View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7166_high_1 (Length: 482)

Name: NF7166_high_1
Description: NF7166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7166_high_1
NF7166_high_1
[»] chr3 (5 HSPs)
chr3 (18-218)||(34143008-34143208)
chr3 (281-472)||(34142754-34142945)
chr3 (57-161)||(548210-548314)
chr3 (48-161)||(43819811-43819926)
chr3 (169-215)||(8584449-8584495)
[»] scaffold0245 (2 HSPs)
scaffold0245 (48-161)||(11213-11326)
scaffold0245 (48-161)||(9591-9704)
[»] chr1 (3 HSPs)
chr1 (48-161)||(1284946-1285059)
chr1 (63-149)||(35891387-35891473)
chr1 (133-204)||(17309803-17309874)
[»] chr4 (11 HSPs)
chr4 (46-161)||(10032555-10032670)
chr4 (46-161)||(18812538-18812653)
chr4 (46-218)||(15041561-15041733)
chr4 (46-218)||(15112691-15112863)
chr4 (46-218)||(15039832-15040004)
chr4 (46-218)||(15114420-15114592)
chr4 (45-218)||(16003524-16003696)
chr4 (57-123)||(18789208-18789274)
chr4 (57-162)||(8678645-8678750)
chr4 (60-157)||(8818634-8818731)
chr4 (60-145)||(25843550-25843635)
[»] chr5 (1 HSPs)
chr5 (48-159)||(4897301-4897412)
[»] chr6 (7 HSPs)
chr6 (45-161)||(25050981-25051097)
chr6 (46-117)||(6271298-6271369)
chr6 (133-218)||(34244754-34244839)
chr6 (152-218)||(30580020-30580085)
chr6 (69-161)||(6257951-6258042)
chr6 (133-197)||(13214013-13214076)
chr6 (115-161)||(6232810-6232856)
[»] scaffold0229 (1 HSPs)
scaffold0229 (48-161)||(9919-10032)
[»] chr7 (3 HSPs)
chr7 (46-214)||(10868012-10868181)
chr7 (46-214)||(10866295-10866463)
chr7 (84-196)||(20186153-20186264)
[»] chr8 (1 HSPs)
chr8 (133-215)||(30187766-30187848)
[»] chr2 (1 HSPs)
chr2 (60-148)||(23748593-23748681)


Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 218
Target Start/End: Complemental strand, 34143208 - 34143008
Alignment:
Q  18 aaaataaagagagcagatccatcatgtttatcagaaacaataggatcaaagagatgaaggtgaagttcataggagatgtaggctttagaggtagaaacaa 117  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||    
T  34143208 aaaataaagagggcagatccatcatgtttatcagaaacaataggatcaaagagatgaaggtgaagttcataggagaagtaggcattagaggtagaaacaa 34143109  T
Q  118 aggaataatccttgtaattcatattgaattagattgaaaaagattgcatgaatgagtacatggttggtccttttatagaactcaattaccctaactactt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34143108 aggaataatccttgtaattcatattgaattagattgaaaaagattgcatgaatgagtacatggttggtccttttatagaactcaattaccctaactactt 34143009  T
Q  218 g 218  Q
    |    
T  34143008 g 34143008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 281 - 472
Target Start/End: Complemental strand, 34142945 - 34142754
Alignment:
Q  281 gttatctcaataatgttcaaaaaggaaattctagagtgccagttttctgaaggcttcggtatgacagttcacagaatagcttctttttctttttgttgat 380  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  34142945 gttatctcaacaatgttcaaaaaggaaattctagagtgccagttttctgaaggcttcggtatgacaattcacagaatagcttctttttctttttgttgat 34142846  T
Q  381 gactcagataaattttgtacaacttggtttgtttcacacactaatatagggctcttggcttcttggtttattttcttataatttgttatgat 472  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  34142845 gactcagataaattttgtacaacttggtttgtttcacacaccaatacagggctcttggcttcttggtttattttcttataatttgttatgat 34142754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 57 - 161
Target Start/End: Complemental strand, 548314 - 548210
Alignment:
Q  57 ataggatcaaagagatgaaggtgaagttcataggagatgtaggctttagaggtagaaacaaaggaataatccttgtaattcatattgaattagattgaaa 156  Q
    |||||||||||||||||||| |||| ||||||||||| || | | |||||| |||||||||||||||||||||||||||||||||||||||||| |||||    
T  548314 ataggatcaaagagatgaagatgaacttcataggagaagtggacattagagatagaaacaaaggaataatccttgtaattcatattgaattagaatgaaa 548215  T
Q  157 aagat 161  Q
    |||||    
T  548214 aagat 548210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 48 - 161
Target Start/End: Original strand, 43819811 - 43819926
Alignment:
Q  48 tcagaaacaataggatcaaagagatgaaggtgaagttcataggagatgtaggctttagaggtagaaacaaaggaataatccttgtaattcatattg--aa 145  Q
    |||||||| ||||||||||| || ||||| |||| |||||| |||| ||| | || | | || || ||||| ||||||||||| ||||||||||||  ||    
T  43819811 tcagaaacgataggatcaaaaaggtgaagatgaatttcataagagaagtatgattgataagttgatacaaaagaataatccttataattcatattgaaaa 43819910  T
Q  146 ttagattgaaaaagat 161  Q
    ||||| ||||||||||    
T  43819911 ttagaatgaaaaagat 43819926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 169 - 215
Target Start/End: Complemental strand, 8584495 - 8584449
Alignment:
Q  169 atgagtacatggttggtccttttatagaactcaattaccctaactac 215  Q
    |||||||||||||||||||||||||||| |||||||  |||||||||    
T  8584495 atgagtacatggttggtccttttatagacctcaattttcctaactac 8584449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0245 (Bit Score: 94; Significance: 1e-45; HSPs: 2)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 48 - 161
Target Start/End: Complemental strand, 11326 - 11213
Alignment:
Q  48 tcagaaacaataggatcaaagagatgaaggtgaagttcataggagatgtaggctttagaggtagaaacaaaggaataatccttgtaattcatattgaatt 147  Q
    |||||||| |||||||| ||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  11326 tcagaaacgataggatcgaagagatgaagatgaagttcataggagaagtaggccttagaggtagaaacaaaggaataatccttgtaattcatattgaatt 11227  T
Q  148 agattgaaaaagat 161  Q
    ||||||||||||||    
T  11226 agattgaaaaagat 11213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0245; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 48 - 161
Target Start/End: Complemental strand, 9704 - 9591
Alignment:
Q  48 tcagaaacaataggatcaaagagatgaaggtgaagttcataggagatgtaggctttagaggtagaaacaaaggaataatccttgtaattcatattgaatt 147  Q
    |||||||| |||||||| || ||| |||| |||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  9704 tcagaaacgataggatcgaatagacgaagatgaagttcataggagaagtaggccttagaggtagaaacagaggaataatccttgtaattcatattgaatt 9605  T
Q  148 agattgaaaaagat 161  Q
    ||||||||||||||    
T  9604 agattgaaaaagat 9591  T

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Target: chr1 (Bit Score: 94; Significance: 1e-45; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 48 - 161
Target Start/End: Complemental strand, 1285059 - 1284946
Alignment:
Q  48 tcagaaacaataggatcaaagagatgaaggtgaagttcataggagatgtaggctttagaggtagaaacaaaggaataatccttgtaattcatattgaatt 147  Q
    |||||||| |||||||| ||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  1285059 tcagaaacgataggatcgaagagatgaagatgaagttcataggagaagtaggccttagaggtagaaacaaaggaataatccttgtaattcatattgaatt 1284960  T
Q  148 agattgaaaaagat 161  Q
    ||||||||||||||    
T  1284959 agattgaaaaagat 1284946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 63 - 149
Target Start/End: Original strand, 35891387 - 35891473
Alignment:
Q  63 tcaaagagatgaaggtgaagttcataggagatgtaggctttagaggtagaaacaaaggaataatccttgtaattcatattgaattag 149  Q
    ||||| |||| |||||||||||||||||||| |||| | | |||||| || ||||||||||||||||||| ||| ||||||||||||    
T  35891387 tcaaaaagataaaggtgaagttcataggagaagtagacatgagaggttgatacaaaggaataatccttgtcatttatattgaattag 35891473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 133 - 204
Target Start/End: Original strand, 17309803 - 17309874
Alignment:
Q  133 aattcatattgaattagattgaaaaagattgcatgaatgagtacatggttggtcct-tttatagaactcaatt 204  Q
    |||||||||||||||  |||||||||||||  || ||||||||||||| ||||| | |||||||| |||||||    
T  17309803 aattcatattgaattgtattgaaaaagatt-aattaatgagtacatggatggtcttatttatagacctcaatt 17309874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 92; Significance: 2e-44; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 46 - 161
Target Start/End: Original strand, 10032555 - 10032670
Alignment:
Q  46 tatcagaaacaataggatcaaagagatgaaggtgaagttcataggagatgtaggctttagaggtagaaacaaaggaataatccttgtaattcatattgaa 145  Q
    |||||||||| |||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||    
T  10032555 tatcagaaactataggatcaaagagatgaagatgaagttcataggagaagtaggcattagaggtagaaacaaaggaatagtccttgtaattcatattgaa 10032654  T
Q  146 ttagattgaaaaagat 161  Q
    ||||| ||||||||||    
T  10032655 ttagaatgaaaaagat 10032670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 46 - 161
Target Start/End: Original strand, 18812538 - 18812653
Alignment:
Q  46 tatcagaaacaataggatcaaagagatgaaggtgaagttcataggagatgtaggctttagaggtagaaacaaaggaataatccttgtaattcatattgaa 145  Q
    |||| ||||| |||||||||||||||||||| |||||||||||||||| |||||| | ||||||||||||||| ||||||||||||||||||||||||||    
T  18812538 tatcggaaactataggatcaaagagatgaagatgaagttcataggagaagtaggcatgagaggtagaaacaaaagaataatccttgtaattcatattgaa 18812637  T
Q  146 ttagattgaaaaagat 161  Q
    ||||||||||||||||    
T  18812638 ttagattgaaaaagat 18812653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 46 - 218
Target Start/End: Original strand, 15041561 - 15041733
Alignment:
Q  46 tatcagaaacaataggatcaaagagatgaaggtgaagttcataggagatgtaggctttagaggtagaaacaaaggaataatccttgtaattcatattgaa 145  Q
    ||||||||| |||||||||||||||||  || | |  ||||||||||| ||| | || | ||| ||||||| ||| | || ||||  |||||||||||||    
T  15041561 tatcagaaataataggatcaaagagattgagattagcttcataggagaagtatgattgataggaagaaacatagggaaaacccttagaattcatattgaa 15041660  T
Q  146 ttagattgaaaaagattgcatgaatgagtacatggttggtccttttatagaactcaattaccctaactacttg 218  Q
    ||  ||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  15041661 ttgtattgaaaaagattacatgaatgagtacatggttggtccttttatagacctcaatgaccctaactacttg 15041733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 46 - 218
Target Start/End: Complemental strand, 15112863 - 15112691
Alignment:
Q  46 tatcagaaacaataggatcaaagagatgaaggtgaagttcataggagatgtaggctttagaggtagaaacaaaggaataatccttgtaattcatattgaa 145  Q
    ||||||||| |||||||||||||||||  || | |  ||||||||||| ||| | || | ||| ||||||| ||| | || ||||  |||||||||||||    
T  15112863 tatcagaaataataggatcaaagagattgagattagcttcataggagaagtatgattgataggaagaaacatagggaaaacccttagaattcatattgaa 15112764  T
Q  146 ttagattgaaaaagattgcatgaatgagtacatggttggtccttttatagaactcaattaccctaactacttg 218  Q
    ||  ||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  15112763 ttgtattgaaaaagattacatgaatgagtacatggttggtccttttatagacctcaatgaccctaactacttg 15112691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 46 - 218
Target Start/End: Original strand, 15039832 - 15040004
Alignment:
Q  46 tatcagaaacaataggatcaaagagatgaaggtgaagttcataggagatgtaggctttagaggtagaaacaaaggaataatccttgtaattcatattgaa 145  Q
    ||||||||| |||||||||||||||||  || | |  ||||||||||| ||| | || | ||| ||||| | ||| | || ||||  |||||||| ||||    
T  15039832 tatcagaaataataggatcaaagagattgagattagcttcataggagaagtatgattgataggaagaaatatagggaaaacccttagaattcatagtgaa 15039931  T
Q  146 ttagattgaaaaagattgcatgaatgagtacatggttggtccttttatagaactcaattaccctaactacttg 218  Q
    ||  ||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  15039932 ttgtattgaaaaagattacatgaatgagtacatggttggtccttttatagacctcaatgaccctaactacttg 15040004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 46 - 218
Target Start/End: Complemental strand, 15114592 - 15114420
Alignment:
Q  46 tatcagaaacaataggatcaaagagatgaaggtgaagttcataggagatgtaggctttagaggtagaaacaaaggaataatccttgtaattcatattgaa 145  Q
    ||||||||| |||||||||||||||||  || | |  ||||||||||| ||| | || | ||| ||||| | ||| | || ||||  |||||||| ||||    
T  15114592 tatcagaaataataggatcaaagagattgagattagcttcataggagaagtatgattgataggaagaaatatagggaaaacccttagaattcatagtgaa 15114493  T
Q  146 ttagattgaaaaagattgcatgaatgagtacatggttggtccttttatagaactcaattaccctaactacttg 218  Q
    ||  ||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  15114492 ttgtattgaaaaagattacatgaatgagtacatggttggtccttttatagacctcaatgaccctaactacttg 15114420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 45 - 218
Target Start/End: Complemental strand, 16003696 - 16003524
Alignment:
Q  45 ttatcagaaacaataggatcaaagagatgaaggtgaagttcataggagatgtaggctttagaggtagaaacaaaggaataatccttgtaattcatattga 144  Q
    |||||||||| |||||||||||||||||  || | || ||||||||| | |||   || | ||| ||||||| ||||| ||  |||  |||||||  | |    
T  16003696 ttatcagaaataataggatcaaagagattgagattaacttcataggaaaagtataattgataggaagaaacataggaaaaactcttagaattcattataa 16003597  T
Q  145 attagattgaaaaagattgcatgaatgagtacatggttggtccttttatagaactcaattaccctaactacttg 218  Q
    |||  ||| |||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  16003596 attgtatttaaaaagattg-atgaatgagtatatggttggtccttttatagacctcaattaccctaactacttg 16003524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 57 - 123
Target Start/End: Original strand, 18789208 - 18789274
Alignment:
Q  57 ataggatcaaagagatgaaggtgaagttcataggagatgtaggctttagaggtagaaacaaaggaat 123  Q
    |||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||| ||||    
T  18789208 ataggatcaaagagatgaagatgaagttcataggagaagtaggcattagaggtagaaacaaaagaat 18789274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 57 - 162
Target Start/End: Complemental strand, 8678750 - 8678645
Alignment:
Q  57 ataggatcaaagagatgaaggtgaagttcataggagatgtaggctttagaggtagaaacaaaggaataatccttgtaattcatattgaattagattgaaa 156  Q
    |||||||| || |||||||| |||| ||||||||||| |||||||| | |||||||||  ||| |||||||||||||||||||||| ||||| | |||||    
T  8678750 ataggatcgaatagatgaagatgaaattcataggagaagtaggcttgataggtagaaaataagaaataatccttgtaattcatattcaattaaaatgaaa 8678651  T
Q  157 aagatt 162  Q
    | ||||    
T  8678650 acgatt 8678645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 60 - 157
Target Start/End: Original strand, 8818634 - 8818731
Alignment:
Q  60 ggatcaaagagatgaaggtgaagttcataggagatgtaggctttagaggtagaaacaaaggaataatccttgtaattcatattgaattagattgaaaa 157  Q
    ||||| ||||||||||| ||||||| |||||||| |||||| | |||| | || ||||||||||||||||| | ||| |||||||||||||| |||||    
T  8818634 ggatcgaagagatgaagatgaagtttataggagaagtaggcatgagagattgatacaaaggaataatccttatgatttatattgaattagatagaaaa 8818731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 60 - 145
Target Start/End: Complemental strand, 25843635 - 25843550
Alignment:
Q  60 ggatcaaagagatgaaggtgaagttcataggagatgtaggctttagaggtagaaacaaaggaataatccttgtaattcatattgaa 145  Q
    ||||||||||| ||||  |||| ||||||||||| ||| |||| | ||||||||||||||||||||||||| |  |||||||||||    
T  25843635 ggatcaaagagttgaatatgaacttcataggagaggtaagcttgataggtagaaacaaaggaataatccttatgtttcatattgaa 25843550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 48 - 159
Target Start/End: Original strand, 4897301 - 4897412
Alignment:
Q  48 tcagaaacaataggatcaaagagatgaaggtgaagttcataggagatgtaggctttagaggtagaaacaaaggaataatccttgtaattcatattgaatt 147  Q
    |||||||| |||||||||||||||||||| |||| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  4897301 tcagaaacgataggatcaaagagatgaagatgaacttcataggagaagtaggcattagaggtagaaacaaaggaataatccttgtaattcatattgaatt 4897400  T
Q  148 agattgaaaaag 159  Q
    ||| ||||||||    
T  4897401 agaatgaaaaag 4897412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 85; Significance: 3e-40; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 45 - 161
Target Start/End: Complemental strand, 25051097 - 25050981
Alignment:
Q  45 ttatcagaaacaataggatcaaagagatgaaggtgaagttcataggagatgtaggctttagaggtagaaacaaaggaataatccttgtaattcatattga 144  Q
    |||||| ||||  ||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  25051097 ttatcataaactgtaggatcaaagagatgaagatgaagttcataggagaagtaggcattagaggtagaaacaaaggaataatctttgtaattcatattga 25050998  T
Q  145 attagattgaaaaagat 161  Q
    |||| ||||||||||||    
T  25050997 attaaattgaaaaagat 25050981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 46 - 117
Target Start/End: Original strand, 6271298 - 6271369
Alignment:
Q  46 tatcagaaacaataggatcaaagagatgaaggtgaagttcataggagatgtaggctttagaggtagaaacaa 117  Q
    |||||||||| |||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||    
T  6271298 tatcagaaactataggatcaaagagatgaagatgaagttcataggagaagtaggcattagaggtagaaacaa 6271369  T

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Target: chr6; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 133 - 218
Target Start/End: Complemental strand, 34244839 - 34244754
Alignment:
Q  133 aattcatattgaattagattgaaaaagattgcatgaatgagtacatggttggtccttttatagaactcaattaccctaactacttg 218  Q
    |||||||  ||||||  |||||||||||||  ||||||||||| |||||||||||||||||||| |||||| ||| ||||||||||    
T  34244839 aattcattatgaattgtattgaaaaagattatatgaatgagtatatggttggtccttttatagacctcaatgaccttaactacttg 34244754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 152 - 218
Target Start/End: Original strand, 30580020 - 30580085
Alignment:
Q  152 tgaaaaagattgcatgaatgagtacatggttggtccttttatagaactcaattaccctaactacttg 218  Q
    |||||||||||| |||||||||| |||||||| || | ||||||| |||||||||||||||||||||    
T  30580020 tgaaaaagattg-atgaatgagttcatggttgatcatattatagacctcaattaccctaactacttg 30580085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 69 - 161
Target Start/End: Complemental strand, 6258042 - 6257951
Alignment:
Q  69 agatgaaggtgaagttcataggagatgtaggctttagaggtagaaacaaaggaataatccttgtaattcatattgaattagattgaaaaagat 161  Q
    |||||||| |||| ||||||||||| |||||||| | || | || ||||||||||| ||||| |  ||||||||| |||||||||||| ||||    
T  6258042 agatgaagatgaatttcataggagaagtaggcttgatagcttgatacaaaggaatactccttatgtttcatattg-attagattgaaagagat 6257951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 133 - 197
Target Start/End: Original strand, 13214013 - 13214076
Alignment:
Q  133 aattcatattgaattagattgaaaaagattgcatgaatgagtacatggttggtccttttatagaa 197  Q
    |||||||  ||||||  ||| |||||||||| |||||| ||||||||||||||||||||||||||    
T  13214013 aattcattatgaattgtattaaaaaagattg-atgaataagtacatggttggtccttttatagaa 13214076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 115 - 161
Target Start/End: Complemental strand, 6232856 - 6232810
Alignment:
Q  115 caaaggaataatccttgtaattcatattgaattagattgaaaaagat 161  Q
    |||| |||||||||||||  |||||||||||||||||||| ||||||    
T  6232856 caaaagaataatccttgtgtttcatattgaattagattgataaagat 6232810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 48 - 161
Target Start/End: Complemental strand, 10032 - 9919
Alignment:
Q  48 tcagaaacaataggatcaaagagatgaaggtgaagttcataggagatgtaggctttagaggtagaaacaaaggaataatccttgtaattcatattgaatt 147  Q
    |||||||| |||||||| || ||| |||| |||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  10032 tcagaaacgataggatcgaatagacgaagatgaagttcataggagaagtaggccttagaggtagaaacagaggaataatccttgtaattcatattgaatt 9933  T
Q  148 agattgaaaaagat 161  Q
    ||||||||||||||    
T  9932 agattgaaaaagat 9919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 6e-29; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 46 - 214
Target Start/End: Complemental strand, 10868181 - 10868012
Alignment:
Q  46 tatcagaaacaataggatcaaagagatgaaggtgaagttcataggagatgtaggctttagaggtagaaacaaagg-aataatccttgtaattcatattga 144  Q
    ||||||||| |||||||||||||||||  || | || |||| | |||| ||| | || | ||| ||||||| ||| || || ||||  ||||||||||||    
T  10868181 tatcagaaataataggatcaaagagattgagattaacttcagaagagaagtatgattgataggaagaaacatagggaaaaacccttagaattcatattga 10868082  T
Q  145 attagattgaaaaagattgcatgaatgagtacatggttggtccttttatagaactcaattaccctaacta 214  Q
    |||  |||||||||||||  |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  10868081 attgtattgaaaaagattatatgaatgagtacatggttggtccttttatagacctcaattaccctaacta 10868012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 46 - 214
Target Start/End: Complemental strand, 10866463 - 10866295
Alignment:
Q  46 tatcagaaacaataggatcaaagagatgaaggtgaagttcataggagatgtaggctttagaggtagaaacaaaggaataatccttgtaattcatattgaa 145  Q
    ||||||||| |||||||||||||||||  || | || ||||||  ||| ||| | || | | | ||||||| ||| | || ||||  |||||||||| ||    
T  10866463 tatcagaaataataggatcaaagagattgagattaacttcataaaagaagtatgattgatatgaagaaacatagggaaaacccttagaattcatattaaa 10866364  T
Q  146 ttagattgaaaaagattgcatgaatgagtacatggttggtccttttatagaactcaattaccctaacta 214  Q
    ||  ||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||    
T  10866363 ttgtattgaaaaagattacatgaatgagtacatggttggtccttttataaatctcaattaccctaacta 10866295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 84 - 196
Target Start/End: Complemental strand, 20186264 - 20186153
Alignment:
Q  84 tcataggagatgtaggctttagaggtagaaacaaaggaataatccttgtaattcatattgaattagattgaaaaagattgcatgaatgagtacatggttg 183  Q
    |||||||||| ||| | || | ||| ||||||| ||| | || ||||  |||||||||||||||  |||||||||||||  |||||||||||||||||||    
T  20186264 tcataggagaagtatgattgataggaagaaacatagggaaaacccttagaattcatattgaattgtattgaaaaagatta-atgaatgagtacatggttg 20186166  T
Q  184 gtccttttataga 196  Q
     ||||| ||||||    
T  20186165 atccttatataga 20186153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 133 - 215
Target Start/End: Original strand, 30187766 - 30187848
Alignment:
Q  133 aattcatattgaattagattgaaaaagattgcatgaatgagtacatggttggtccttttatagaactcaattaccctaactac 215  Q
    |||||||  ||||||  ||||||||| ||| |||||||||||||||| |||||||||||||||| ||||||| || |||||||    
T  30187766 aattcattatgaattgtattgaaaaaaattacatgaatgagtacatgattggtccttttatagacctcaatttccttaactac 30187848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 60 - 148
Target Start/End: Complemental strand, 23748681 - 23748593
Alignment:
Q  60 ggatcaaagagatgaaggtgaagttcataggagatgtaggctttagaggtagaaacaaaggaataatccttgtaattcatattgaatta 148  Q
    ||||| ||||||||||| |||  | ||||||||| |||||||| | |||| |||||| ||||| || || |  ||||||||||||||||    
T  23748681 ggatcgaagagatgaagatgagctccataggagaagtaggcttgataggttgaaacataggaaaaacccgtagaattcatattgaatta 23748593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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