||||  ||||| |||||||||    
T  39655288 ggaaaacccatacccatacccaaacccaatcaaaacggggaaaacccgtcaaattgggtttggttcgggcgggtaaccacgggtatgggttttgttg 39655192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 329 - 425
Target Start/End: Complemental strand, 44953450 - 44953354
Alignment:
Q  329 ggaaaaccctaactcatacccaaattcattcaaaacggagaaaatccgtcaaattgggtttagtttgaatgggtaaccacatgtatgagttttgttg 425  Q
    |||||||||  || || |||||||  || ||||||||| ||||| |||||||||||||||| ||| ||  ||||||||||  |||||| ||||||||    
T  44953450 ggaaaacccatacccaaacccaaacccagtcaaaacggggaaaacccgtcaaattgggtttggttcgagcgggtaaccacgggtatgaattttgttg 44953354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 427
Target Start/End: Original strand, 19111787 - 19111905
Alignment:
Q  311 tacccgtgtttttaaattgg--aaaaccctaactcatacccaaattcattcaaaacggagaaaatccgtcaaattgggtttagtttgaatgggtaaccac 408  Q
    |||||||||||| |||| ||  ||||| | ||||||||||||||  || |||||| ||  ||||||||||||||||| ||| ||||   || ||||||||    
T  19111787 tacccgtgttttgaaatcgggaaaaactcaaactcatacccaaacccaatcaaaaagggaaaaatccgtcaaattggatttggtttaggtgagtaaccac 19111886  T
Q  409 atgtatgagttttgttgtc 427  Q
       ||||||||||||||||    
T  19111887 ggatatgagttttgttgtc 19111905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 425
Target Start/End: Original strand, 34119708 - 34119825
Alignment:
Q  310 atacccgtgtttttaaattgg--aaaaccctaactcatacccaaattcattcaaaacggagaaaatccgtcaaattgggtttagtttgaatgggtaacca 407  Q
    ||||||||||||| |||| ||  ||||| | ||||||||||||||  || |||||| || ||||| |||||||||| | ||| ||| |  ||| ||||||    
T  34119708 atacccgtgttttaaaatcgggaaaaactcaaactcatacccaaacccaatcaaaatggggaaaacccgtcaaattagatttggttcgggtggttaacca 34119807  T
Q  408 catgtatgagttttgttg 425  Q
    |||| ||| |||||||||    
T  34119808 catggatgggttttgttg 34119825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 389
Target Start/End: Original strand, 42243462 - 42243520
Alignment:
Q  331 aaaaccctaactcatacccaaattcattcaaaacggagaaaatccgtcaaattgggttt 389  Q
    ||||||| ||||||||||||||  || ||||| ||| ||||| ||||||||||||||||    
T  42243462 aaaacccaaactcatacccaaacccagtcaaaccggggaaaacccgtcaaattgggttt 42243520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 190
Target Start/End: Original strand, 2388479 - 2388562
Alignment:
Q  115 aattggagaatgaattggcttaccttagagtga----gtgagaacta----agagagagtgagcaggcagcagctgagaagcac 190  Q
    ||||||||||| |||| |||||||||| |||||    ||||||||||    ||||||||||||||| ||| |||||||||||||    
T  2388479 aattggagaatcaatttgcttaccttaaagtgagaatgtgagaactaagagagagagagtgagcagacaggagctgagaagcac 2388562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 427
Target Start/End: Complemental strand, 10371259 - 10371190
Alignment:
Q  358 tcaaaacggagaaaatccgtcaaattgggtttagtttgaatgggtaaccacatgtatgagttttgttgtc 427  Q
    ||||||||| ||||| |||||||||||||||| ||| ||  ||||||||||  || || |||||||||||    
T  10371259 tcaaaacggggaaaacccgtcaaattgggtttggttcgagcgggtaaccacgggtctgggttttgttgtc 10371190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 385
Target Start/End: Original strand, 20087050 - 20087126
Alignment:
Q  311 tacccgtgtttttaaattgg--aaaaccctaactcatacccaaattcattcaaaacggagaaaatccgtcaaattgg 385  Q
    |||||||||||| |||| ||  |||||||  || |||| |||||  || ||||||||||||||||||||||||||||    
T  20087050 tacccgtgttttgaaatcggggaaaacccatacccatatccaaacccagtcaaaacggagaaaatccgtcaaattgg 20087126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 425
Target Start/End: Complemental strand, 4016059 - 4015963
Alignment:
Q  329 ggaaaaccctaactcatacccaaattcattcaaaacggagaaaatccgtcaaattgggtttagtttgaatgggtaaccacatgtatgagttttgttg 425  Q
    ||||||||| ||| ||||||||||   | |||||||||  |||| ||||||||||| |||| ||| |  |||||||||||  ||||| |||||||||    
T  4016059 ggaaaacccaaacccatacccaaacctagtcaaaacgggaaaaacccgtcaaattgagtttcgttcgggtgggtaaccacgggtatgggttttgttg 4015963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 425
Target Start/End: Complemental strand, 29858574 - 29858494
Alignment:
Q  345 tacccaaattcattcaaaacggagaaaatccgtcaaattgggtttagtttgaatgggtaaccacatgtatgagttttgttg 425  Q
    ||||||||  || ||||||||| |||||||||| ||||||||||| ||| |   ||||||||||  ||||| |||||||||    
T  29858574 tacccaaacccagtcaaaacggggaaaatccgttaaattgggtttggttcgggcgggtaaccacgggtatgggttttgttg 29858494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 162
Target Start/End: Complemental strand, 43136167 - 43136119
Alignment:
Q  115 aattggagaatgaattggcttacctt-agagtgagtgagaactaagaga 162  Q
    ||||||||||| ||||| |||||||| |||||||||||||||| |||||    
T  43136167 aattggagaatcaattgacttacctttagagtgagtgagaactgagaga 43136119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 425
Target Start/End: Original strand, 44639347 - 44639443
Alignment:
Q  329 ggaaaaccctaactcatacccaaattcattcaaaacggagaaaatccgtcaaattgggtttagtttgaatgggtaaccacatgtatgagttttgttg 425  Q
    |||||||||  || ||||||||||  || |||||| || ||||| | |||||||||||||| ||| | | ||||||||||   ||||||||||||||    
T  44639347 ggaaaacccatacccatacccaaacccagtcaaaatggggaaaaccagtcaaattgggtttcgttcggacgggtaaccacggatatgagttttgttg 44639443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 7e-19; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 329 - 425
Target Start/End: Original strand, 11028152 - 11028248
Alignment:
Q  329 ggaaaaccctaactcatacccaaattcattcaaaacggagaaaatccgtcaaattgggtttagtttgaatgggtaaccacatgtatgagttttgttg 425  Q
    |||||||||  || ||||||||||| || ||||||||||||||| |||||||||||||||| ||| |  ||||||||||| |||||| |||||||||    
T  11028152 ggaaaacccatacccatacccaaatccagtcaaaacggagaaaacccgtcaaattgggtttggttcgggtgggtaaccacgtgtatgggttttgttg 11028248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 329 - 425
Target Start/End: Original strand, 7609049 - 7609145
Alignment:
Q  329 ggaaaaccctaactcatacccaaattcattcaaaacggagaaaatccgtcaaattgggtttagtttgaatgggtaaccacatgtatgagttttgttg 425  Q
    |||||||||  || ||||||||||| || ||||||||| ||||| |||||||||||||||||||| |  |||||||||||  ||||| |||||||||    
T  7609049 ggaaaacccatacccatacccaaatccagtcaaaacggggaaaacccgtcaaattgggtttagttcgggtgggtaaccacgagtatgggttttgttg 7609145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 310 - 389
Target Start/End: Complemental strand, 6482072 - 6481991
Alignment:
Q  310 atacccgtgtttttaaattgg--aaaaccctaactcatacccaaattcattcaaaacggagaaaatccgtcaaattgggttt 389  Q
    |||||||||||||||||||||  ||||||| ||| ||||||||||  || ||||||| ||||||||||||||||||| ||||    
T  6482072 atacccgtgtttttaaattggggaaaacccaaacccatacccaaacccaatcaaaacagagaaaatccgtcaaattgagttt 6481991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 330 - 425
Target Start/End: Complemental strand, 11122884 - 11122789
Alignment:
Q  330 gaaaaccctaactcatacccaaattcattcaaaacggagaaaatccgtcaaattgggtttagtttgaatgggtaaccacatgtatgagttttgttg 425  Q
    ||||||||  || |||||||||| ||| |||||||||| |||||||||||||||| |||| ||| |   ||||||||||  |||||||||||||||    
T  11122884 gaaaacccatacccatacccaaactcagtcaaaacggaaaaaatccgtcaaattgagtttggttcgggcgggtaaccacgggtatgagttttgttg 11122789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 339 - 425
Target Start/End: Original strand, 26564920 - 26565006
Alignment:
Q  339 aactcatacccaaattcattcaaaacggagaaaatccgtcaaattgggtttagtttgaatgggtaaccacatgtatgagttttgttg 425  Q
    ||||||||||||||  || |||||||| ||||||||||||||||||| ||| ||| |  |||||||||||  ||||| |||||||||    
T  26564920 aactcatacccaaacccagtcaaaacgaagaaaatccgtcaaattggatttggttcgggtgggtaaccacgggtatgggttttgttg 26565006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 310 - 389
Target Start/End: Original strand, 39047010 - 39047091
Alignment:
Q  310 atacccgtgtttttaaattgg--aaaaccctaactcatacccaaattcattcaaaacggagaaaatccgtcaaattgggttt 389  Q
    ||||||||||||  |||||||  |||||||  || ||||| |||||||| ||||||||||||||| || |||||||||||||    
T  39047010 atacccgtgtttggaaattggggaaaacccatacccatactcaaattcagtcaaaacggagaaaacccatcaaattgggttt 39047091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 311 - 425
Target Start/End: Original strand, 37349171 - 37349287
Alignment:
Q  311 tacccgtgtttttaaattgg--aaaaccctaactcatacccaaattcattcaaaacggagaaaatccgtcaaattgggtttagtttgaatgggtaaccac 408  Q
    |||||||||||| |||| ||  ||||| | ||||||||||||||  || ||||||||| ||||| | |||||||||||||| ||| |   ||||||||||    
T  37349171 tacccgtgttttgaaatcggggaaaactcaaactcatacccaaacccagtcaaaacggggaaaacctgtcaaattgggtttggttcgggcgggtaaccac 37349270  T
Q  409 atgtatgagttttgttg 425  Q
      ||||| |||||||||    
T  37349271 gggtatgggttttgttg 37349287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 330 - 395
Target Start/End: Original strand, 39086237 - 39086302
Alignment:
Q  330 gaaaaccctaactcatacccaaattcattcaaaacggagaaaatccgtcaaattgggtttagtttg 395  Q
    |||||| | |||||||| |||||  || ||||||||||||||||||||||||||| |||| |||||    
T  39086237 gaaaactcaaactcatatccaaacccaatcaaaacggagaaaatccgtcaaattgagtttggtttg 39086302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 329 - 389
Target Start/End: Complemental strand, 31918574 - 31918514
Alignment:
Q  329 ggaaaaccctaactcatacccaaattcattcaaaacggagaaaatccgtcaaattgggttt 389  Q
    |||||||||  |||||||||||||  || ||||||||| ||||| ||||||||||||||||    
T  31918574 ggaaaacccatactcatacccaaacccagtcaaaacggggaaaacccgtcaaattgggttt 31918514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 343 - 427
Target Start/End: Original strand, 42299881 - 42299965
Alignment:
Q  343 catacccaaattcattcaaaacggagaaaatccgtcaaattgggtttagtttgaatgggtaaccacatgtatgagttttgttgtc 427  Q
    |||||| ||| ||| ||||| |||| |||| ||||||||||| |||| ||| | |||||||||| ||| ||||| ||||||||||    
T  42299881 catacctaaactcagtcaaaccggaaaaaacccgtcaaattgagtttggttcggatgggtaaccgcatatatgaattttgttgtc 42299965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 329 - 389
Target Start/End: Original strand, 44317614 - 44317674
Alignment:
Q  329 ggaaaaccctaactcatacccaaattcattcaaaacggagaaaatccgtcaaattgggttt 389  Q
    |||||||||  || ||||||||||  || ||||||||| ||||||||||||||||||||||    
T  44317614 ggaaaacccatacccatacccaaacccagtcaaaacggggaaaatccgtcaaattgggttt 44317674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 329 - 425
Target Start/End: Complemental strand, 55826639 - 55826543
Alignment:
Q  329 ggaaaaccctaactcatacccaaattcattcaaaacggagaaaatccgtcaaattgggtttagtttgaatgggtaaccacatgtatgagttttgttg 425  Q
    |||||||||  ||||||| |||||  || ||||||| | |||||||||||||||||| ||| ||| | | ||||||||||  ||||| |||||||||    
T  55826639 ggaaaacccatactcatatccaaacccagtcaaaacagggaaaatccgtcaaattggatttggttcggacgggtaaccacgggtatgggttttgttg 55826543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 389
Target Start/End: Complemental strand, 17113028 - 17112978
Alignment:
Q  339 aactcatacccaaattcattcaaaacggagaaaatccgtcaaattgggttt 389  Q
    ||||||| |||||| ||| ||||| ||||||||||||||||||||| ||||    
T  17113028 aactcattcccaaactcagtcaaagcggagaaaatccgtcaaattgtgttt 17112978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 147
Target Start/End: Complemental strand, 38819297 - 38819264
Alignment:
Q  114 caattggagaatgaattggcttaccttagagtga 147  Q
    |||||||||||||||||| |||||||||||||||    
T  38819297 caattggagaatgaattgacttaccttagagtga 38819264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 427
Target Start/End: Original strand, 39188610 - 39188679
Alignment:
Q  358 tcaaaacggagaaaatccgtcaaattgggtttagtttgaatgggtaaccacatgtatgagttttgttgtc 427  Q
    ||||||| || |||| || ||||||||||||||||| | |   |||||||| ||||||||||||||||||    
T  39188610 tcaaaacagaaaaaacccatcaaattgggtttagttcggacaagtaaccacgtgtatgagttttgttgtc 39188679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 343 - 388
Target Start/End: Original strand, 43553539 - 43553584
Alignment:
Q  343 catacccaaattcattcaaaacggagaaaatccgtcaaattgggtt 388  Q
    |||||||||| ||| ||||| ||||||||| |||||||||||||||    
T  43553539 catacccaaactcagtcaaagcggagaaaacccgtcaaattgggtt 43553584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 395
Target Start/End: Original strand, 19534538 - 19534594
Alignment:
Q  339 aactcatacccaaattcattcaaaacggagaaaatccgtcaaattgggtttagtttg 395  Q
    ||||||||||||||  || | ||||||||||||| |||||||||||| ||| |||||    
T  19534538 aactcatacccaaacccaatgaaaacggagaaaacccgtcaaattggatttggtttg 19534594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 421
Target Start/End: Original strand, 21423940 - 21424032
Alignment:
Q  329 ggaaaaccctaactcatacccaaattcattcaaaacggagaaaatccgtcaaattgggtttagtttgaatgggtaaccacatgtatgagtttt 421  Q
    |||||||||  || ||||||||||  || |||||||||  ||||||||||||||||| ||| ||| |   ||||||||||  |||||||||||    
T  21423940 ggaaaacccatacccatacccaaacccagtcaaaacgggaaaaatccgtcaaattggatttggttcgggcgggtaaccacgggtatgagtttt 21424032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 424
Target Start/End: Complemental strand, 47550354 - 47550274
Alignment:
Q  344 atacccaaattcattcaaaacggagaaaatccgtcaaattgggtttagtttgaatgggtaaccacatgtatgagttttgtt 424  Q
    |||||||||  || |||||| || ||||||||| ||||||| |||| ||| |   ||||||||||||||||| ||||||||    
T  47550354 atacccaaacccagtcaaaatggggaaaatccgccaaattgagtttggttcgggcgggtaaccacatgtatgggttttgtt 47550274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 115 - 163
Target Start/End: Original strand, 13388 - 13436
Alignment:
Q  115 aattggagaatgaattggcttaccttagagtgagtgagaactaagagag 163  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  13388 aattggagaatgaattggcttaccttagagtgagtgagaactgagagag 13436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 115 - 163
Target Start/End: Complemental strand, 9786 - 9738
Alignment:
Q  115 aattggagaatgaattggcttaccttagagtgagtgagaactaagagag 163  Q
    ||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  9786 aattggagaatgaattgacttaccttagagtgagtgagaactgagagag 9738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 115 - 163
Target Start/End: Original strand, 161508 - 161556
Alignment:
Q  115 aattggagaatgaattggcttaccttagagtgagtgagaactaagagag 163  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  161508 aattggagaatgaattggcttaccttagagtgagtgagaactgagagag 161556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 329 - 427
Target Start/End: Complemental strand, 14199 - 14101
Alignment:
Q  329 ggaaaaccctaactcatacccaaattcattcaaaacggagaaaatccgtcaaattgggtttagtttgaatgggtaaccacatgtatgagttttgttgtc 427  Q
    ||||||| | ||||||||||||||  ||  ||||||||  |||| |||||||||||||||| |||||  |||||||||||  |||||||||||||||||    
T  14199 ggaaaactcaaactcatacccaaacccaaacaaaacgggaaaaacccgtcaaattgggtttggtttgggtgggtaaccacgagtatgagttttgttgtc 14101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 310 - 425
Target Start/End: Complemental strand, 44615511 - 44615394
Alignment:
Q  310 atacccgtgtttttaaatt--ggaaaaccctaactcatacccaaattcattcaaaacggagaaaatccgtcaaattgggtttagtttgaatgggtaacca 407  Q
    ||||||||||||||||||   ||||||||| ||||||||||||||  || |||||||||  |||| ||||||||||| |||| || ||  ||||||||||    
T  44615511 atacccgtgtttttaaatcagggaaaacccaaactcatacccaaacccagtcaaaacgggaaaaacccgtcaaattgagtttggtctgggtgggtaacca 44615412  T
Q  408 catgtatgagttttgttg 425  Q
    |  ||||| |||||||||    
T  44615411 cgggtatgggttttgttg 44615394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 310 - 425
Target Start/End: Original strand, 44793058 - 44793175
Alignment:
Q  310 atacccgtgtttttaaatt--ggaaaaccctaactcatacccaaattcattcaaaacggagaaaatccgtcaaattgggtttagtttgaatgggtaacca 407  Q
    ||||||||||||||||||   ||||||||| ||||||||||||||  || |||||||||  |||| ||||||||||| |||| || ||  ||||||||||    
T  44793058 atacccgtgtttttaaatcagggaaaacccaaactcatacccaaacccagtcaaaacgggaaaaacccgtcaaattgagtttggtctgggtgggtaacca 44793157  T
Q  408 catgtatgagttttgttg 425  Q
    |  ||||| |||||||||    
T  44793158 cgggtatgggttttgttg 44793175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 310 - 408
Target Start/End: Complemental strand, 33293567 - 33293467
Alignment:
Q  310 atacccgtgtttttaaattgg--aaaaccctaactcatacccaaattcattcaaaacggagaaaatccgtcaaattgggtttagtttgaatgggtaacca 407  Q
    ||||||||||||| |||| ||  ||||||| ||||||||||||||  || |||||||||| ||||| ||||||| ||| ||||||| ||||||||| |||    
T  33293567 atacccgtgttttgaaatcgggaaaaacccaaactcatacccaaacccaatcaaaacggaaaaaattcgtcaaaatggatttagttcgaatgggtaccca 33293468  T
Q  408 c 408  Q
    |    
T  33293467 c 33293467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 158 - 203
Target Start/End: Complemental strand, 44351705 - 44351660
Alignment:
Q  158 agagagagtgagcaggcagcagctgagaagcaccagggggcagggg 203  Q
    |||||||||||||||||||||||||||||||||||||||| |||||    
T  44351705 agagagagtgagcaggcagcagctgagaagcaccagggggaagggg 44351660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 310 - 427
Target Start/End: Complemental strand, 34673318 - 34673199
Alignment:
Q  310 atacccgtgtttttaaattgg--aaaaccctaactcatacccaaattcattcaaaacggagaaaatccgtcaaattgggtttagtttgaatgggtaacca 407  Q
    ||||||||||||| |||||||  ||||||| ||| ||||||||||  || | |||| || |||||||||| ||||||||||| ||| |   |||||| ||    
T  34673318 atacccgtgttttgaaattgggaaaaacccaaacccatacccaaacccagttaaaatggggaaaatccgttaaattgggtttggttcgggcgggtaatca 34673219  T
Q  408 catgtatgagttttgttgtc 427  Q
    |  |||||||||||||||||    
T  34673218 ctggtatgagttttgttgtc 34673199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 313 - 425
Target Start/End: Complemental strand, 9982923 - 9982809
Alignment:
Q  313 cccgtgtttttaaattgg--aaaaccctaactcatacccaaattcattcaaaacggagaaaatccgtcaaattgggtttagtttgaatgggtaaccacat 410  Q
    |||||||||| |||||||  ||||  | ||||||||||||||  || |||||||||||||||||| ||||||||| ||| ||| |   | ||||||||      
T  9982923 cccgtgttttgaaattggggaaaattcaaactcatacccaaacccagtcaaaacggagaaaatccatcaaattggatttggttcgggagagtaaccacgg 9982824  T
Q  411 gtatgagttttgttg 425  Q
    |||||||||||||||    
T  9982823 gtatgagttttgttg 9982809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 340 - 427
Target Start/End: Original strand, 29936507 - 29936594
Alignment:
Q  340 actcatacccaaattcattcaaaacggagaaaatccgtcaaattgggtttagtttgaatgggtaaccacatgtatgagttttgttgtc 427  Q
    ||||||||||||| | | ||||||||| ||||| |||||||||||||||| ||| |   ||||||||||  ||||| |||||||||||    
T  29936507 actcatacccaaacttagtcaaaacggggaaaacccgtcaaattgggtttggttcgggcgggtaaccacgggtatgggttttgttgtc 29936594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 310 - 389
Target Start/End: Original strand, 16408995 - 16409076
Alignment:
Q  310 atacccgtgtttttaaattgg--aaaaccctaactcatacccaaattcattcaaaacggagaaaatccgtcaaattgggttt 389  Q
    ||||||||||||| |||||||  |||||||  || ||||||||||  || ||||||||| ||||| ||||||||||||||||    
T  16408995 atacccgtgttttgaaattggggaaaacccatacccatacccaaacccagtcaaaacggggaaaacccgtcaaattgggttt 16409076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 425
Target Start/End: Original strand, 20774654 - 20774736
Alignment:
Q  343 catacccaaattcattcaaaacggagaaaatccgtcaaattgggtttagtttgaatgggtaaccacatgtatgagttttgttg 425  Q
    ||||||||||  || ||||||||| |||||||||||||||||||||| ||| |   ||||||||||  ||||| |||||||||    
T  20774654 catacccaaacccagtcaaaacggggaaaatccgtcaaattgggtttggttcgggcgggtaaccacgagtatgggttttgttg 20774736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 330 - 427
Target Start/End: Complemental strand, 29871299 - 29871203
Alignment:
Q  330 gaaaaccctaactcatacccaaattcattcaaaacggagaaaatccgtcaaattgggtttagtttgaatgggtaaccacatgtatgagttttgttgtc 427  Q
    |||||||| |||||||||||||| | | ||||||||  ||||| ||||||||||| |||| | | | |||| |||||||  |||||||||||||||||    
T  29871299 gaaaacccaaactcatacccaaacttagtcaaaacgaggaaaacccgtcaaattgagttt-ggtcggatggataaccacgagtatgagttttgttgtc 29871203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 332 - 427
Target Start/End: Complemental strand, 5293418 - 5293323
Alignment:
Q  332 aaaccctaactcatacccaaattcattcaaaacggagaaaatccgtcaaattgggtttagtttgaatgggtaaccacatgtatgagttttgttgtc 427  Q
    |||||| ||||||||| ||||  || ||||| ||||||||| |||| |||||||||||||||     ||||| || |||||||| |||||||||||    
T  5293418 aaacccaaactcatactcaaacacagtcaaagcggagaaaacccgttaaattgggtttagttcaggcgggtatccgcatgtatgtgttttgttgtc 5293323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 427
Target Start/End: Original strand, 12495123 - 12495182
Alignment:
Q  368 gaaaatccgtcaaattgggtttagtttgaatgggtaaccacatgtatgagttttgttgtc 427  Q
    |||||||||||||||||| ||| |||    ||||||||||||||||||| ||||||||||    
T  12495123 gaaaatccgtcaaattggatttggttcaggtgggtaaccacatgtatgaattttgttgtc 12495182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 389
Target Start/End: Original strand, 17135000 - 17135081
Alignment:
Q  310 atacccgtgtttttaaattgg--aaaaccctaactcatacccaaattcattcaaaacggagaaaatccgtcaaattgggttt 389  Q
    ||||||||||||| |||| ||  |||||||  || || |||||||  || ||||||| ||||||||||||||||||||||||    
T  17135000 atacccgtgttttgaaatcggggaaaacccatacccacacccaaacccagtcaaaacagagaaaatccgtcaaattgggttt 17135081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 425
Target Start/End: Complemental strand, 19572548 - 19572431
Alignment:
Q  310 atacccgtgtttttaaattgg--aaaaccctaactcatacccaaattcattcaaaacggagaaaatccgtcaaattgggtttagtttgaatgggtaacca 407  Q
    ||||||||||||| |||| ||  |||||||  || ||||||||||  || |||||| || ||||| |||||||||| ||||| ||| |   |||||||||    
T  19572548 atacccgtgttttgaaatcgggaaaaacccatacccatacccaaacccagtcaaaatggggaaaacccgtcaaattaggtttggttcgggcgggtaacca 19572449  T
Q  408 catgtatgagttttgttg 425  Q
    || ||||| |||||||||    
T  19572448 caagtatgggttttgttg 19572431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 425
Target Start/End: Original strand, 28298034 - 28298116
Alignment:
Q  343 catacccaaattcattcaaaacggagaaaatccgtcaaattgggtttagtttgaatgggtaaccacatgtatgagttttgttg 425  Q
    ||||||||||| || ||||||| | ||||| |||||||||||| ||| ||| |  |||||||||||   ||||||||||||||    
T  28298034 catacccaaatccaatcaaaacagggaaaacccgtcaaattggatttggttcgggtgggtaaccacggatatgagttttgttg 28298116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 385
Target Start/End: Original strand, 34611161 - 34611203
Alignment:
Q  343 catacccaaattcattcaaaacggagaaaatccgtcaaattgg 385  Q
    |||||||||||||| ||||||||| ||||| ||||||||||||    
T  34611161 catacccaaattcaatcaaaacggggaaaacccgtcaaattgg 34611203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 389
Target Start/End: Original strand, 39616345 - 39616426
Alignment:
Q  310 atacccgtgtttttaaattgg--aaaaccctaactcatacccaaattcattcaaaacggagaaaatccgtcaaattgggttt 389  Q
    ||||||||||||| |||| ||  |||||||  ||||||||||||| ||| ||||||||| |||||  |||||||||| ||||    
T  39616345 atacccgtgttttgaaataggggaaaacccatactcatacccaaactcagtcaaaacggggaaaactcgtcaaattgagttt 39616426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 156
Target Start/End: Complemental strand, 45280886 - 45280839
Alignment:
Q  113 gcaattggagaatgaattggcttacc----ttagagtgagtgagaact 156  Q
    ||||||||||||||||||||||||||    ||||||||||||||||||    
T  45280886 gcaattggagaatgaattggcttaccttagttagagtgagtgagaact 45280839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 408
Target Start/End: Original strand, 2514811 - 2514911
Alignment:
Q  311 tacccgtgtttttaaattgg--aaaaccctaactcata-cccaaattcattcaaaacggagaaaatccgtcaaattgggtttagtttgaatgggtaacca 407  Q
    |||||||||||| |||||||  ||||||| |||||||| ||||||  || ||||||||| ||||| || |||| |||||||| ||||| | ||||| |||    
T  2514811 tacccgtgttttgaaattggggaaaacccaaactcataccccaaacccaatcaaaacggggaaaacccatcaagttgggtttggtttggacgggtaccca 2514910  T
Q  408 c 408  Q
    |    
T  2514911 c 2514911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 343 - 384
Target Start/End: Complemental strand, 40087465 - 40087424
Alignment:
Q  343 catacccaaattcattcaaaacggagaaaatccgtcaaattg 384  Q
    |||||||||| ||| ||||||||| |||||||||||||||||    
T  40087465 catacccaaactcagtcaaaacggggaaaatccgtcaaattg 40087424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 389
Target Start/End: Original strand, 23968653 - 23968713
Alignment:
Q  329 ggaaaaccctaactcatacccaaattcattcaaaacggagaaaatccgtcaaattgggttt 389  Q
    |||||||||  || ||||||||||  || |||||| || ||||||||||||||||||||||    
T  23968653 ggaaaacccatacccatacccaaacccaatcaaaatggggaaaatccgtcaaattgggttt 23968713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 329 - 425
Target Start/End: Original strand, 7780086 - 7780182
Alignment:
Q  329 ggaaaaccctaactcatacccaaattcattcaaaacggagaaaatccgtcaaattgggtttagtttgaatgggtaaccacatgtatgagttttgttg 425  Q
    |||||||||  || ||||||||||  || ||||||||| ||||||||||||||||| |||| ||| | ||||||||||||  ||||| |||||||||    
T  7780086 ggaaaacccatacccatacccaaacccagtcaaaacggggaaaatccgtcaaattgagtttggttcggatgggtaaccacgggtatgggttttgttg 7780182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 329 - 425
Target Start/End: Original strand, 17851930 - 17852026
Alignment:
Q  329 ggaaaaccctaactcatacccaaattcattcaaaacggagaaaatccgtcaaattgggtttagtttgaatgggtaaccacatgtatgagttttgttg 425  Q
    |||||||||  || ||||||||||  || |||||||||||||||||| ||||||||||||| ||| |   ||||||||||| ||||| |||||||||    
T  17851930 ggaaaacccatacccatacccaaacccagtcaaaacggagaaaatccatcaaattgggtttggttcgggcgggtaaccacaagtatgggttttgttg 17852026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 358 - 425
Target Start/End: Original strand, 24425475 - 24425542
Alignment:
Q  358 tcaaaacggagaaaatccgtcaaattgggtttagtttgaatgggtaaccacatgtatgagttttgttg 425  Q
    |||||||||||||||||||||||||||||||| ||| |    ||||||||| ||||||||||||||||    
T  24425475 tcaaaacggagaaaatccgtcaaattgggtttggttcgggctggtaaccacgtgtatgagttttgttg 24425542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 343 - 425
Target Start/End: Complemental strand, 44985919 - 44985837
Alignment:
Q  343 catacccaaattcattcaaaacggagaaaatccgtcaaattgggtttagtttgaatgggtaaccacatgtatgagttttgttg 425  Q
    ||||||||||  || |||||||||||||||||||||||||| | ||| ||| | |||||||||| |  |||||||||||||||    
T  44985919 catacccaaacccaatcaaaacggagaaaatccgtcaaattagatttggttcggatgggtaaccgcgagtatgagttttgttg 44985837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 310 - 425
Target Start/End: Complemental strand, 3226982 - 3226865
Alignment:
Q  310 atacccgtgtttttaaattgg--aaaaccctaactcatacccaaattcattcaaaacggagaaaatccgtcaaattgggtttagtttgaatgggtaacca 407  Q
    ||||||||||||| |||| ||  |||||||  || ||||| |||| ||| | ||||||  |||||||||||||||||||||| ||| | | ||||||||     
T  3226982 atacccgtgttttgaaatcggggaaaacccatacccatactcaaactcagttaaaacgaggaaaatccgtcaaattgggtttggttcggacgggtaaccg 3226883  T
Q  408 catgtatgagttttgttg 425  Q
    ||||||||  ||||||||    
T  3226882 catgtatggattttgttg 3226865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 425
Target Start/End: Complemental strand, 45885766 - 45885684
Alignment:
Q  343 catacccaaattcattcaaaacggagaaaatccgtcaaattgggtttagtttgaatgggtaaccacatgtatgagttttgttg 425  Q
    ||||||||||  || ||||||||||||||| |||| ||||||||||| ||| ||  ||||||||||  ||||| |||||||||    
T  45885766 catacccaaacccagtcaaaacggagaaaacccgttaaattgggtttggttcgagcgggtaaccacgggtatgggttttgttg 45885684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 329 - 389
Target Start/End: Original strand, 21702737 - 21702797
Alignment:
Q  329 ggaaaaccctaactcatacccaaattcattcaaaacggagaaaatccgtcaaattgggttt 389  Q
    |||||||||  |||||||||||||  || |||||||||  |||||||||||||||||||||    
T  21702737 ggaaaacccatactcatacccaaacccagtcaaaacgggaaaaatccgtcaaattgggttt 21702797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 329 - 425
Target Start/End: Original strand, 24753241 - 24753337
Alignment:
Q  329 ggaaaaccctaactcatacccaaattcattcaaaacggagaaaatccgtcaaattgggtttagtttgaatgggtaaccacatgtatgagttttgttg 425  Q
    |||||||||  || |||| |||||  || |||||||||||||||||||||||||||  ||| ||| | | ||||||||||  ||||| |||||||||    
T  24753241 ggaaaacccatacccatatccaaacccagtcaaaacggagaaaatccgtcaaattgaatttggttcggacgggtaaccacgggtatgggttttgttg 24753337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 329 - 425
Target Start/End: Original strand, 25905706 - 25905802
Alignment:
Q  329 ggaaaaccctaactcatacccaaattcattcaaaacggagaaaatccgtcaaattgggtttagtttgaatgggtaaccacatgtatgagttttgttg 425  Q
    |||||||||  || ||||||||||  || |||||| || ||||| | |||||||||||||||||| ||  ||||||||||  ||||| |||||||||    
T  25905706 ggaaaacccatacccatacccaaacccagtcaaaaaggggaaaacctgtcaaattgggtttagttcgagcgggtaaccacgggtatgggttttgttg 25905802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 425
Target Start/End: Original strand, 30650738 - 30650805
Alignment:
Q  358 tcaaaacggagaaaatccgtcaaattgggtttagtttgaatgggtaaccacatgtatgagttttgttg 425  Q
    ||||||||| ||||| |||||||||||||||| ||| |   ||||||||||  |||||||||||||||    
T  30650738 tcaaaacggggaaaacccgtcaaattgggtttggttcgggcgggtaaccacgggtatgagttttgttg 30650805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 330 - 425
Target Start/End: Complemental strand, 44785272 - 44785177
Alignment:
Q  330 gaaaaccctaactcatacccaaattcattcaaaacggagaaaatccgtcaaattgggtttagtttgaatgggtaaccacatgtatgagttttgttg 425  Q
    ||||||||  || |||||||||| | | ||||||||| |||||  |||||||||||||||  || |   |||||||||||||||||| ||||||||    
T  44785272 gaaaacccatacccatacccaaacttagtcaaaacggggaaaactcgtcaaattgggtttgattcgggcgggtaaccacatgtatgaattttgttg 44785177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 389
Target Start/End: Original strand, 10072523 - 10072604
Alignment:
Q  310 atacccgtgtttttaaattgg--aaaaccctaactcatacccaaattcattcaaaacggagaaaatccgtcaaattgggttt 389  Q
    ||||||||||||| |||| ||  |||||||  || ||||||||||  || ||||||||| ||||| ||||||||||||||||    
T  10072523 atacccgtgttttgaaatcggggaaaacccatacccatacccaaacccagtcaaaacggggaaaacccgtcaaattgggttt 10072604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 425
Target Start/End: Complemental strand, 27850333 - 27850251
Alignment:
Q  343 catacccaaattcattcaaaacggagaaaatccgtcaaattgggtttagtttgaatgggtaaccacatgtatgagttttgttg 425  Q
    ||||||||||  || ||||||||| ||||| |||||||||||||||| ||| |   ||||||||||   ||||||||||||||    
T  27850333 catacccaaacccaatcaaaacggggaaaaaccgtcaaattgggtttggttcgggcgggtaaccacggatatgagttttgttg 27850251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 425
Target Start/End: Original strand, 16866247 - 16866343
Alignment:
Q  329 ggaaaaccctaactcatacccaaattcattcaaaacggagaaaatccgtcaaattgggtttagtttgaatgggtaaccacatgtatgagttttgttg 425  Q
    |||||||||  || |||| |||||  || ||||||||| ||||| |||||||||||||||| ||| |   ||||||||||   ||||||||||||||    
T  16866247 ggaaaacccatacccataaccaaacccagtcaaaacggggaaaacccgtcaaattgggtttggttcgggcgggtaaccacggatatgagttttgttg 16866343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 155
Target Start/End: Original strand, 36906804 - 36906844
Alignment:
Q  115 aattggagaatgaattggcttaccttagagtgagtgagaac 155  Q
    ||||||||||| |||||||||| || |||||||||||||||    
T  36906804 aattggagaatcaattggcttatctcagagtgagtgagaac 36906844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 427
Target Start/End: Original strand, 37218093 - 37218181
Alignment:
Q  339 aactcatacccaaattcattcaaaacggagaaaatccgtcaaattgggtttagtttgaatgggtaaccacatgtatgagttttgttgtc 427  Q
    ||||||||||||||  || ||||||||| ||||| || |||||||| |||| ||| |  |||||| || |  |||||||||||||||||    
T  37218093 aactcatacccaaacccagtcaaaacggggaaaacccatcaaattgagtttggttcgggtgggtatccgctggtatgagttttgttgtc 37218181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 329 - 425
Target Start/End: Complemental strand, 19104852 - 19104756
Alignment:
Q  329 ggaaaaccctaactcatacccaaattcattcaaaacggagaaaatccgtcaaattgggtttagtttgaatgggtaaccacatgtatgagttttgttg 425  Q
    ||||||||| ||||||||||||||  || |||||||||| |||| || |||||||||||||  || | || |||||||||||||||  |||||||||    
T  19104852 ggaaaacccaaactcatacccaaacccaatcaaaacggaaaaaacccatcaaattgggtttgattcggattggtaaccacatgtataggttttgttg 19104756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 310 - 427
Target Start/End: Original strand, 37106745 - 37106864
Alignment:
Q  310 atacccgtgtttttaaattgg--aaaaccctaactcatacccaaattcattcaaaacggagaaaatccgtcaaattgggtttagtttgaatgggtaacca 407  Q
    ||||||||||||| |||| ||  |||||||  || |||||||||| ||| ||||||||| ||||| |||||||||||||||| ||| |   ||||||||     
T  37106745 atacccgtgttttgaaatcggggaaaacccatacccatacccaaactcagtcaaaacggggaaaacccgtcaaattgggtttggttcgggcgggtaaccg 37106844  T
Q  408 catgtatgagttttgttgtc 427  Q
    |  |||||||||||||||||    
T  37106845 cgagtatgagttttgttgtc 37106864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 329 - 425
Target Start/End: Original strand, 12341674 - 12341770
Alignment:
Q  329 ggaaaaccctaactcatacccaaattcattcaaaacggagaaaatccgtcaaattgggtttagtttgaatgggtaaccacatgtatgagttttgttg 425  Q
    |||||||||  || |||||||||| ||| ||||||||| ||||| |||||||||||||||| ||| | | || ||||| |  |||||||||||||||    
T  12341674 ggaaaacccatacccatacccaaactcagtcaaaacggggaaaacccgtcaaattgggtttggttcggacggataaccgcgggtatgagttttgttg 12341770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 425
Target Start/End: Complemental strand, 24414133 - 24414051
Alignment:
Q  343 catacccaaattcattcaaaacggagaaaatccgtcaaattgggtttagtttgaatgggtaaccacatgtatgagttttgttg 425  Q
    ||||||||||  || ||||||||| ||||| |||||||||||||||| ||| |   ||||||||||| ||||| |||||||||    
T  24414133 catacccaaacccaatcaaaacggggaaaacccgtcaaattgggtttggttcgggcgggtaaccacaggtatgggttttgttg 24414051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 115 - 165
Target Start/End: Original strand, 25342828 - 25342878
Alignment:
Q  115 aattggagaatgaattggcttaccttagagtgagtgagaactaagagagag 165  Q
    |||| ||||||||||||||||||| ||||||||||||||||  ||||||||    
T  25342828 aattagagaatgaattggcttaccatagagtgagtgagaaccgagagagag 25342878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 115 - 165
Target Start/End: Complemental strand, 25344964 - 25344914
Alignment:
Q  115 aattggagaatgaattggcttaccttagagtgagtgagaactaagagagag 165  Q
    |||||| ||||||||||||||||| ||||||||||||||||  ||||||||    
T  25344964 aattggggaatgaattggcttaccatagagtgagtgagaaccgagagagag 25344914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 329 - 425
Target Start/End: Original strand, 30847020 - 30847116
Alignment:
Q  329 ggaaaaccctaactcatacccaaattcattcaaaacggagaaaatccgtcaaattgggtttagtttgaatgggtaaccacatgtatgagttttgttg 425  Q
    |||||||||  || ||||||||||  || ||||||||| ||||| |||||||||||||||| ||| |   ||||||||||  ||||| |||||||||    
T  30847020 ggaaaacccatacccatacccaaacccagtcaaaacggggaaaacccgtcaaattgggtttggttcgggcgggtaaccacgggtatgggttttgttg 30847116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 329 - 389
Target Start/End: Complemental strand, 44746124 - 44746064
Alignment:
Q  329 ggaaaaccctaactcatacccaaattcattcaaaacggagaaaatccgtcaaattgggttt 389  Q
    ||||||||| ||  |||||||||| ||| ||||||||| ||||| ||||||||||||||||    
T  44746124 ggaaaacccaaatccatacccaaactcaatcaaaacggggaaaacccgtcaaattgggttt 44746064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 427
Target Start/End: Original strand, 13830809 - 13830907
Alignment:
Q  329 ggaaaaccctaactcatacccaaattcattcaaaacggagaaaatccgtcaaattgggtttagtttgaatgggtaaccacatgtatgagttttgttgtc 427  Q
    |||||||||  || ||||||||||  || |||||| || ||||| |||||||||||||||| ||| |   ||||||||||  ||||| |||||||||||    
T  13830809 ggaaaacccatacccatacccaaacccagtcaaaatggggaaaacccgtcaaattgggtttggttcgggcgggtaaccacgggtatgggttttgttgtc 13830907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 425
Target Start/End: Complemental strand, 36128107 - 36128025
Alignment:
Q  343 catacccaaattcattcaaaacggagaaaatccgtcaaattgggtttagtttgaatgggtaaccacatgtatgagttttgttg 425  Q
    ||||||||||  || ||||||||| |||||||||||||||| ||||| ||| | | | ||||||||  ||||| |||||||||    
T  36128107 catacccaaacccagtcaaaacggggaaaatccgtcaaattaggtttggttcggacgagtaaccacgggtatgggttttgttg 36128025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 106
Target Start/End: Original strand, 13558962 - 13558994
Alignment:
Q  74 tacaaagcaattttccaattcccaattctaaaa 106  Q
    |||||||||||||||| ||||||||||||||||    
T  13558962 tacaaagcaattttcctattcccaattctaaaa 13558994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 420
Target Start/End: Complemental strand, 34214692 - 34214582
Alignment:
Q  311 tacccgtgtttttaaattgg--aaaaccctaactcatacccaaattcattcaaaacggagaaaatccgtcaaattgggtttagtttgaatgggtaaccac 408  Q
    |||||||||||| ||||||   ||||| | |||||||||  |||  || ||||| |||| |||| ||||||||||||||||||||||| || ||| || |    
T  34214692 tacccgtgttttgaaattgagaaaaactcaaactcatacaaaaacccaatcaaagcggaaaaaa-ccgtcaaattgggtttagtttgagtgagtacccgc 34214594  T
Q  409 atgtatgagttt 420  Q
    ||||||| ||||    
T  34214593 atgtatgggttt 34214582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 310 - 425
Target Start/End: Complemental strand, 5858688 - 5858571
Alignment:
Q  310 atacccgtgtttttaaattgg--aaaaccctaactcatacccaaattcattcaaaacggagaaaatccgtcaaattgggtttagtttgaatgggtaacca 407  Q
    |||||||||||||||||| ||  ||||||| ||| ||||||||||  || ||||||||| ||||| |||||||||||| ||| ||| |  | ||||||||    
T  5858688 atacccgtgtttttaaatcgggaaaaacccaaacccatacccaaacccaatcaaaacggggaaaacccgtcaaattggatttggttcgggtaggtaacca 5858589  T
Q  408 catgtatgagttttgttg 425  Q
    || |||||  ||||||||    
T  5858588 caggtatggattttgttg 5858571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 329 - 389
Target Start/End: Original strand, 1012691 - 1012751
Alignment:
Q  329 ggaaaaccctaactcatacccaaattcattcaaaacggagaaaatccgtcaaattgggttt 389  Q
    ||||||||| |||||||||||||| ||| ||||||||  ||||| ||||||||||||||||    
T  1012691 ggaaaacccaaactcatacccaaactcaatcaaaacgaggaaaacccgtcaaattgggttt 1012751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 389
Target Start/End: Complemental strand, 2075835 - 2075789
Alignment:
Q  343 catacccaaattcattcaaaacggagaaaatccgtcaaattgggttt 389  Q
    ||||||||||  || ||||||||||||||||||||||||||||||||    
T  2075835 catacccaaacccagtcaaaacggagaaaatccgtcaaattgggttt 2075789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 310 - 425
Target Start/End: Original strand, 20399644 - 20399761
Alignment:
Q  310 atacccgtgtttttaaattgga--aaaccctaactcatacccaaattcattcaaaacggagaaaatccgtcaaattgggtttagtttgaatgggtaacca 407  Q
    ||||||||||||| |||| |||  |||||| ||| ||||||||||  || ||||||||| |||||  ||||||||||||||| ||| ||  |||||||||    
T  20399644 atacccgtgttttgaaatcggagaaaacccaaacccatacccaaacccagtcaaaacggggaaaactcgtcaaattgggtttggttcgagcgggtaacca 20399743  T
Q  408 catgtatgagttttgttg 425  Q
    |  ||||  |||||||||    
T  20399744 cgggtattggttttgttg 20399761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 329 - 425
Target Start/End: Complemental strand, 4230745 - 4230649
Alignment:
Q  329 ggaaaaccctaactcatacccaaattcattcaaaacggagaaaatccgtcaaattgggtttagtttgaatgggtaaccacatgtatgagttttgttg 425  Q
    |||||||||  || ||||||||||  || |||||| || ||||| |||||||||||||||| ||| |   |||||||||||||||||  ||||||||    
T  4230745 ggaaaacccatacccatacccaaacccagtcaaaatggggaaaacccgtcaaattgggtttggttcgggcgggtaaccacatgtatggattttgttg 4230649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 425
Target Start/End: Original strand, 17469345 - 17469412
Alignment:
Q  358 tcaaaacggagaaaatccgtcaaattgggtttagtttgaatgggtaaccacatgtatgagttttgttg 425  Q
    ||||||||| |||||||||||||||||||||| ||| |  |||||||| ||  ||||| |||||||||    
T  17469345 tcaaaacggggaaaatccgtcaaattgggtttggttcgggtgggtaactacgggtatgggttttgttg 17469412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 389
Target Start/End: Original strand, 14155584 - 14155665
Alignment:
Q  310 atacccgtgtttttaaattgg--aaaaccctaactcatacccaaattcattcaaaacggagaaaatccgtcaaattgggttt 389  Q
    ||||||||||||| |||| ||  ||||||| ||||||||||||||  || ||| | ||| ||||| ||||||||||||||||    
T  14155584 atacccgtgttttgaaatcgggaaaaacccaaactcatacccaaacccagtcataccggggaaaacccgtcaaattgggttt 14155665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 389
Target Start/End: Original strand, 27932465 - 27932546
Alignment:
Q  310 atacccgtgtttttaaattgg--aaaaccctaactcatacccaaattcattcaaaacggagaaaatccgtcaaattgggttt 389  Q
    ||||||||||||| |||| ||  |||||||  || ||||||||||  || ||||||||| ||||| ||||||||||||||||    
T  27932465 atacccgtgttttgaaatcggggaaaacccatacccatacccaaacccagtcaaaacggggaaaacccgtcaaattgggttt 27932546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 385
Target Start/End: Complemental strand, 29416192 - 29416146
Alignment:
Q  339 aactcatacccaaattcattcaaaacggagaaaatccgtcaaattgg 385  Q
    |||||||||||||| ||| ||||||||| ||||| ||||||||||||    
T  29416192 aactcatacccaaactcagtcaaaacggggaaaacccgtcaaattgg 29416146  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 389
Target Start/End: Complemental strand, 6388551 - 6388471
Alignment:
Q  311 tacccgtgtttttaaattgg--aaaaccctaactcatacccaaattcattcaaaacggagaaaatccgtcaaattgggttt 389  Q
    |||||||||||| |||| ||  || |||| ||| |||||||||| ||| ||||||||||||||  ||||||||||| ||||    
T  6388551 tacccgtgttttaaaatcggggaagacccaaacccatacccaaactcagtcaaaacggagaaagcccgtcaaattgagttt 6388471  T

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Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 427
Target Start/End: Complemental strand, 11255001 - 11254932
Alignment:
Q  358 tcaaaacggagaaaatccgtcaaattgggtttagtttgaatgggtaaccacatgtatgagttttgttgtc 427  Q
    |||||||||| |||| |||||||||||| ||| ||| | |  ||||||| |||||||| |||||||||||    
T  11255001 tcaaaacggaaaaaacccgtcaaattggatttggttcggacaggtaaccgcatgtatgggttttgttgtc 11254932  T

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Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 427
Target Start/End: Original strand, 14186410 - 14186479
Alignment:
Q  358 tcaaaacggagaaaatccgtcaaattgggtttagtttgaatgggtaaccacatgtatgagttttgttgtc 427  Q
    ||||||||||||||| |||||||||  |||||  || ||| | ||||||||  |||||||||||||||||    
T  14186410 tcaaaacggagaaaacccgtcaaatcaggtttgattagaacgagtaaccacgagtatgagttttgttgtc 14186479  T

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Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 389
Target Start/End: Original strand, 24928022 - 24928082
Alignment:
Q  329 ggaaaaccctaactcatacccaaattcattcaaaacggagaaaatccgtcaaattgggttt 389  Q
    |||||||||  || ||||||||||  || ||||||||| ||||| ||||||||||||||||    
T  24928022 ggaaaacccatacccatacccaaacccagtcaaaacggggaaaacccgtcaaattgggttt 24928082  T

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Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 389
Target Start/End: Original strand, 32303134 - 32303194
Alignment:
Q  329 ggaaaaccctaactcatacccaaattcattcaaaacggagaaaatccgtcaaattgggttt 389  Q
    |||||||||  || ||||||||||  || ||||||||| ||||| ||||||||||||||||    
T  32303134 ggaaaacccatacccatacccaaacccagtcaaaacggggaaaacccgtcaaattgggttt 32303194  T

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Target: scaffold0027 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 310 - 425
Target Start/End: Original strand, 7749 - 7865
Alignment:
Q  310 atacccgtgtttttaaattgga-aaaccctaactcatacccaaattcattcaaaacggagaaaatccgtcaaattgggtttagtttgaatgggtaaccac 408  Q
    ||||||||||||| |||||||| |||  ||||| |||||||||| ||| ||||||||| ||||| ||||||||||   ||||||| |  |||||||||||    
T  7749 atacccgtgttttgaaattggagaaaatctaacacatacccaaactcaatcaaaacggggaaaacccgtcaaattaaatttagttcgggtgggtaaccac 7848  T
Q  409 atgtatgagttttgttg 425  Q
      |||||  ||||||||    
T  7849 gggtatggattttgttg 7865  T

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Target: scaffold0022 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 421
Target Start/End: Original strand, 90678 - 90756
Alignment:
Q  343 catacccaaattcattcaaaacggagaaaatccgtcaaattgggtttagtttgaatgggtaaccacatgtatgagtttt 421  Q
    ||||||||||  || ||||||||| ||||||||||||||||| |||||||| |   ||||||||||  |||||||||||    
T  90678 catacccaaacccagtcaaaacggggaaaatccgtcaaattgagtttagttcgggcgggtaaccacgggtatgagtttt 90756  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 425
Target Start/End: Original strand, 31496521 - 31496603
Alignment:
Q  343 catacccaaattcattcaaaacggagaaaatccgtcaaattgggtttagtttgaatgggtaaccacatgtatgagttttgttg 425  Q
    ||||||||||  || ||||||||| ||||| ||||||||||| |||| ||||| | ||||||||||  ||||| |||||||||    
T  31496521 catacccaaacccagtcaaaacggggaaaacccgtcaaattgagtttggtttggacgggtaaccacgggtatgggttttgttg 31496603  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 425
Target Start/End: Original strand, 31501907 - 31501989
Alignment:
Q  343 catacccaaattcattcaaaacggagaaaatccgtcaaattgggtttagtttgaatgggtaaccacatgtatgagttttgttg 425  Q
    ||||||||||  || ||||||||| ||||| ||||||||||| |||| ||||| | ||||||||||  ||||| |||||||||    
T  31501907 catacccaaacccagtcaaaacggggaaaacccgtcaaattgagtttggtttggacgggtaaccacgggtatgggttttgttg 31501989  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 329 - 425
Target Start/End: Complemental strand, 10188095 - 10187999
Alignment:
Q  329 ggaaaaccctaactcatacccaaattcattcaaaacggagaaaatccgtcaaattgggtttagtttgaatgggtaaccacatgtatgagttttgttg 425  Q
    |||||||||  || ||||||||||  || ||||||||| ||||| |||||||||||||||| ||| |   ||||||||||  ||||| |||||||||    
T  10188095 ggaaaacccatacccatacccaaacccagtcaaaacggggaaaacccgtcaaattgggtttggttcgggcgggtaaccacgggtatgggttttgttg 10187999  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 329 - 425
Target Start/End: Original strand, 30986326 - 30986422
Alignment:
Q  329 ggaaaaccctaactcatacccaaattcattcaaaacggagaaaatccgtcaaattgggtttagtttgaatgggtaaccacatgtatgagttttgttg 425  Q
    |||||||||  || |||||||||| ||| ||||||||| ||||| ||||||||||| |||| ||| |   ||||||||||  ||||| |||||||||    
T  30986326 ggaaaacccatacccatacccaaactcagtcaaaacggggaaaacccgtcaaattgagtttggttcgggcgggtaaccacgggtatgggttttgttg 30986422  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 389
Target Start/End: Complemental strand, 5863419 - 5863338
Alignment:
Q  310 atacccgtgtttttaaattgg--aaaaccctaactcatacccaaattcattcaaaacggagaaaatccgtcaaattgggttt 389  Q
    ||||||||||||| |||| ||  |||||||  || ||||||||||  || ||||||||| ||||| ||||||||||||||||    
T  5863419 atacccgtgttttgaaatcggggaaaacccatacccatacccaaacccagtcaaaacggggaaaacccgtcaaattgggttt 5863338  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 389
Target Start/End: Original strand, 15498411 - 15498457
Alignment:
Q  343 catacccaaattcattcaaaacggagaaaatccgtcaaattgggttt 389  Q
    ||||||||||  |||||||||||||||||| |||| |||||||||||    
T  15498411 catacccaaacccattcaaaacggagaaaacccgttaaattgggttt 15498457  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 389
Target Start/End: Complemental strand, 3483938 - 3483878
Alignment:
Q  329 ggaaaaccctaactcatacccaaattcattcaaaacggagaaaatccgtcaaattgggttt 389  Q
    |||||||||  || ||||||||||  || ||||||||| ||||| ||||||||||||||||    
T  3483938 ggaaaacccatacacatacccaaacccagtcaaaacggggaaaacccgtcaaattgggttt 3483878  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 389
Target Start/End: Original strand, 32853917 - 32853977
Alignment:
Q  329 ggaaaaccctaactcatacccaaattcattcaaaacggagaaaatccgtcaaattgggttt 389  Q
    |||||||||  || |||| |||||  || ||||||||||||||| ||||||||||||||||    
T  32853917 ggaaaacccatacccataaccaaacccagtcaaaacggagaaaacccgtcaaattgggttt 32853977  T

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Target: scaffold0519 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 358 - 427
Target Start/End: Original strand, 10392 - 10461
Alignment:
Q  358 tcaaaacggagaaaatccgtcaaattgggtttagtttgaatgggtaaccacatgtatgagttttgttgtc 427  Q
    |||||||||| |||| |||||||||||| ||| ||| | |  ||||||| |||||||| |||||||||||    
T  10392 tcaaaacggaaaaaacccgtcaaattggatttggttcggacaggtaaccgcatgtatgggttttgttgtc 10461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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