View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7166_low_2 (Length: 381)
Name: NF7166_low_2
Description: NF7166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7166_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 11 - 316
Target Start/End: Original strand, 22475343 - 22475635
Alignment:
| Q |
11 |
acatcaacaatgggtttggaaggtgttcttctcggtatgggtaatcccctcctcgacatctctgctgtcgtcgatgaagatttcttgaaaaagtacgttg |
110 |
Q |
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| T |
22475343 |
acatcaacaatgggtttggaaggtgttcttctcggtatgggtaatcccctcctcgacatctctgctgtcgtcgatgaagatttcttgaaaaagtacgttg |
22475442 |
T |
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| Q |
111 |
catcttatcactctttttaaaacttttaatgaaaaacaagaatcaataatggttttgatcatttgtttacaggtttgacatccagttgaacaatgctatt |
210 |
Q |
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| T |
22475443 |
catcttatcactctttttaaaacttttaatgaa-------------ttatggttttgatgatttgtttacaggtttgacatccagttgaacaatgctatt |
22475529 |
T |
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| Q |
211 |
ctcgctgaagacaaacacaaatctatgtaagttgaacaatgctttcaataatcttatagttctttaggataatcttcagtttagcttatttatttgagtt |
310 |
Q |
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| T |
22475530 |
ctcgctgaagacaaacacaaatctatgtaagttgaacaatgctttcaataatcttatagttctttaggataatcttcagtttagcttatttatttgagtt |
22475629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 334 - 367
Target Start/End: Original strand, 22475638 - 22475671
Alignment:
| Q |
334 |
ctaattcaggatttgattttggtgtaattatcat |
367 |
Q |
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| T |
22475638 |
ctaattcaggatttgattttggtgtaattatcat |
22475671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 19 - 109
Target Start/End: Complemental strand, 28171058 - 28170968
Alignment:
| Q |
19 |
aatgggtttggaaggtgttcttctcggtatgggtaatcccctcctcgacatctctgctgtcgtcgatgaagatttcttgaaaaagtacgtt |
109 |
Q |
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| T |
28171058 |
aatggctttggaaggtgttcttctcggtatgggtaatccccttctcgacatctctgctgtcgtcgatgaagatttcttgaaaaagtacgtt |
28170968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 176 - 241
Target Start/End: Complemental strand, 28170878 - 28170813
Alignment:
| Q |
176 |
tttacaggtttgacatccagttgaacaatgctattctcgctgaagacaaacacaaatctatgtaag |
241 |
Q |
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| T |
28170878 |
tttacaggtttgatatccagttgaacaatgccattctcgctgaagataagcacaaatctatgtaag |
28170813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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