View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7166_low_4 (Length: 331)

Name: NF7166_low_4
Description: NF7166
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7166_low_4
NF7166_low_4
[»] chr3 (2 HSPs)
chr3 (12-321)||(19607165-19607474)
chr3 (46-180)||(4576624-4576755)
[»] chr1 (1 HSPs)
chr1 (12-304)||(32604599-32604888)
[»] chr2 (3 HSPs)
chr2 (12-304)||(21022890-21023179)
chr2 (46-180)||(7230748-7230879)
chr2 (46-180)||(7230422-7230553)
[»] chr8 (3 HSPs)
chr8 (12-304)||(24956496-24956785)
chr8 (12-304)||(18176326-18176615)
chr8 (83-180)||(29564540-29564634)
[»] scaffold0005 (1 HSPs)
scaffold0005 (54-180)||(175922-176045)
[»] chr4 (2 HSPs)
chr4 (54-180)||(14641247-14641370)
chr4 (46-180)||(26110691-26110822)
[»] scaffold0020 (1 HSPs)
scaffold0020 (83-180)||(131180-131274)


Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 12 - 321
Target Start/End: Original strand, 19607165 - 19607474
Alignment:
Q  12 atggacatcagaggtgaccgcaatttgagcattttcaacttcattatgaccttcagatgcttcagttaactgctcaaatgtgtttctcatagttgttgtc 111  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  19607165 atggacattagaggtgaccgcaatttgagccttttcaacttcattatgaccttcagatgcttcagttaaccgctcaaatgtgtttctcatagttgttgtc 19607264  T
Q  112 gtcccaacctttgcatttccctttgtcactttctctccattaatatctggtgaaacctttctttactttttgggtttagtattttccagagggataaatt 211  Q
    |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19607265 gtcccaacctttgcctttccctttgtcactttctctcaattaatatctggtgaaacctttctttactttttgggtttagtattttccagagggataaatt 19607364  T
Q  212 ggtcaccaatatcaaattcactatcatcagagtcaattatttcttgtggcacatttgtagtagtatttttgccattaaattcaaatggcacacttaaagt 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19607365 ggtcaccaatatcaaattcactatcatcagagtcaattatttcttgtggcacatttgtagtagtatttttgccattaaattcaaatggcacacttaaagt 19607464  T
Q  312 tgatgtccat 321  Q
    ||||||||||    
T  19607465 tgatgtccat 19607474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 46 - 180
Target Start/End: Original strand, 4576624 - 4576755
Alignment:
Q  46 tcaacttcattatgaccttcagatgcttcagttaactgctcaaatgtgtttctcatagttgttgtcgtcccaacctttgcatttccctttgtcactttct 145  Q
    |||| ||||||||||||||| | ||||| |  |||  ||||||||||| |||||||||||||||| |||||| ||||||  || |||||||| ||||||     
T  4576624 tcaatttcattatgaccttctgctgcttgaactaatcgctcaaatgtgattctcatagttgttgtagtcccagcctttgtcttaccctttgtaactttca 4576723  T
Q  146 ctccattaatatctggtgaaacctttctttacttt 180  Q
    | ||    |||||||||||||| ||||||| ||||    
T  4576724 cacc---catatctggtgaaacatttcttttcttt 4576755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 12 - 304
Target Start/End: Complemental strand, 32604888 - 32604599
Alignment:
Q  12 atggacatcagaggtgaccgcaatttgagcattttcaacttcattatgaccttcagatgcttcagttaactgctcaaatgtgtttctcatagttgttgtc 111  Q
    |||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||  ||||| |  |||| |||||||||| |||||||||||||||||     
T  32604888 atggacatgagaggtggccgcaatttgagccttttcaacttcattatgaccttcatctgctttaactaaccgctcaaatgtttttctcatagttgttgtt 32604789  T
Q  112 gtcccaacctttgcatttccctttgtcactttctctccattaatatctggtgaaacctttctttactttttgggtttagtattttccagagggataaatt 211  Q
    |||||||||||||| ||||||||||||||||||||||||   |||| ||||||||||||||||| ||||||||||| ||||||||||| |||| |||| |    
T  32604788 gtcccaacctttgcctttccctttgtcactttctctcca---atatttggtgaaacctttcttttctttttgggttgagtattttccacagggctaaagt 32604692  T
Q  212 ggtcaccaatatcaaattcactatcatcagagtcaattatttcttgtggcacatttgtagtagtatttttgccattaaattcaaatggcacac 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||    
T  32604691 ggtcaccaatatcaaattcactatcatcagagtcaattatttcttgtggcacatttgtagtagtatttttgccattagattctaatggcacac 32604599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 191; Significance: 1e-103; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 12 - 304
Target Start/End: Original strand, 21022890 - 21023179
Alignment:
Q  12 atggacatcagaggtgaccgcaatttgagcattttcaacttcattatgaccttcagatgcttcagttaactgctcaaatgtgtttctcatagttgttgtc 111  Q
    |||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||  ||||| |  |||| |||||||||| |||||||||||||||||     
T  21022890 atggacatgagaggtggccgcaatttgagccttttcaacttcattatgaccttcaactgcttaaactaaccgctcaaatgtttttctcatagttgttgtt 21022989  T
Q  112 gtcccaacctttgcatttccctttgtcactttctctccattaatatctggtgaaacctttctttactttttgggtttagtattttccagagggataaatt 211  Q
    |||||||||||||| ||||||||||||||||||||||||   |||| ||||||||||||||||| ||||||||||| ||||| ||||| |||| |||| |    
T  21022990 gtcccaacctttgcctttccctttgtcactttctctcca---atatttggtgaaacctttcttttctttttgggttgagtatattccatagggctaaagt 21023086  T
Q  212 ggtcaccaatatcaaattcactatcatcagagtcaattatttcttgtggcacatttgtagtagtatttttgccattaaattcaaatggcacac 304  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||    
T  21023087 ggtcaccaatattaaattcactatcatcagagtcaattatttcttgtggcacatttgtagtagtatttttgccattagattctaatggcacac 21023179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 46 - 180
Target Start/End: Complemental strand, 7230879 - 7230748
Alignment:
Q  46 tcaacttcattatgaccttcagatgcttcagttaactgctcaaatgtgtttctcatagttgttgtcgtcccaacctttgcatttccctttgtcactttct 145  Q
    |||| ||||||||||| ||| ||||||| |  |||  |||||||||||||||||||||||||||  ||||||||||| |  || |||||||| |||||||    
T  7230879 tcaatttcattatgacattctgatgcttgaactaatcgctcaaatgtgtttctcatagttgttgcagtcccaaccttggtcttaccctttgtaactttct 7230780  T
Q  146 ctccattaatatctggtgaaacctttctttacttt 180  Q
    | ||    |||||||||||||||||||||| ||||    
T  7230779 cacc---catatctggtgaaacctttcttttcttt 7230748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 46 - 180
Target Start/End: Complemental strand, 7230553 - 7230422
Alignment:
Q  46 tcaacttcattatgaccttcagatgcttcagttaactgctcaaatgtgtttctcatagttgttgtcgtcccaacctttgcatttccctttgtcactttct 145  Q
    |||| ||||||||||| ||| ||||||| |  |||  |||||||||||||||||||||||||||  ||||||||||| |  || |||||||| |||||||    
T  7230553 tcaatttcattatgacattctgatgcttgaactaatcgctcaaatgtgtttctcatagttgttgcagtcccaaccttggtcttaccctttgtaactttct 7230454  T
Q  146 ctccattaatatctggtgaaacctttctttacttt 180  Q
    | ||    |||||||||||||||||| ||| ||||    
T  7230453 cacc---catatctggtgaaaccttttttttcttt 7230422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 183; Significance: 6e-99; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 12 - 304
Target Start/End: Complemental strand, 24956785 - 24956496
Alignment:
Q  12 atggacatcagaggtgaccgcaatttgagcattttcaacttcattatgaccttcagatgcttcagttaactgctcaaatgtgtttctcatagttgttgtc 111  Q
    |||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||  |||| |||||||||| ||||||||| ||||||      
T  24956785 atggacatgagaggtggccgcaatttgagccttttcaacttcattatgaccttcagctgcttcaactaaccgctcaaatgtttttctcataattgttgaa 24956686  T
Q  112 gtcccaacctttgcatttccctttgtcactttctctccattaatatctggtgaaacctttctttactttttgggtttagtattttccagagggataaatt 211  Q
    |||||||||||||| |||||||||||||||||| |||||   |||| ||||||||||||||||| ||||||||||| ||||||||||| |||| |||| |    
T  24956685 gtcccaacctttgcctttccctttgtcactttcactcca---atatatggtgaaacctttcttttctttttgggttgagtattttccacagggctaaagt 24956589  T
Q  212 ggtcaccaatatcaaattcactatcatcagagtcaattatttcttgtggcacatttgtagtagtatttttgccattaaattcaaatggcacac 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || || |||||||||| ||||    
T  24956588 ggtcaccaatatcaaattcactatcatcagagtcaattatttcttgtggcacatctgtagtagtatttttgtcactagattcaaatggtacac 24956496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 12 - 304
Target Start/End: Original strand, 18176326 - 18176615
Alignment:
Q  12 atggacatcagaggtgaccgcaatttgagcattttcaacttcattatgaccttcagatgcttcagttaactgctcaaatgtgtttctcatagttgttgtc 111  Q
    |||||||| ||||||| | ||||||||||| ||||||||||||||||||||||| | |||||||  |||| ||||||||||  ||||||||||||||||     
T  18176326 atggacatgagaggtggctgcaatttgagccttttcaacttcattatgaccttcggctgcttcaactaaccgctcaaatgttcttctcatagttgttgtt 18176425  T
Q  112 gtcccaacctttgcatttccctttgtcactttctctccattaatatctggtgaaacctttctttactttttgggtttagtattttccagagggataaatt 211  Q
    |||||||||||||| ||||||||||||||||||||||||   ||| |||||||||| ||||||| ||||||||||| ||||||||||| |||| |||| |    
T  18176426 gtcccaacctttgcctttccctttgtcactttctctcca---atagctggtgaaacttttcttttctttttgggttgagtattttccatagggctaaagt 18176522  T
Q  212 ggtcaccaatatcaaattcactatcatcagagtcaattatttcttgtggcacatttgtagtagtatttttgccattaaattcaaatggcacac 304  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| || | |||||||||||||    
T  18176523 ggtcaccaatatcaaattcactatcatcggagtcaattatttcttgtggcacatctgtagtagtatttttgccactacaatcaaatggcacac 18176615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 83 - 180
Target Start/End: Complemental strand, 29564634 - 29564540
Alignment:
Q  83 gctcaaatgtgtttctcatagttgttgtcgtcccaacctttgcatttccctttgtcactttctctccattaatatctggtgaaacctttctttacttt 180  Q
    ||||||||||||||||||| |||||||  |||||||||||    || |||||||| |||||||| ||    |||||||||||||||||||||| ||||    
T  29564634 gctcaaatgtgtttctcattgttgttgcagtcccaaccttgttcttaccctttgtaactttctcacc---catatctggtgaaacctttcttttcttt 29564540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 54 - 180
Target Start/End: Original strand, 175922 - 176045
Alignment:
Q  54 attatgaccttcagatgcttcagttaactgctcaaatgtgtttctcatagttgttgtcgtcccaacctttgcatttccctttgtcactttctctccatta 153  Q
    |||||||||||| | ||||| |  |||  |||||||||||||||||||||||||||  ||||||||||| |  || |||||||| |||||||| ||        
T  175922 attatgaccttctgctgcttgaactaatcgctcaaatgtgtttctcatagttgttgcagtcccaaccttggtcttaccctttgtaactttctcacc---c 176018  T
Q  154 atatctggtgaaacctttctttacttt 180  Q
    |||||||||||||||||||||| ||||    
T  176019 atatctggtgaaacctttcttttcttt 176045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 54 - 180
Target Start/End: Complemental strand, 14641370 - 14641247
Alignment:
Q  54 attatgaccttcagatgcttcagttaactgctcaaatgtgtttctcatagttgttgtcgtcccaacctttgcatttccctttgtcactttctctccatta 153  Q
    |||||||||||| | ||||| |  |||  |||||||||||||||||||||||||||  ||||||||||| |  || |||||||| |||||||| ||        
T  14641370 attatgaccttctgctgcttgaactaatcgctcaaatgtgtttctcatagttgttgcagtcccaaccttggtcttaccctttgtaactttctcacc---c 14641274  T
Q  154 atatctggtgaaacctttctttacttt 180  Q
    |||||||||||||||||||||| ||||    
T  14641273 atatctggtgaaacctttcttttcttt 14641247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 46 - 180
Target Start/End: Complemental strand, 26110822 - 26110691
Alignment:
Q  46 tcaacttcattatgaccttcagatgcttcagttaactgctcaaatgtgtttctcatagttgttgtcgtcccaacctttgcatttccctttgtcactttct 145  Q
    |||| ||||||||||||||| | ||||| |  |||  ||||||||||||||||||| |||||||  |||||||||||    || |||||||| |||||||    
T  26110822 tcaatttcattatgaccttctgctgcttgaactaatcgctcaaatgtgtttctcatcgttgttgcagtcccaaccttgatcttaccctttgtaactttct 26110723  T
Q  146 ctccattaatatctggtgaaacctttctttacttt 180  Q
    | ||    |||||||||||||||||||||| ||||    
T  26110722 cacc---catatctggtgaaacctttcttttcttt 26110691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 83 - 180
Target Start/End: Complemental strand, 131274 - 131180
Alignment:
Q  83 gctcaaatgtgtttctcatagttgttgtcgtcccaacctttgcatttccctttgtcactttctctccattaatatctggtgaaacctttctttacttt 180  Q
    |||||||||||||||||||||||||||  ||||||||||| |  || | |||||| |||||||| ||    |||||||||||||||||||||| ||||    
T  131274 gctcaaatgtgtttctcatagttgttgcagtcccaaccttggtcttacactttgtaactttctcacc---catatctggtgaaacctttcttttcttt 131180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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