View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7165_low_7 (Length: 424)
Name: NF7165_low_7
Description: NF7165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7165_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 152; Significance: 2e-80; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 34584729 - 34584545
Alignment:
| Q |
1 |
agtatgagtaaacacacttcaactgaatagaagataatttcaaaacaatttattgaagaaaagattcaagggactcttgacaacatattcaaaagcaaga |
100 |
Q |
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| T |
34584729 |
agtatgagtaaacactcttcaactgaataaaagataatttcaaaacaatttattgaagaaaagattcaagggactcttgacaacatatacaaaagcaaga |
34584630 |
T |
|
| Q |
101 |
gtaaaaatgaatggacatttatatatctaaaaaataacagacattgaatccctctttttaagtcctgttttcttgtacagtccacttatcc |
191 |
Q |
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| T |
34584629 |
gtaaaaatgaatggacatttatatatctaaaaaataacagacattga------ctttttaagtcctgttttcttgaacagtccacttatcc |
34584545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 195 - 282
Target Start/End: Original strand, 34583071 - 34583158
Alignment:
| Q |
195 |
tttttaactcaatttttgccatggcgaccaatgtcactctcccaataaccctccagataacaacaaaactctaataaagagtcgacaa |
282 |
Q |
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| T |
34583071 |
tttttaactcaatttttgccatggcgaccaatgtcactctcccaataaccctccagataacaacaaaactctaataaagagtcgacaa |
34583158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 34586167 - 34586015
Alignment:
| Q |
1 |
agtatgagtaaacacacttcaactga--atagaagataatttcaaaacaatttattgaagaaaaga----ttcaagggactcttgacaacatattcaaaa |
94 |
Q |
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||||||||||||||||||||| |||| ||| ||||||||||||||||||| |||||||||||||| || ||||||||| ||||||||| ||||| |
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| T |
34586167 |
agtatgagtaaacacacttcacctgatcataaaagataatttcaaaacaatctattgaagaaaagaaagatttcagggactcta-acaacatatacaaaa |
34586069 |
T |
|
| Q |
95 |
gcaagagtaaaaatgaatggacatttatatatctaaaaaataacagacattgaatccctcttttt |
159 |
Q |
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| T |
34586068 |
gcaagagtaaaaa-----------ttatataactaaaatataacagactttgaatccctcttttt |
34586015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 19179842 - 19179735
Alignment:
| Q |
1 |
agtatgagtaaacacacttcaactga--atagaagataatttcaaaacaatttattgaagaaaagattcaagggactcttgacaacatattcaaaagcaa |
98 |
Q |
| |
|
|||||||||||||||||| |||||| ||| |||| |||||||||||||| |||| ||||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
19179842 |
agtatgagtaaacacact-caactgctcataaaagacaatttcaaaacaatctatttaagaaaagattcaagggactc-tgacaacatatacaaaagcaa |
19179745 |
T |
|
| Q |
99 |
gagtaaaaat |
108 |
Q |
| |
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|||||||||| |
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| T |
19179744 |
gagtaaaaat |
19179735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 1478222 - 1478115
Alignment:
| Q |
1 |
agtatgagtaaacacacttcaactga--atagaagataatttcaaaacaatttattgaagaaaagattcaagggactcttgacaacatattcaaaagcaa |
98 |
Q |
| |
|
|||||||||||||||||| |||||| ||| |||| |||||||||||||| |||| ||||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
1478222 |
agtatgagtaaacacact-caactgctcataaaagacaatttcaaaacaatctatttaagaaaagattcaagggactc-tgacaacatatacaaaagcaa |
1478125 |
T |
|
| Q |
99 |
gagtaaaaat |
108 |
Q |
| |
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|||| ||||| |
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|
| T |
1478124 |
gagttaaaat |
1478115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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