View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7167_high_2 (Length: 426)

Name: NF7167_high_2
Description: NF7167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7167_high_2
NF7167_high_2
[»] chr1 (13 HSPs)
chr1 (10-415)||(24538279-24538674)
chr1 (10-406)||(25682430-25682838)
chr1 (10-406)||(4394938-4395345)
chr1 (10-415)||(36733463-36733883)
chr1 (10-415)||(51113085-51113502)
chr1 (10-378)||(48949724-48950105)
chr1 (11-280)||(44527157-44527439)
chr1 (62-272)||(48166149-48166372)
chr1 (10-343)||(5609180-5609526)
chr1 (166-239)||(52109399-52109472)
chr1 (10-149)||(44602800-44602939)
chr1 (63-306)||(16816853-16817108)
chr1 (285-340)||(17507302-17507357)
[»] chr7 (15 HSPs)
chr7 (10-415)||(16731703-16732120)
chr7 (10-415)||(17709837-17710254)
chr7 (61-415)||(9328653-9329018)
chr7 (10-415)||(22289011-22289428)
chr7 (10-415)||(29200955-29201366)
chr7 (166-406)||(1581394-1581633)
chr7 (308-405)||(11745952-11746048)
chr7 (183-289)||(16098385-16098491)
chr7 (10-252)||(30493610-30493864)
chr7 (150-342)||(17877250-17877442)
chr7 (10-110)||(3601739-3601839)
chr7 (156-239)||(34578437-34578520)
chr7 (325-406)||(16098262-16098342)
chr7 (11-149)||(16098538-16098676)
chr7 (69-149)||(1581664-1581744)
[»] chr4 (19 HSPs)
chr4 (10-415)||(29655666-29656082)
chr4 (10-415)||(49951083-49951500)
chr4 (10-392)||(51734972-51735366)
chr4 (10-415)||(28537787-28538202)
chr4 (10-415)||(2064623-2065040)
chr4 (10-415)||(32577048-32577463)
chr4 (10-404)||(37245852-37246262)
chr4 (10-403)||(18442147-18442549)
chr4 (150-415)||(51259683-51259947)
chr4 (10-406)||(43840306-43840715)
chr4 (10-415)||(55734779-55735196)
chr4 (10-415)||(49119400-49119804)
chr4 (68-415)||(56065399-56065758)
chr4 (31-415)||(21321297-21321695)
chr4 (10-415)||(28425965-28426370)
chr4 (10-149)||(26422602-26422741)
chr4 (150-312)||(41835464-41835626)
chr4 (10-149)||(47226330-47226469)
chr4 (10-149)||(51259529-51259668)
[»] chr6 (11 HSPs)
chr6 (10-406)||(28106918-28107326)
chr6 (150-415)||(14679929-14680196)
chr6 (10-415)||(15605994-15606418)
chr6 (10-145)||(19690879-19691014)
chr6 (11-239)||(29368057-29368296)
chr6 (292-415)||(30802265-30802387)
chr6 (186-252)||(15053364-15053430)
chr6 (301-415)||(19364249-19364362)
chr6 (150-204)||(11731819-11731873)
chr6 (155-205)||(30802149-30802199)
chr6 (367-415)||(29368406-29368453)
[»] chr5 (20 HSPs)
chr5 (10-415)||(20204725-20205142)
chr5 (61-414)||(22767308-22767673)
chr5 (155-406)||(30222957-30223207)
chr5 (10-406)||(27532906-27533315)
chr5 (183-415)||(41940923-41941154)
chr5 (10-406)||(8387865-8388273)
chr5 (10-289)||(12660211-12660503)
chr5 (150-409)||(15988902-15989160)
chr5 (10-304)||(25730688-25730995)
chr5 (11-252)||(4268031-4268285)
chr5 (10-239)||(34652254-34652495)
chr5 (10-315)||(26597457-26597775)
chr5 (11-406)||(27292225-27292620)
chr5 (269-414)||(34653864-34654007)
chr5 (153-229)||(37448080-37448156)
chr5 (5-149)||(41940732-41940875)
chr5 (325-415)||(4267881-4267970)
chr5 (150-280)||(11375666-11375796)
chr5 (111-149)||(37448173-37448211)
chr5 (261-406)||(16074515-16074659)
[»] chr2 (12 HSPs)
chr2 (10-406)||(88338-88746)
chr2 (10-403)||(12130638-12131043)
chr2 (13-337)||(34695907-34696242)
chr2 (13-337)||(34718319-34718654)
chr2 (20-149)||(14827128-14827257)
chr2 (61-341)||(44017369-44017662)
chr2 (10-147)||(13109869-13110006)
chr2 (8-133)||(22845600-22845725)
chr2 (154-391)||(18345643-18345867)
chr2 (10-131)||(1417981-1418102)
chr2 (150-239)||(26198638-26198727)
chr2 (5-98)||(26198781-26198874)
[»] chr3 (14 HSPs)
chr3 (10-404)||(42340277-42340682)
chr3 (156-389)||(46007097-46007330)
chr3 (10-378)||(55199317-55199698)
chr3 (11-280)||(53496936-53497218)
chr3 (31-149)||(647184-647302)
chr3 (150-294)||(2615383-2615527)
chr3 (183-278)||(48227319-48227414)
chr3 (104-271)||(647305-647485)
chr3 (10-145)||(24176820-24176957)
chr3 (62-149)||(2121129-2121216)
chr3 (150-253)||(27941147-27941250)
chr3 (10-149)||(11020180-11020319)
chr3 (344-415)||(27747787-27747857)
chr3 (186-239)||(36310729-36310782)
[»] chr8 (11 HSPs)
chr8 (61-406)||(478107-478464)
chr8 (68-406)||(8451181-8451531)
chr8 (10-404)||(7127004-7127410)
chr8 (11-403)||(23853726-23854118)
chr8 (261-406)||(40588979-40589123)
chr8 (150-294)||(13414913-13415057)
chr8 (10-149)||(185591-185730)
chr8 (10-236)||(37712027-37712260)
chr8 (150-205)||(40588883-40588938)
chr8 (10-145)||(3606739-3606874)
chr8 (68-149)||(13415071-13415152)
[»] scaffold0446 (1 HSPs)
scaffold0446 (68-342)||(28-315)
[»] scaffold0922 (1 HSPs)
scaffold0922 (10-131)||(264-385)


Alignment Details
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 10 - 415
Target Start/End: Complemental strand, 24538674 - 24538279
Alignment:
Q  10 ataatactcgaaataatagcgtagaattctaaatcactatgacccaaagaagatagatcttgcactagagtagaagagtcagactcgaaaagaactcgat 109  Q
    |||||||| ||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |    
T  24538674 ataatactagaaataatagcgtagaattctgaatcactatgacccgaagcagatagatcttgcactagagtagaagagtcagactcgaaaagaactcggt 24538575  T
Q  110 cccatcagttcacatcagcaaagtgaatggcatcgagtaacccttcaaaactgtcgtatttgcctgctgccaattcgtttgagcccgaataaattgtcca 209  Q
    ||||||||          |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  24538574 cccatcag----------caaagtgaatggcatcgagtaaccctccaaaactgtcgtatttgcctgctgccaattcgtttgagcccgaataaattatcca 24538485  T
Q  210 cgggagtctctaacacaacacacaaaagatctaacttggttacggttatacaacgcggcatccacattgcatttcgaccaggtctcacttggtttctctc 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  24538484 cgggagtctctaacacaacacacaaaagatctaacttggttacggttatagaacgcggcatccacattgcatttcgaccaggtctcacttggtttctctc 24538385  T
Q  310 aaactgagatattaccttgcactctattctgcctattttgcacaactggtggtgagggatgtttatgaaacctcttgccattgttgtcatgcatctaatg 409  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24538384 aaactgagatgttaccttgcactctattctgcctatgttgcacaactggtggtgagggatgtttatgaaacctcttgccattgttgtcatgcatctaatg 24538285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 10 - 406
Target Start/End: Complemental strand, 25682838 - 25682430
Alignment:
Q  10 ataatactcgaaataatagcgtagaattctaaatcactatgacccaaagaagatagatcttgcactagagtagaagagtcagactcgaaaagaactcgat 109  Q
    |||||||| |||| |||||  ||||||||||||||||| || |||  ||| |||||| |||| ||||||||||  |||||| ||||||| | | | || |    
T  25682838 ataatactagaaacaatagtatagaattctaaatcactgtggcccggagacgatagagcttgtactagagtagctgagtcaaactcgaagacagcccggt 25682739  T
Q  110 cccatcagttcacatcagcaaagtgaatggcatcgagtaa-------------cccttcaaaactgtcgtatttgcctgctgccaattcgtttgagcccg 196  Q
    |||||| |||||||| ||||||||||||| ||||||||||             |||| ||| |||||| |||||||| | ||||| |||||||||||||     
T  25682738 cccatctgttcacattagcaaagtgaatgacatcgagtaaggctactgcctccccctccaacactgtcatatttgcccgttgccatttcgtttgagccca 25682639  T
Q  197 aataaattgtccacgggagtctctaacacaacacacaaaagatctaacttggttacggttatacaacgcggcatccacattgcatttcgaccaggtctca 296  Q
     |||||||| |||||||||||||||||||||||| |||||||| |||  |||||||| | ||  ||| |||||||||||||||| ||| |||| ||||||    
T  25682638 gataaattgcccacgggagtctctaacacaacacgcaaaagatgtaagatggttacgttcatgaaacacggcatccacattgcacttcaaccatgtctca 25682539  T
Q  297 cttggtttctctcaaactgagatattaccttgcactctattctgcctattttgcacaactggtggtgagggatgtttatgaaacctcttgccattgttgt 396  Q
    |  |||||||| |||| |||| | || |||||||||||||||| || || ||||||||  || | | |||| |||||||| || |||||||||||| ||     
T  25682538 cacggtttctcccaaattgagttcttgccttgcactctattctacccatgttgcacaatcggcgataagggttgtttatg-aatctcttgccattgctgc 25682440  T
Q  397 catgcatcta 406  Q
    ||||||||||    
T  25682439 catgcatcta 25682430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 10 - 406
Target Start/End: Complemental strand, 4395345 - 4394938
Alignment:
Q  10 ataatactcgaaataatagcgtagaattctaaatcactatgacccaaagaagatagatcttgcactagagtagaagagtcagactcgaaaagaactcgat 109  Q
    ||||||||  ||| |||||  ||||||||| |||||| ||||||   ||| |||||| |||||||||||||||| ||||  |||||||| | |||  | |    
T  4395345 ataatactataaacaataggatagaattctgaatcaccatgaccttgagacgatagagcttgcactagagtagatgagttggactcgaagataacctggt 4395246  T
Q  110 cccatcagttcacatcagcaaagtgaatggcatcgagtaa------------cccttcaaaactgtcgtatttgcctgctgccaattcgtttgagcccga 197  Q
    ||||||  ||| ||||||||||||||| ||| ||||||||            |||||||||||| || |||||||| ||||||| |||| |||||||||     
T  4395245 cccatctattcgcatcagcaaagtgaagggcctcgagtaaggctagtgcctccccttcaaaactctcatatttgcccgctgccatttcgattgagcccgg 4395146  T
Q  198 ataaattgtccacgggagtctctaacacaacacacaaaagatctaacttggttacggttatacaacgcggcatccacattgcatttcgaccaggtctcac 297  Q
    |||||||| ||||| |||||||||||||| ||  |||||| | | |  |||||||||| ||  |||||||| ||||||||||| |||  ||| ||||| |    
T  4395145 ataaattgcccacgagagtctctaacacagcatgcaaaagttgtgatatggttacggtcatggaacgcggcttccacattgcacttcagccacgtctcgc 4395046  T
Q  298 ttggtttctctcaaactgagatattaccttgcactctattctgcctattttgcacaactggtggtgagggatgtttatgaaacctcttgccattgttgtc 397  Q
    | |||||||| ||||||||| | ||  |||||||||| || ||| | | |||||  || ||| | ||||||||||||| |||||||||||||||||||||    
T  4395045 tcggtttctcccaaactgagttgttgtcttgcactctgttatgcatgtgttgcattaccggtagcgagggatgtttat-aaacctcttgccattgttgtc 4394947  T
Q  398 atgcatcta 406  Q
    |||||||||    
T  4394946 atgcatcta 4394938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 10 - 415
Target Start/End: Complemental strand, 36733883 - 36733463
Alignment:
Q  10 ataatactcgaaataatagcgtagaattctaaatcactatgacccaaagaagatagatcttgcactagagtagaagagtcagactcgaaaagaactcgat 109  Q
    |||||||| |||| |||| | ||||||| | |||||  ||| |||  ||| |||| | |||||||||||||   ||||||||||||||| | ||| || |    
T  36733883 ataatactagaaacaataacatagaattatgaatcatcatggcccggagacgatatagcttgcactagagttatagagtcagactcgaagacaacccggt 36733784  T
Q  110 cccatcagttcacatcagcaaagtgaatggcatcgagtaa-------------cccttcaaaactgtcgtatttgcctgctgccaattcgtttgagcccg 196  Q
    |||||  |||||||||||||||||||||  ||| ||||||             |||| |||||||| | ||||| || | || || || |||||||||||    
T  36733783 cccatttgttcacatcagcaaagtgaataacattgagtaagactactgcctccccctccaaaactgccatatttacccgttgtcattttgtttgagcccg 36733684  T
Q  197 aataaattgtccacgggagtctctaacacaacacacaaaagatctaacttggttacggttatacaacgcggcatccac--attgcatttcgaccaggtct 294  Q
    ||||||||||||||| ||||||||||||||||||||||||| | |||  ||||||  || ||  ||||||||||||||  |||||| ||| |||| ||||    
T  36733683 aataaattgtccacgagagtctctaacacaacacacaaaaggtgtaagatggttatagtcatgaaacgcggcatccacatattgcacttcaaccatgtct 36733584  T
Q  295 cacttggtttctctcaaactgagatattaccttgcactctattctgcctattttgcacaactggtggtga-gggatgtttatgaaacctcttgccattgt 393  Q
    | || ||||||||  ||||| || |||||||||||| |||||| || |  | ||||||||| ||| |||| |||||||||||| |||||||||||||||     
T  36733583 cgctcggtttctccgaaactcagttattaccttgcattctattttggccttgttgcacaaccggtagtgaggggatgtttatg-aacctcttgccattgc 36733485  T
Q  394 tgtcatgcatctaatgatgtcc 415  Q
    || |||||||||| || |||||    
T  36733484 tgccatgcatctagtgttgtcc 36733463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 10 - 415
Target Start/End: Complemental strand, 51113502 - 51113085
Alignment:
Q  10 ataatactcgaaataatagcgtagaattctaaatcactatgacccaaagaagatagatcttgcactagagtagaagagtcagactcgaaaagaactcgat 109  Q
    |||||||| |||| |||||| || || ||  |||||| ||| |||| ||| |||||  |||||||||||||||  ||||| |||||||| | ||| || |    
T  51113502 ataatactagaaacaatagcataaaactccgaatcaccatggcccagagacgatagcgcttgcactagagtagctgagtcggactcgaagacaacccggt 51113403  T
Q  110 cccatcagttcacatcagcaaagtgaatggcatcgagtaa-------------cccttcaaaactgtcgtatttgcctgctgccaattcgtttgagcccg 196  Q
    |||||| |||| || || ||||||||||| ||||||||||             |||| |||||| ||  |||||||  | ||||| |||||||||| |||    
T  51113402 cccatctgttcccaacaacaaagtgaatgacatcgagtaaggcaactgcctccccctccaaaacggttatatttgctcgttgccatttcgtttgagtccg 51113303  T
Q  197 aataaattgtccacgggagtctctaacacaacacacaaaagatctaacttggttacggttatacaacgcggcatccacattgcatttcgaccaggtctca 296  Q
    ||| ||||| |||||||||||||||||||||||| | |||||| |||  || | ||||| ||  ||| |||||||||||||||| ||  |||| ||||||    
T  51113302 aatgaattgcccacgggagtctctaacacaacacgcgaaagatgtaatatgttgacggtcatgaaacacggcatccacattgcactttaaccacgtctca 51113203  T
Q  297 cttggtttctctcaaactgagatattaccttgcactctattctgcctattttgcacaactggtggtgagggatgtttatgaaacctcttgccattgttgt 396  Q
    |  | |||||| ||||||||| | ||| ||||||||||||||||||  | ||||||||  | || |||||| |||||||| |||||| |||||||| ||     
T  51113202 cacgatttctcccaaactgagttgttagcttgcactctattctgcccgtgttgcacaatcgatgatgagggctgtttatg-aacctcctgccattgctgc 51113104  T
Q  397 catgcatctaatgatgtcc 415  Q
    |||||||||| || |||||    
T  51113103 catgcatctagtgctgtcc 51113085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 10 - 378
Target Start/End: Original strand, 48949724 - 48950105
Alignment:
Q  10 ataatactcgaaataatagcgtagaattctaaatcactatgacccaaagaagatagatcttgcactagagtagaagagtcagactcgaaaagaactcgat 109  Q
    |||||||| |||| |||||| || |||||  |||||| ||| |||  ||| |||||  |||||||||||||||  ||||   ||||||| | ||| || |    
T  48949724 ataatactagaaacaatagcataaaattccgaatcaccatggcccggagacgatagcgcttgcactagagtagctgagttgaactcgaagacaacccggt 48949823  T
Q  110 cccatcagttcacatcagcaaagtgaatggcatcgagtaa-------------cccttcaaaactgtcgtatttgcctgctgccaattcgtttgagcccg 196  Q
    |||||| |||| || || |||||||||| |||||||||||             |||| ||||||| || |||||||  | ||||| ||||||||||||||    
T  48949824 cccatctgttcccaacaacaaagtgaatcgcatcgagtaaggcaactgcctccccctccaaaactttcatatttgctcgttgccatttcgtttgagcccg 48949923  T
Q  197 aataaattgtccacgggagtctctaacacaacacacaaaagatctaacttggttacggttatacaacgcggcatccacattgcatttcgaccaggtctca 296  Q
    ||| ||||| | |||||||||||||||||||||| | |||||| |||  || | ||||| ||  |||||||||||||||||||| ||| |||| ||||||    
T  48949924 aatgaattgccaacgggagtctctaacacaacacgcgaaagatgtaatatgttgacggtcatgaaacgcggcatccacattgcacttcaaccacgtctca 48950023  T
Q  297 cttggtttctctcaaactgagatattaccttgcactctattctgcctattttgcacaactggtggtgagggatgtttatgaa 378  Q
    |  |||||||| ||| ||||| | ||| ||||||||||||||||||  | ||||||||  | || |||||| ||||||||||    
T  48950024 cgcggtttctcccaatctgagttgttagcttgcactctattctgcccgtgttgcacaatcgatgatgagggttgtttatgaa 48950105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 11 - 280
Target Start/End: Complemental strand, 44527439 - 44527157
Alignment:
Q  11 taatactcgaaataatagcgtagaattctaaatcactatgacccaaagaagatagatcttgcactagagtagaagagtcagactcgaaaagaactcgatc 110  Q
    ||||||| |||| |||||| ||||||||  |||||| ||| |||  ||| |||||| ||||||| |||||||| ||||| |||||||| | ||| || ||    
T  44527439 taatactagaaacaatagcatagaattccgaatcaccatggcccggagatgatagagcttgcacaagagtagatgagtcggactcgaagacaacccggtc 44527340  T
Q  111 ccatcagttcacatcagcaaagtgaatggcatcgagtaa-------------cccttcaaaactgtcgtatttgcctgctgccaattcgtttgagcccga 197  Q
    ||||| |||  ||||||||||||||| ||| || |||||             |||| |||||||||| |||||| | ||||||| || ||||||||||||    
T  44527339 ccatctgttagcatcagcaaagtgaagggcctctagtaaggctactgcctccccctccaaaactgtcatatttgtccgctgccattttgtttgagcccga 44527240  T
Q  198 ataaattgtccacgggagtctctaacacaacacacaaaagatctaacttggttacggttatacaacgcggcatccacattgca 280  Q
    |||||||| ||||  |||||||||||||||||| |||||||| |||  ||||||| || ||  |||||||| |||||||||||    
T  44527239 ataaattgcccacaagagtctctaacacaacacgcaaaagatgtaatatggttacagtcatggaacgcggcgtccacattgca 44527157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 62 - 272
Target Start/End: Complemental strand, 48166372 - 48166149
Alignment:
Q  62 atagatcttgcactagagtagaagagtcagactcgaaaagaactcgatcccatcagttcacatcagcaaagtgaatggcatcgagtaa------------ 149  Q
    ||||| |||||| ||||||||  || ||||||||||| | ||| |||||||||   ||||||| ||||||||||||| ||||||||||                
T  48166372 atagagcttgcaatagagtagctgaatcagactcgaagacaacccgatcccatatattcacataagcaaagtgaatgacatcgagtaaggctattgtctc 48166273  T
Q  150 -cccttcaaaactgtcgtatttgcctgctgccaattcgtttgagcccgaataaattgtccacgggagtctctaacacaacacacaaaagatctaacttgg 248  Q
     | || |||||||||| |||||||  ||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||  |||    
T  48166272 ccactccaaaactgtcatatttgctcgctgccatttcatttgagcccgaataaattgaccacgggagtctctaacacaacacacaaaagatgtaagatgg 48166173  T
Q  249 ttacggttatacaacgcggcatcc 272  Q
    ||||||| ||  |||| |||||||    
T  48166172 ttacggtcatggaacgtggcatcc 48166149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 10 - 343
Target Start/End: Complemental strand, 5609526 - 5609180
Alignment:
Q  10 ataatactcgaaataatagcgtagaattctaaatcactatgacccaaagaagatagatcttgcactagagtagaagagtcagactcgaaaagaactcgat 109  Q
    |||||||| |||| |||||| ||||||||| |||||| |||||||  ||| ||||||  ||||||||||||||| |||||  ||||||| | ||| ||||    
T  5609526 ataatactagaaacaatagcatagaattctgaatcaccatgaccctgagacgatagagtttgcactagagtagatgagtcgaactcgaagacaacccgat 5609427  T
Q  110 cccatcagttcacatcagcaaagtgaatggcatcgagtaa-------------cccttcaaaactgtcgtatttgcctgctgccaattcgtttgagcccg 196  Q
    | |||| |||| || || ||||||||| | | ||||||||             |||||||||||| || |||||| | |||| ||    |||||||||||    
T  5609426 ctcatctgttcgcaacatcaaagtgaaggacctcgagtaaggctactgcctcccccttcaaaactatcatatttgtccgctgtcatagagtttgagcccg 5609327  T
Q  197 aataaattgtccacgggagtctctaacacaacacacaaaagatctaacttggttacggttatacaacgcggcatccacattgcatttcgaccaggtctca 296  Q
    |||||||||  |  | ||||||||| |||| ||| | |||| | |||  ||||||| || ||  |||||| ||||||||||||| ||| |||| |||||     
T  5609326 aataaattgctcgtgtgagtctctagcacagcacgcgaaagttgtaatatggttacagtcatggaacgcgacatccacattgcacttcaaccacgtctcg 5609227  T
Q  297 cttggtttctctcaaactgagatattaccttgcactctattctgcct 343  Q
    || |||||||| ||||||||| | || |||||||||||||| |||||    
T  5609226 ctcggtttctcccaaactgagttgttgccttgcactctattatgcct 5609180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 166 - 239
Target Start/End: Complemental strand, 52109472 - 52109399
Alignment:
Q  166 tatttgcctgctgccaattcgtttgagcccgaataaattgtccacgggagtctctaacacaacacacaaaagat 239  Q
    |||||||| ||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||  ||||||||    
T  52109472 tatttgcccgctgccatttcgtttgagcctgaataaattgtccacaggagtctctaacacaacatgcaaaagat 52109399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 10 - 149
Target Start/End: Complemental strand, 44602939 - 44602800
Alignment:
Q  10 ataatactcgaaataatagcgtagaattctaaatcactatgacccaaagaagatagatcttgcactagagtagaagagtcagactcgaaaagaactcgat 109  Q
    |||||||| |||| |||||| ||||||| | |||||| ||| |||  ||| |||||| |||||||||||||||  |||| |||||||||   ||| || |    
T  44602939 ataatactagaaacaatagcatagaattttgaatcaccatggcccggagatgatagagcttgcactagagtagcggagttagactcgaaggcaacccggt 44602840  T
Q  110 cccatcagttcacatcagcaaagtgaatggcatcgagtaa 149  Q
    | |||| ||||||||||| |||||||||| ||||||||||    
T  44602839 ctcatctgttcacatcagtaaagtgaatgacatcgagtaa 44602800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 63 - 306
Target Start/End: Original strand, 16816853 - 16817108
Alignment:
Q  63 tagatcttgcactagagtagaagagtcagactcgaaaagaactcgatcccatcagttcacatcagcaaagtgaatggcatcgagtaa------------c 150  Q
    |||| |||| ||||||||||| ||||| |||||||| | ||| || ||||||| |||  |||||||||| |||| ||| ||||||||            |    
T  16816853 tagaacttgaactagagtagacgagtcggactcgaagacaacccggtcccatctgtttgcatcagcaaaatgaagggcctcgagtaaggctactgcctcc 16816952  T
Q  151 ccttcaaaactgtcgtatttgcctgctgccaattcgtttgagcccgaataaattgtccacgggagtctctaacacaacacacaaaagatctaacttggtt 250  Q
    ||| ||||| |||| ||||||||  |||||| || | |||||| |||||||||||  | || |||||||||| |||| ||||||||||| |||  |||||    
T  16816953 cctccaaaattgtcatatttgcccactgccattttgattgagctcgaataaattgcacgcgagagtctctaaaacaatacacaaaagatgtaatatggtt 16817052  T
Q  251 acggttatacaacgcggcatccacattgcatttcgaccaggtctcacttggtttct 306  Q
    || |  ||  |||||||| ||| ||||||| ||| ||||  ||||||| |||||||    
T  16817053 acagacatggaacgcggcgtccgcattgcacttcaaccacatctcactcggtttct 16817108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 285 - 340
Target Start/End: Complemental strand, 17507357 - 17507302
Alignment:
Q  285 gaccaggtctcacttggtttctctcaaactgagatattaccttgcactctattctg 340  Q
    ||||| ||||| || |||||||| |||||||||||||||||||||||||| |||||    
T  17507357 gaccatgtctcgctcggtttctcccaaactgagatattaccttgcactctcttctg 17507302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 135; Significance: 3e-70; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 10 - 415
Target Start/End: Complemental strand, 16732120 - 16731703
Alignment:
Q  10 ataatactcgaaataatagcgtagaattctaaatcactatgacccaaagaagatagatcttgcactagagtagaagagtcagactcgaaaagaactcgat 109  Q
    |||||||| |||| ||||||  |||||||| |||||| ||| |||  ||| |||||| |||||||||||||||| ||||| |||||||| | |||||| |    
T  16732120 ataatactagaaacaatagcagagaattctgaatcaccatggcccggagatgatagagcttgcactagagtagacgagtcggactcgaagacaactcggt 16732021  T
Q  110 cccatcagttcacatcagcaaagtgaatggcatcgagtaa-------------cccttcaaaactgtcgtatttgcctgctgccaattcgtttgagcccg 196  Q
     ||||| |||| |||||||| |||||||||| ||||||||             |||| ||| |||||| ||||||||  |||||| ||||||||||||||    
T  16732020 tccatctgttcgcatcagcagagtgaatggcctcgagtaaggctactgcctccccctccaatactgtcatatttgccctctgccatttcgtttgagcccg 16731921  T
Q  197 aataaattgtccacgggagtctctaacacaacacacaaaagatctaacttggttacggttatacaacgcggcatccacattgcatttcgaccaggtctca 296  Q
    ||||||||| || ||||| ||||||||||||||  |||||||| |||  ||||| |||| ||  ||| |||||||||||||||| ||| |||| |||||     
T  16731920 aataaattgcccgcgggaatctctaacacaacatgcaaaagatgtaatatggttgcggtcatggaacacggcatccacattgcacttcaaccatgtctcg 16731821  T
Q  297 cttggtttctctcaaactgagatattaccttgcactctattctgcctattttgcacaactggtggtgagggatgtttatgaaacctcttgccattgttgt 396  Q
    || |||||||| ||||||||| | ||||||||||||||||| ||| | | ||||||||||||||||||| | |||||||| ||||||||||||||||||     
T  16731820 ctcggtttctcccaaactgagttgttaccttgcactctattatgcatgtgttgcacaactggtggtgagtgttgtttatg-aacctcttgccattgttgc 16731722  T
Q  397 catgcatctaatgatgtcc 415  Q
    ||||| |||| || |||||    
T  16731721 catgcttctagtgttgtcc 16731703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 10 - 415
Target Start/End: Complemental strand, 17710254 - 17709837
Alignment:
Q  10 ataatactcgaaataatagcgtagaattctaaatcactatgacccaaagaagatagatcttgcactagagtagaagagtcagactcgaaaagaactcgat 109  Q
    |||||||| |||| ||||||  |||||||| |||||| ||| |||  ||| |||||| |||||||||||||||| ||||| |||||||| | |||||| |    
T  17710254 ataatactagaaacaatagcagagaattctgaatcaccatggcccggagatgatagagcttgcactagagtagacgagtcggactcgaagacaactcggt 17710155  T
Q  110 cccatcagttcacatcagcaaagtgaatggcatcgagtaa-------------cccttcaaaactgtcgtatttgcctgctgccaattcgtttgagcccg 196  Q
     ||||| |||| |||||||| |||||||||| ||||||||             |||| ||| |||||| ||||||||  |||||| ||||||||||||||    
T  17710154 tccatctgttcgcatcagcagagtgaatggcctcgagtaaggctactgcctccccctccaatactgtcatatttgccctctgccatttcgtttgagcccg 17710055  T
Q  197 aataaattgtccacgggagtctctaacacaacacacaaaagatctaacttggttacggttatacaacgcggcatccacattgcatttcgaccaggtctca 296  Q
    ||||||||| || ||||| ||||||||||||||  |||||||| |||  ||||| |||| ||  ||| |||||||||||||||| ||| |||| |||||     
T  17710054 aataaattgcccgcgggaatctctaacacaacatgcaaaagatgtaatatggttgcggtcatggaacacggcatccacattgcacttcaaccatgtctcg 17709955  T
Q  297 cttggtttctctcaaactgagatattaccttgcactctattctgcctattttgcacaactggtggtgagggatgtttatgaaacctcttgccattgttgt 396  Q
    || |||||||| ||||||||| | ||||||||||||||||| ||| | | ||||||||||||||||||| | |||||||| ||||||||||||||||||     
T  17709954 ctcggtttctcccaaactgagttgttaccttgcactctattatgcatgtgttgcacaactggtggtgagtgttgtttatg-aacctcttgccattgttgc 17709856  T
Q  397 catgcatctaatgatgtcc 415  Q
    ||||| |||| || |||||    
T  17709855 catgcttctagtgttgtcc 17709837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 61 - 415
Target Start/End: Original strand, 9328653 - 9329018
Alignment:
Q  61 gatagatcttgcactagagtagaagagtcagactcgaaaagaactcgatcccatcagttcacatcagcaaagtgaatggcatcgagtaa----------- 149  Q
    |||||| ||||||||||||||  |||||||||||| || | ||| || ||||||| ||| ||||||||||||||||| ||| |||||||               
T  9328653 gatagagcttgcactagagtatcagagtcagactccaagacaacccggtcccatctgtttacatcagcaaagtgaatagcagcgagtaaggctactgcct 9328752  T
Q  150 --cccttcaaaactgtcgtatttgcctgctgccaattcgtttgagcccgaataaattgtccacgggagtctctaacacaacacacaaaagatctaacttg 247  Q
      |||| |||||| ||| ||||| || | ||||| ||||||||||| |||||||||||||| ||||| ||||||||||||||| |||| ||| |||  ||    
T  9328753 ccccctccaaaacagtcatattttcccgttgccatttcgtttgagctcgaataaattgtcc-cgggaatctctaacacaacacgcaaatgatgtaagatg 9328851  T
Q  248 gttacggttatacaacgcggcatccacattgcatttcgaccaggtctcacttggtttctctcaaactgagatattaccttgcactctattctgcctattt 347  Q
    |||||||| ||  ||||||||||||||||| || ||| |||| ||||| || |||||||| ||||||||| | |||||||||||||||||||  |  | |    
T  9328852 gttacggtcatggaacgcggcatccacattacacttcaaccatgtctcgctcggtttctcccaaactgagttgttaccttgcactctattctagccgtgt 9328951  T
Q  348 tgcacaactggtggtgagggatgtttatgaaacctcttgccattgttgtcatgcatctaatgatgtcc 415  Q
     |||||||  || |||| ||||||||||| ||| ||||||||||| || ||||||||||||| |||||    
T  9328952 ggcacaaccagtagtgatggatgtttatg-aacatcttgccattgctgccatgcatctaatgttgtcc 9329018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 10 - 415
Target Start/End: Complemental strand, 22289428 - 22289011
Alignment:
Q  10 ataatactcgaaataatagcgtagaattctaaatcactatgacccaaagaagatagatcttgcactagagtagaagagtcagactcgaaaagaactcgat 109  Q
    |||||||| |||| |||||| || |||||| |||||| ||| |||  ||| |||||  |||||||||||||||  ||||| |||||||| | | | || |    
T  22289428 ataatactagaaacaatagcataaaattctgaatcaccatggcccggagacgatagcgcttgcactagagtagctgagtcggactcgaagacagcccggt 22289329  T
Q  110 cccatcagttcacatcagcaaagtgaatggcatcgagtaa-------------cccttcaaaactgtcgtatttgcctgctgccaattcgtttgagcccg 196  Q
    |||||  |||| || | |||||||||||||||||||||||             |||| |||||||||| |||||||  | ||||| ||||| |||| |||    
T  22289328 cccatttgttcccaacggcaaagtgaatggcatcgagtaaggcaaccacctccccctccaaaactgtcatatttgctcgttgccatttcgtctgagtccg 22289229  T
Q  197 aataaattgtccacgggagtctctaacacaacacacaaaagatctaacttggttacggttatacaacgcggcatccacattgcatttcgaccaggtctca 296  Q
    ||| ||||| |||||||| ||||||||||||||| | |||||| |||  || | ||||| ||  |||||||||||||||||||| ||  |||| ||||||    
T  22289228 aatgaattgcccacgggaatctctaacacaacacgcgaaagatgtaatatgttgacggtcatgaaacgcggcatccacattgcacttaaaccacgtctca 22289129  T
Q  297 cttggtttctctcaaactgagatattaccttgcactctattctgcctattttgcacaactggtggtgagggatgtttatgaaacctcttgccattgttgt 396  Q
    |  || ||||| ||||||||| | ||| ||||||||||||||||||  | ||||||||| | || |||||| |||||||| |||||| || ||||| ||     
T  22289128 cgcggcttctcccaaactgagttgttagcttgcactctattctgcccgtgttgcacaaccgatgatgagggttgtttatg-aacctcctgtcattgctgc 22289030  T
Q  397 catgcatctaatgatgtcc 415  Q
    |||||||||| || |||||    
T  22289029 catgcatctagtgttgtcc 22289011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 10 - 415
Target Start/End: Original strand, 29200955 - 29201366
Alignment:
Q  10 ataatactcgaaataatagcgtagaattctaaatcactatgacccaaagaagatagatcttgcactagagtagaagagtcagactcgaaaagaactcgat 109  Q
    |||||||| |||| |||||| ||||||||| |||||| ||| |||| ||| |||||| |||||||||||||||  |||||||||||||| | ||| || |    
T  29200955 ataatactagaaacaatagcatagaattctgaatcaccatggcccagagacgatagagcttgcactagagtagctgagtcagactcgaagacaacccgtt 29201054  T
Q  110 cccatcagttcacatcagcaaagtgaatggcatcgagtaa-------------cccttcaaaactgtcgtatttgcctgctgccaattcgtttgagcccg 196  Q
     ||||| |||||||||||||||||||||| |||| |||||             |||| |||||||||| |||||| | |||| || ||||||||||||||    
T  29201055 tccatctgttcacatcagcaaagtgaatgacatcaagtaaacatgctacctccccctccaaaactgtcatatttgtccgctgtcatttcgtttgagcccg 29201154  T
Q  197 aataaattgtc--cacgggagtctctaacacaacacacaaaagatctaacttggttacggttatacaacgcggcatccacattgcatttcgaccaggtct 294  Q
    |||||| || |  |||  |||||||||| ||||||  |||||||| |||  |||        ||  || |||||||| |||||||| ||| |||| ||||    
T  29201155 aataaactggccacacatgagtctctaatacaacatgcaaaagatataatatgg--------atggaaagcggcatcaacattgcacttcaaccacgtct 29201246  T
Q  295 cacttggtttctctcaaactgagatattaccttgcactctattctgcctattttgcacaactggtggtgagggatgtttatgaaacctcttgccattgtt 394  Q
    |    |||||||| ||||||||| |||||||||||||| |||| || |  | ||||||||| | ||||||||| |||||||| ||||||||| ||||| |    
T  29201247 cgtgcggtttctcccaaactgagctattaccttgcactgtattttgtccgtgttgcacaaccgatggtgagggctgtttatg-aacctcttgtcattgct 29201345  T
Q  395 gtcatgcatctaatgatgtcc 415  Q
    |||||||||||| || |||||    
T  29201346 gtcatgcatctagtgttgtcc 29201366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 166 - 406
Target Start/End: Complemental strand, 1581633 - 1581394
Alignment:
Q  166 tatttgcctgctgccaattcgtttgagcccgaataaattgtccacgggagtctctaacacaacacacaaaagatctaacttggttacggttatacaacgc 265  Q
    ||||||||  |||||| |||||||||||||| ||||| | ||| | |||||||||| |||||||| |||||||| |||  |||||| ||| ||  |||||    
T  1581633 tatttgccctctgccatttcgtttgagcccggataaactatccgctggagtctctagcacaacacgcaaaagatgtaatatggttatggtcatggaacgc 1581534  T
Q  266 ggcatccacattgcatttcgaccaggtctcacttggtttctctcaaactgagatattaccttgcactctattctgcctattttgcacaactggtggtgag 365  Q
     |||||||||||||| ||| ||||  |||| ||  ||||||| ||||||||| | |||| ||||||| || | ||    | ||| ||||| | |||||||    
T  1581533 agcatccacattgcacttcaaccacatctcgctcagtttctcccaaactgagttgttacgttgcactatactttgttcgtgttgtacaaccgatggtgag 1581434  T
Q  366 ggatgtttatgaaacctcttgccattgttgtcatgcatcta 406  Q
    ||||||||||| |||||||||||||||||| || |||||||    
T  1581433 ggatgtttatg-aacctcttgccattgttgccaagcatcta 1581394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 308 - 405
Target Start/End: Original strand, 11745952 - 11746048
Alignment:
Q  308 tcaaactgagatattaccttgcactctattctgcctattttgcacaactggtggtgagggatgtttatgaaacctcttgccattgttgtcatgcatct 405  Q
    |||||||||| | |||| ||||||||||||||| || | ||||||||| ||||||||||| ||||||||  |||| |||||||| |||||||||||||    
T  11745952 tcaaactgagttgttactttgcactctattctgtctgtgttgcacaaccggtggtgagggttgtttatg-cacctgttgccattattgtcatgcatct 11746048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 183 - 289
Target Start/End: Complemental strand, 16098491 - 16098385
Alignment:
Q  183 ttcgtttgagcccgaataaattgtccacgggagtctctaacacaacacacaaaagatctaacttggttacggttatacaacgcggcatccacattgcatt 282  Q
    ||||||||||||||||||||||| | | |||||||||||||||||||| |||||||  |||  |||||||||| ||  ||||  || ||||||||||| |    
T  16098491 ttcgtttgagcccgaataaattgcctatgggagtctctaacacaacacgcaaaagaagtaatatggttacggtcatggaacgatgcgtccacattgcact 16098392  T
Q  283 tcgacca 289  Q
    || ||||    
T  16098391 tcaacca 16098385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 10 - 252
Target Start/End: Original strand, 30493610 - 30493864
Alignment:
Q  10 ataatactcgaaataatagcgtagaattctaaatcactatgacccaaagaagatagatcttgcactagagtagaagagtcagactcgaaaagaactcgat 109  Q
    ||||||||  ||| |||||| || |||||| |||||| ||| ||| |||| |||||| ||||||||||||||   ||||| |||||||| | |||  | |    
T  30493610 ataatactataaacaatagcataaaattctgaatcaccatggcccgaagacgatagagcttgcactagagtaattgagtcggactcgaagacaacctggt 30493709  T
Q  110 cccatcagttcacatcagcaaagtgaatggcatcgagtaa------------cccttcaaaactgtcgtatttgcctgctgccaattcgtttgagcccga 197  Q
    | |||| ||||| |||||| ||||||| | |||| |||||            |||| |||||||||| || ||| ||||||||| |||||||||||| ||    
T  30493710 ctcatctgttcatatcagctaagtgaacgacatcaagtaaggctactgcctcccctccaaaactgtcatacttgtctgctgccatttcgtttgagcctga 30493809  T
Q  198 ataaattgtccacgggagtctctaacacaacacacaaaagatctaacttggttac 252  Q
     ||||||| ||| | || | ||||||||||||| ||||| || ||| ||||||||    
T  30493810 gtaaattgcccatgagaatttctaacacaacacgcaaaatatgtaagttggttac 30493864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 150 - 342
Target Start/End: Complemental strand, 17877442 - 17877250
Alignment:
Q  150 cccttcaaaactgtcgtatttgcctgctgccaattcgtttgagcccgaataaattgtccacgggagtctctaacacaacacacaaaagatctaacttggt 249  Q
    |||| ||| |||||| ||||| || ||||| | ||||||||||| ||||| || |  ||| |||||||| |||| | |||| ||| | || |||  ||||    
T  17877442 ccctccaatactgtcatatttccccgctgcgatttcgtttgagcacgaatgaacttcccatgggagtctataacgccacacgcaacaaatgtaatatggt 17877343  T
Q  250 tacggttatacaacgcggcatccacattgcatttcgaccaggtctcacttggtttctctcaaactgagatattaccttgcactctattctgcc 342  Q
    |||  | ||  |||||| ||||||||||||||||| |||| ||||| || |||||||| |||| |||| | ||||||||||||| ||| ||||    
T  17877342 tacaatcatggaacgcgacatccacattgcatttcaaccacgtctcgctcggtttctcccaaattgagttgttaccttgcactcgattatgcc 17877250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 10 - 110
Target Start/End: Complemental strand, 3601839 - 3601739
Alignment:
Q  10 ataatactcgaaataatagcgtagaattctaaatcactatgacccaaagaagatagatcttgcactagagtagaagagtcagactcgaaaagaactcgat 109  Q
    |||||||| |||| |||||| || |||||| |||||| |||  ||| ||| |||| | |||||||||||||||| ||||| |||||||||| ||| ||||    
T  3601839 ataatactagaaacaatagcataaaattctgaatcaccatggtccagagacgataaagcttgcactagagtagatgagtcggactcgaaaacaacccgat 3601740  T
Q  110 c 110  Q
    |    
T  3601739 c 3601739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 156 - 239
Target Start/End: Original strand, 34578437 - 34578520
Alignment:
Q  156 aaaactgtcgtatttgcctgctgccaattcgtttgagcccgaataaattgtccacgggagtctctaacacaacacacaaaagat 239  Q
    ||||||||| |||||||  | || || ||||| ||||||||||||||||| |||||||| | || |||||||||| ||||||||    
T  34578437 aaaactgtcatatttgctcgttgtcatttcgtctgagcccgaataaattgcccacgggaatttcgaacacaacacgcaaaagat 34578520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 325 - 406
Target Start/End: Complemental strand, 16098342 - 16098262
Alignment:
Q  325 cttgcactctattctgcctattttgcacaactggtggtgagggatgtttatgaaacctcttgccattgttgtcatgcatcta 406  Q
    ||||||||||||| ||||  | ||||||||| ||||||||  |||||||| | ||||||||||||||| || ||||||||||    
T  16098342 cttgcactctattatgcccgtgttgcacaaccggtggtgaatgatgttta-ggaacctcttgccattgatgccatgcatcta 16098262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 149
Target Start/End: Complemental strand, 16098676 - 16098538
Alignment:
Q  11 taatactcgaaataatagcgtagaattctaaatcactatgacccaaagaagatagatcttgcactagagtagaagagtcagactcgaaaagaactcgatc 110  Q
    ||||||| |||| |||| | ||||||||| |||||| ||| |||  ||| ||| || |||| ||||||||||| ||||| |||||||| | ||| || ||    
T  16098676 taatactagaaacaatatcatagaattctgaatcaccatggcccggagacgatggagcttgtactagagtagatgagtcggactcgaagacaacccggtc 16098577  T
Q  111 ccatcagttcacatcagcaaagtgaatggcatcgagtaa 149  Q
    ||||  |||  |||||||||| |||| ||| || |||||    
T  16098576 ccatttgttagcatcagcaaattgaagggcctctagtaa 16098538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 149
Target Start/End: Complemental strand, 1581744 - 1581664
Alignment:
Q  69 ttgcactagagtagaagagtcagactcgaaaagaactcgatcccatcagttcacatcagcaaagtgaatggcatcgagtaa 149  Q
    ||||| ||| ||||| ||||  ||||| || ||||| ||||| |||| |||| ||||||||||||||| ||| ||||||||    
T  1581744 ttgcattagtgtagatgagttggactccaatagaacccgatctcatctgttcgcatcagcaaagtgaagggcctcgagtaa 1581664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 135; Significance: 3e-70; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 10 - 415
Target Start/End: Original strand, 29655666 - 29656082
Alignment:
Q  10 ataatactcgaaataatagcgtagaattctaaatcactatgacccaaagaagatagatcttgcactagagtagaagagtcagactcgaaaagaactcgat 109  Q
    |||||||| |||| |||| | ||||||||| |||||| ||| ||| |||| |||||| |||||||||||||||   ||||||||||||| | ||| || |    
T  29655666 ataatactagaaacaataacatagaattctgaatcaccatggcccgaagatgatagagcttgcactagagtagcgtagtcagactcgaagacaacacggt 29655765  T
Q  110 cccatcagttcacatcagcaaagtgaatggcatcgagtaa-------------cccttcaaaactgtcgtatttgcctgctgccaattcgtttgagcccg 196  Q
     ||||| |||||||||||||||||||||| ||||||||||             |||| |||||| ||| |||||||| ||||||| || |||||||||||    
T  29655766 tccatctgttcacatcagcaaagtgaatgacatcgagtaaggctactgcctctccctccaaaacagtcatatttgcccgctgccattttgtttgagcccg 29655865  T
Q  197 aataaattgtccacgggagtctctaacacaacacacaaaagatctaacttggttacggttatacaacgcggcatccacattgcatttcgaccaggtctca 296  Q
    ||||||||| ||||||||| ||||||||||||| ||||||||| |||   ||||||| | ||  ||||||||||||||||| || ||| |||| ||||||    
T  29655866 aataaattgcccacgggagcctctaacacaaca-acaaaagatgtaagagggttacgatcatggaacgcggcatccacattacacttcaaccatgtctca 29655964  T
Q  297 cttggtttctctcaaactgagatattaccttgcactctattctgcctattttgcacaactggtggtgagggatgtttatgaaacctcttgccattgttgt 396  Q
    || |||||||  |||||||||||||||||||||| |||||| |||| || ||||||| | |||||||| | ||||||||| |||||||| |||||| ||     
T  29655965 ctcggtttcttccaaactgagatattaccttgcattctattatgcccatgttgcacacccggtggtgatgaatgtttatg-aacctctttccattgctgc 29656063  T
Q  397 catgcatctaatgatgtcc 415  Q
    |||||||||| || |||||    
T  29656064 catgcatctagtgttgtcc 29656082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 10 - 415
Target Start/End: Complemental strand, 49951500 - 49951083
Alignment:
Q  10 ataatactcgaaataatagcgtagaattctaaatcactatgacccaaagaagatagatcttgcactagagtagaagagtcagactcgaaaagaactcgat 109  Q
    |||||||| |||| ||||||  |||||||| |||||| | | ||| |||| |||| | |||||||||||||||| ||||| |||||||| | |||||| |    
T  49951500 ataatactagaaacaatagcagagaattctgaatcaccacggcccgaagatgataaagcttgcactagagtagacgagtcggactcgaagacaactcggt 49951401  T
Q  110 cccatcagttcacatcagcaaagtgaatggcatcgagtaa-------------cccttcaaaactgtcgtatttgcctgctgccaattcgtttgagcccg 196  Q
     ||||| |||| ||||||||||||||| ||| ||||||||             |||| ||| |||||| |||||||| ||||||| ||||||||||||||    
T  49951400 tccatctgttcgcatcagcaaagtgaagggcctcgagtaaggctactgcctccccctccaatactgtcatatttgcccgctgccatttcgtttgagcccg 49951301  T
Q  197 aataaattgtccacgggagtctctaacacaacacacaaaagatctaacttggttacggttatacaacgcggcatccacattgcatttcgaccaggtctca 296  Q
    ||||||||| || || || ||||||||||| ||  |||||||| |||  ||||| |||| ||  || ||||||||||||||||| ||| |||| |||||     
T  49951300 aataaattggccgcgagaatctctaacacagcatgcaaaagatgtaatatggttgcggtcatggaatgcggcatccacattgcacttcaaccatgtctcg 49951201  T
Q  297 cttggtttctctcaaactgagatattaccttgcactctattctgcctattttgcacaactggtggtgagggatgtttatgaaacctcttgccattgttgt 396  Q
    || ||||||||  |||||||| | ||||||||||||||||| ||||| | ||||||||||||||||||| | |||||||| ||||||||||||||||||     
T  49951200 ctcggtttctccaaaactgagttgttaccttgcactctattatgcctgtgttgcacaactggtggtgagcgttgtttatg-aacctcttgccattgttgc 49951102  T
Q  397 catgcatctaatgatgtcc 415  Q
    ||||| |||| || |||||    
T  49951101 catgcttctagtgttgtcc 49951083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 10 - 392
Target Start/End: Original strand, 51734972 - 51735366
Alignment:
Q  10 ataatactcgaaataatagcgtagaattctaaatcactatgacccaaagaagatagatcttgcactagagtagaagagtcagactcgaaaagaactcgat 109  Q
    |||||||| |||| |||| | ||||||| | |||||| |||  ||| ||| |||||| |||||||||||||||| ||| | |||||||| | |||||| |    
T  51734972 ataatactagaaacaatatcatagaattatgaatcaccatggtccagagacgatagagcttgcactagagtagaggagcctgactcgaagacaactcg-t 51735070  T
Q  110 cccatcagttcacatcagcaaagtgaatggcatcgagtaa-------------cccttcaaaactgtcgtatttgcctgctgccaattcgtttgagcccg 196  Q
    || |||  ||||||||||||||||||||||||||||||||             |||| |||||||||| |||||||  |||| || ||||||| ||||||    
T  51735071 cctatctattcacatcagcaaagtgaatggcatcgagtaaggctactgcctccccctccaaaactgtcatatttgcacgctgtcatttcgtttaagcccg 51735170  T
Q  197 aataaattgtccacgggagtctctaacacaacacacaaaagatctaacttggttacggttatacaacgcggcatccacattgcatttcgaccaggtctca 296  Q
    ||||||||||| |||| |||||||||||||||||||||||||| |||  |||||||  | ||  |||||||||||||| ||||| ||| |||| |||||     
T  51735171 aataaattgtcaacggaagtctctaacacaacacacaaaagatgtaagatggttacaatcatggaacgcggcatccacgttgcacttcaaccacgtctcg 51735270  T
Q  297 cttggtttctctcaaactgagatattaccttgcactctattctgcctattttgcacaactggt-ggtgagggatgtttatgaaacctcttgccattg 392  Q
    || |||||| | ||||||||||| |||| |||||| ||||||||||||| ||||||||  | | || |||||||||||||| |||||||||||||||    
T  51735271 ctcggtttcgcccaaactgagatgttacattgcaccctattctgcctatgttgcacaatcgatgggggagggatgtttatg-aacctcttgccattg 51735366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 10 - 415
Target Start/End: Original strand, 28537787 - 28538202
Alignment:
Q  10 ataatactcgaaataatagcgtagaattctaaatcactatgacccaaagaagatagatcttgcactagagtagaagagtcagactcgaaaagaactcgat 109  Q
    |||||||| |||| |||||| ||||||| | |||||| ||| |||| ||| |||||| ||||||||| |||||| ||||| |||| ||| | ||| || |    
T  28537787 ataatactagaaacaatagcatagaattttgaatcaccatggcccagagacgatagagcttgcactaaagtagatgagtcggacttgaacacaacccggt 28537886  T
Q  110 cccatcagttcacatcagcaaagtgaatggcatcgagtaa------------cccttcaaaactgtcgtatttgcctgctgccaattcgtttgagcccga 197  Q
    |||||| |||| ||||| ||||||||| ||| ||||||||            ||| ||||| || || ||||| || ||||||| |||||||||||||||    
T  28537887 cccatctgttcgcatcaacaaagtgaagggcctcgagtaaggctactgcctccccctcaaa-ctatcatattttcccgctgccatttcgtttgagcccga 28537985  T
Q  198 ataaattgtccacgggagtctctaacacaacacacaaaagatctaacttggttacggttatacaacgcggcatccacattgcatttcgaccaggtctcac 297  Q
    |||||||| ||  |||||||||||||||||||| ||||| || |||  |||||||| | ||  ||||| |||||||||||||| ||| |||| |||||      
T  28537986 ataaattgcccgtgggagtctctaacacaacacgcaaaatatgtaatatggttacgatcatggaacgcagcatccacattgcacttcaaccacgtctcgt 28538085  T
Q  298 ttggtttctctcaaactgagatattaccttgcactctattctgcctattttgcacaactggtggtgagggatgtttatgaaacctcttgccattgttgtc 397  Q
    | |||||||| ||||||||  | ||||||||||||||| | ||||  | ||| ||||  ||||||||| | |||||||| |||||||||||||||||| |    
T  28538086 tcggtttctcccaaactgaattgttaccttgcactctactgtgcccgtgttgtacaatcggtggtgagtggtgtttatg-aacctcttgccattgttgac 28538184  T
Q  398 atgcatctaatgatgtcc 415  Q
    ||||||||| || |||||    
T  28538185 atgcatctagtgttgtcc 28538202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 10 - 415
Target Start/End: Complemental strand, 2065040 - 2064623
Alignment:
Q  10 ataatactcgaaataatagcgtagaattctaaatcactatgacccaaagaagatagatcttgcactagagtagaagagtcagactcgaaaagaactcgat 109  Q
    |||||||| |||| |||||| || ||||   |||||| ||||||   ||| |||||| ||||  |||||||||| ||||| ||||| || | ||| |||     
T  2065040 ataatactagaaacaatagcatataatttcgaatcaccatgacctggagacgatagagcttgggctagagtagatgagtccgactcaaagacaacccgac 2064941  T
Q  110 cccatcagttcacatcagcaaagtgaatggcatcgagtaa-------------cccttcaaaactgtcgtatttgcctgctgccaattcgtttgagcccg 196  Q
     ||||| |||| ||||||||||||||| ||| ||||||||             |||||||| |||||| |||||||| |||| || || |||||||||||    
T  2064940 tccatctgttctcatcagcaaagtgaagggcgtcgagtaaggctactgcctcccccttcaatactgtcatatttgcccgctgtcattttgtttgagcccg 2064841  T
Q  197 aataaattgtccacgggagtctctaacacaacacacaaaagatctaacttggttacggttatacaacgcggcatccacattgcatttcgaccaggtctca 296  Q
    |||||||| ||| ||||||||||||||||||||| || | ||| |||  |||||||||| ||  |||| ||| ||||||||||| ||| |||| | |||     
T  2064840 aataaattatccgcgggagtctctaacacaacacgcagaggatgtaatatggttacggtcatggaacgtggcgtccacattgcacttcaaccacgactcg 2064741  T
Q  297 cttggtttctctcaaactgagatattaccttgcactctattctgcctattttgcacaactggtggtgagggatgtttatgaaacctcttgccattgttgt 396  Q
    ||  ||||||| ||||||||| | ||||||||||||||||| || |  | ||||||||| | |||||| || |||||| | |||||||||||||||||||    
T  2064740 ctcagtttctcccaaactgagttgttaccttgcactctattttgtccgtgttgcacaaccgatggtgaaggttgtttacg-aacctcttgccattgttgt 2064642  T
Q  397 catgcatctaatgatgtcc 415  Q
    ||||||||||| |||||||    
T  2064641 catgcatctaaagatgtcc 2064623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 10 - 415
Target Start/End: Original strand, 32577048 - 32577463
Alignment:
Q  10 ataatactcgaaataatagcgtagaattctaaatcactatgacccaaagaagatagatcttgcactagagtagaagagtcagactcgaaaagaactcgat 109  Q
    ||||||||  ||| ||| || ||||||||| |||||| ||| |||   || ||| || ||||||||||||||| ||||||||||||||| | ||| |  |    
T  32577048 ataatactataaacaatcgcatagaattctgaatcaccatgtcccgctgacgattgagcttgcactagagtagcagagtcagactcgaagacaacccagt 32577147  T
Q  110 cccatcagttcacatcagcaaagtgaatggcatcgagtaa-------------cccttcaaaactgtcgtatttgcctgctgccaattcgtttgagcccg 196  Q
    |||||  ||| ||||||||||||| ||| ||| |||||||             |||| |||||| ||| |||||||| | ||||| ||||||||||||||    
T  32577148 cccatatgtttacatcagcaaagtaaatagcagcgagtaaggctagtacctccccctccaaaacagtcatatttgcccgttgccatttcgtttgagcccg 32577247  T
Q  197 aataaattgtccacgggagtctctaacacaacacacaaaagatctaacttggttacggttatacaacgcggcatccacattgcatttcgaccaggtctca 296  Q
    ||||||||| || ||||| ||||||||||||||| |||||||| |||  |||||| ||| ||  ||||| |||||||||||||| ||| |||| |||||     
T  32577248 aataaattgccc-cgggaatctctaacacaacacgcaaaagatgtaagatggttaaggtcatggaacgcagcatccacattgcacttcaaccatgtctc- 32577345  T
Q  297 cttggtttctctcaaactgagatattaccttgcactctattctgcctattttgcacaactggtggtgagggatgtttatgaaacctcttgccattgttgt 396  Q
    || |||||||| ||||||||| | |||||||||||| ||||||| |  | ||||||||  ||| |||| ||||||||||| |||||||||||||||  |     
T  32577346 ctcggtttctcccaaactgagttgttaccttgcactatattctggccgtgttgcacaaacggtagtgacggatgtttatg-aacctcttgccattgccgc 32577444  T
Q  397 catgcatctaatgatgtcc 415  Q
    ||||||||||||| |||||    
T  32577445 catgcatctaatgttgtcc 32577463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 10 - 404
Target Start/End: Original strand, 37245852 - 37246262
Alignment:
Q  10 ataatactcgaaataatagcgtagaattctaaatcactatgacccaaagaagatagatcttgcactagagtagaagagtcagactcgaaaagaactcgat 109  Q
    |||||||| |||| |||||| ||||||||| |||||| ||| |||| ||| || ||| ||||||||| ||||| ||||||||||||||| | ||| || |    
T  37245852 ataatactagaaacaatagcatagaattctgaatcaccatggcccagagacgaaagagcttgcactaaagtagcagagtcagactcgaagacaacccggt 37245951  T
Q  110 cccatcagttcacatcagcaaagtgaatggcatcgagtaa-------------cccttcaaaactgtcgtatttgcctgctgccaattcgtttgagcccg 196  Q
    |||||| |||||||| |||||||||||| |||||||||||             |||| |||||||||| |||||||| | | ||| |||||||| |||||    
T  37245952 cccatctgttcacataagcaaagtgaatagcatcgagtaaggctactgcctccccctccaaaactgtcatatttgcccgtttccatttcgtttgtgcccg 37246051  T
Q  197 aataaattgtccacgggagtctctaacacaacacacaaaagatctaacttggttacggttatacaacgcggcatccacattgcatttcgaccaggtctca 296  Q
    ||||||||  || ||||||||||||||||||||  || | ||| |||   | ||||||| ||  |||||||||||||||||||| ||| |||| |||||     
T  37246052 aataaatttccctcgggagtctctaacacaacatgcagaggatgtaagacgattacggtcatggaacgcggcatccacattgcacttcaaccatgtctcg 37246151  T
Q  297 cttggtttctctcaaactgagatat----taccttgcactctattctgcctattttgcacaactggtggtgagggatgtttatgaaacctcttgccattg 392  Q
    || |||||||| |||||| || | |    |||||||||| |||||| |   || ||||||||| ||| |||||||||||||||| |||||| ||||||||    
T  37246152 ctcggtttctcccaaactaagttgttacgtaccttgcaccctattccggtcatgttgcacaaccggtagtgagggatgtttatg-aacctcatgccattg 37246250  T
Q  393 ttgtcatgcatc 404  Q
     || ||||||||    
T  37246251 ctgccatgcatc 37246262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 10 - 403
Target Start/End: Original strand, 18442147 - 18442549
Alignment:
Q  10 ataatactcgaaataatagcgtagaattctaaatcactatgacccaaagaagatagatcttgcactagagtagaagagtcagactcgaaaagaactcgat 109  Q
    |||||||| |||| |||||| ||||||||| |||||| |||  ||||||| |||| | ||||||||||  |||| |||||  ||||||||| ||| || |    
T  18442147 ataatactagaaacaatagcatagaattctgaatcaccatgggccaaagacgatatagcttgcactag--tagatgagtcgcactcgaaaataacccggt 18442244  T
Q  110 cccatcagttcacatcagcaaagtgaatggcatcgagtaa-------------cccttcaaaactgtcgtatttgcctgctgccaattcgtttgagcccg 196  Q
     ||||| |||| || |||||||||| | ||| ||||||||             |||| ||| |||||| ||||| || ||| ||| ||||||||||||||    
T  18442245 tccatctgttcgcaacagcaaagtgtagggcctcgagtaaggctactgcctccccctccaatactgtcatattttcccgcttccatttcgtttgagcccg 18442344  T
Q  197 aataaattgtccacgggagtctctaacacaacacacaaaagatctaacttggttacggttatacaacgcggcatccacattgcatttcgaccaggtctca 296  Q
    ||||||||| ||| |||||||||||||||||||| |||||| | |||  ||||| |||| ||  |||||| ||||| ||||||| ||| |||| |||||     
T  18442345 aataaattgcccatgggagtctctaacacaacacgcaaaagttgtaatatggttgcggtcatggaacgcgacatccgcattgcacttcaaccacgtctcg 18442444  T
Q  297 cttggtttctctcaaactgagatattaccttgcactctattctgcctattttgcacaactggtggtgagggatgtttatgaaacctcttgccattgttgt 396  Q
    || |||||||| ||||| ||| | ||||||||||||||||| || || | ||||||||| |||| ||| || |||||||| ||| ||||||||||||||     
T  18442445 ctcggtttctcccaaacagagttgttaccttgcactctattttgtctgtattgcacaaccggtgatga-ggttgtttatg-aacatcttgccattgttgc 18442542  T
Q  397 catgcat 403  Q
    |||||||    
T  18442543 catgcat 18442549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 150 - 415
Target Start/End: Original strand, 51259683 - 51259947
Alignment:
Q  150 cccttcaaaactgtcgtatttgcctgctgccaattcgtttgagcccgaataaattgtccacgggagtctctaacacaacacacaaaagatctaacttggt 249  Q
    |||| |||||||||| |||||||  | ||||| ||||||||||||||||| ||||| ||||| ||||||||||||||||| || |||||| |||  || |    
T  51259683 ccctccaaaactgtcatatttgctcgttgccatttcgtttgagcccgaatgaattgcccacgagagtctctaacacaacatacgaaagatgtaatatgtt 51259782  T
Q  250 tacggttatacaacgcggcatccacattgcatttcgaccaggtctcacttggtttctctcaaactgagatattaccttgcactctattctgcctattttg 349  Q
     ||||| ||  |||||||||||||||||||| ||| |||| |||||||  |||||||| ||||||||| | ||| ||||||||||||||||||  | |||    
T  51259783 gacggtcatgaaacgcggcatccacattgcagttcaaccacgtctcacgcggtttctcccaaactgagttgttagcttgcactctattctgcccgtgttg 51259882  T
Q  350 cacaactggtggtgagggatgtttatgaaacctcttgccattgttgtcatgcatctaatgatgtcc 415  Q
    | |||  | || |||||| |||||||| |||||| |||||||| || |||||||||| || |||||    
T  51259883 cgcaatcgatgatgagggttgtttatg-aacctcctgccattgctgccatgcatctagtgttgtcc 51259947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 10 - 406
Target Start/End: Original strand, 43840306 - 43840715
Alignment:
Q  10 ataatactcgaaataatagcgtagaattctaaatcactatgacccaaagaagatagatcttgcactagagtagaagagtcagactcgaaaagaactcgat 109  Q
    |||||||| |||| |||||| ||||||||  |||||| |||  || |||| |||||| |||||| ||||||||  |||||  ||||||| | ||  || |    
T  43840306 ataatactagaaacaatagcatagaattccgaatcaccatggtccgaagacgatagagcttgcattagagtagctgagtcgaactcgaagacaaaccggt 43840405  T
Q  110 cccatcagttcacatcagcaaagtgaatggcatcgagtaa--------------cccttcaaaactgtcgtatttgcctgctgccaattcgtttgagccc 195  Q
    | |||  |||||||||||||||||||||||||||||||||              |||| ||| |||||| |||||| | ||||||| ||||||||| |||    
T  43840406 ctcatttgttcacatcagcaaagtgaatggcatcgagtaaaggttgttgtctccccctccaacactgtcatatttgtccgctgccatttcgtttgacccc 43840505  T
Q  196 gaataaattgtccacgggagtctctaacacaacacacaaaagatctaacttggttacggttatacaacgcggcatccacattgcatttcgaccaggtctc 295  Q
    |||||||||||||||||||||||||||||||| || |||||||| |||  |||||| | | ||| |||||||||||||| ||| | ||| |||| |||||    
T  43840506 gaataaattgtccacgggagtctctaacacaaaacgcaaaagatgtaagatggttatgctcatagaacgcggcatccacgttgaacttcaaccacgtctc 43840605  T
Q  296 acttggtttctctcaaactgagatattaccttgcactctattctgcctattttgcacaactggtggtgagggatgtttatgaaacctcttgccattgttg 395  Q
        ||| |||| |||||| || | ||  ||||||||||||| |||   | ||||| ||  ||||||||||| | |||||| || |||||| ||||||||    
T  43840606 gtgcggtctctcccaaactaagttgttgtcttgcactctattatgctagtgttgcataatcggtggtgagggctttttatg-aatctcttgtcattgttg 43840704  T
Q  396 tcatgcatcta 406  Q
    |||||||||||    
T  43840705 tcatgcatcta 43840715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 10 - 415
Target Start/End: Complemental strand, 55735196 - 55734779
Alignment:
Q  10 ataatactcgaaataatagcgtagaattctaaatcactatgacccaaagaagatagatcttgcactagagtagaagagtcagactcgaaaagaactcgat 109  Q
    |||||||| |||| |||||| ||||||||| |||||| |||  || |||| |||||| |||||||||||||||| || || |||||||||| ||| || |    
T  55735196 ataatactagaaacaatagcatagaattctgaatcaccatggtccgaagacgatagagcttgcactagagtagatgaatcggactcgaaaataacccggt 55735097  T
Q  110 cccatcagttcacatcagcaaagtgaatggcatcgagtaa-------------cccttcaaaactgtcgtatttgcctgctgccaattcgtttgagcccg 196  Q
     ||||  |||| || || ||||||||| ||| ||||||||             |||| ||| |||||| |||||||  ||| ||| ||||||||||||||    
T  55735096 tccatgtgttcgcaacaacaaagtgaagggcctcgagtaaggctactgcctccccctccaatactgtcatatttgctcgcttccatttcgtttgagcccg 55734997  T
Q  197 aataaattgtccacgggagtctctaacacaacacacaaaagatctaacttggttacggttatacaacgcggcatccacattgcatttcgaccaggtctca 296  Q
    || ||||||  || |||||||||||||||||||| |||||||| |||  |||||  | | ||  | |||| ||||||||||||| ||| ||||  ||||     
T  55734996 aacaaattgctcatgggagtctctaacacaacacgcaaaagatgtaatatggttgagatcatggagcgcgacatccacattgcacttcaaccacatctcg 55734897  T
Q  297 cttggtttctctcaaactgagatattaccttgcactctattctgcctattttgcacaactggtggtgagggatgtttatgaaacctcttgccattgttgt 396  Q
    || |||||||| ||||| ||| | ||||||||||||||||| || || | ||||||||| | || ||| || |||||||| ||| ||||||||||||||     
T  55734896 ctcggtttctcccaaaccgagttgttaccttgcactctattttgtctgtattgcacaaccgatgatgatggttgtttatg-aacatcttgccattgttgc 55734798  T
Q  397 catgcatctaatgatgtcc 415  Q
    ||| |||||| || |||||    
T  55734797 catacatctagtgttgtcc 55734779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 10 - 415
Target Start/End: Original strand, 49119400 - 49119804
Alignment:
Q  10 ataatactcgaaataatagcgtagaattctaaatcactatgacccaaagaagatagatcttgcactagagtagaagagtcagactcgaaaagaactcgat 109  Q
    |||||||| |||| ||| || || |||||||||| || ||| |||   || |||||| || |||||||||||  ||||||||||| ||| | ||| || |    
T  49119400 ataatactagaaacaatcgcatataattctaaattaccatgtcccgctgacgatagagctggcactagagtatcagagtcagacttgaagacaacccggt 49119499  T
Q  110 cccatcagttcacatcagcaaagtgaatggcatcgagtaa-------------cccttcaaaactgtcgtatttgcctgctgccaattcgtttgagcccg 196  Q
    |||||| ||| ||||||||||||||||| ||| |||||||             |||| |||||| ||| |||||||||| ||||| ||||||||||||||    
T  49119500 cccatctgtttacatcagcaaagtgaatagcagcgagtaaggctactgcctccccctccaaaacagtcatatttgcctgttgccatttcgtttgagcccg 49119599  T
Q  197 aataaattgtccacgggagtctctaacacaacacacaaaagatctaacttggttacggttatacaacgcggcatccacattgcatttcgaccaggtctca 296  Q
    ||             ||| |||||||||||||||||||||||| |||  |||||||||| ||  |||||||||||||||||||| |||  ||| |||||     
T  49119600 aa-------------ggaatctctaacacaacacacaaaagatgtaagatggttacggtcatggaacgcggcatccacattgcacttcagccatgtctcg 49119686  T
Q  297 cttggtttctctcaaactgagatattaccttgcactctattctgcctattttgcacaactggtggtgagggatgtttatgaaacctcttgccattgttgt 396  Q
    |||||||| || ||||||| | | ||||||| |||||||||||| |  | | |||||||   | |||| ||||||||||| ||||||||||||||| ||     
T  49119687 cttggtttatcccaaactgggttgttaccttacactctattctggccgtgtggcacaaccaatagtgatggatgtttatg-aacctcttgccattgctgc 49119785  T
Q  397 catgcatctaatgatgtcc 415  Q
    ||||||||||||| |||||    
T  49119786 catgcatctaatgctgtcc 49119804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 68 - 415
Target Start/End: Complemental strand, 56065758 - 56065399
Alignment:
Q  68 cttgcactagagtagaagagtcagactcgaaaagaactcgatcccatcagttcacatcagcaaagtgaatggcatcgagtaa-------------ccctt 154  Q
    |||||||||||||||  ||||| |||||||| | ||| || ||||||   ||| || |||||||||||||||||||||||||             ||||     
T  56065758 cttgcactagagtagctgagtcggactcgaagacaacccggtcccatatattcccaacagcaaagtgaatggcatcgagtaaggcaactgcctccccctc 56065659  T
Q  155 caaaactgtcgtatttgcctgctgccaattcgtttgagcccgaataaattgtccacgggagtctctaacacaacacacaaaagatctaacttggttacgg 254  Q
    |||||||||| |||||||  | || || ||||||||||||||||| ||||| |||||||||||||||| ||||||| | |||||| |||  || | ||||    
T  56065658 caaaactgtcatatttgctcgttgtcatttcgtttgagcccgaatgaattgcccacgggagtctctaaaacaacacgcgaaagatgtaatatgttgacgg 56065559  T
Q  255 ttatacaacgcggcatccacattgcatttcgaccaggtctcacttggtttctctcaaactgagatattaccttgcactctattctgcctattttgcacaa 354  Q
    | ||  ||| || ||||||||||||| ||| |||| |||||||   ||||||| ||||||||| | ||| ||||||||||||||||||  | ||||||||    
T  56065558 tcatgaaacacgacatccacattgcacttcaaccacgtctcacacagtttctcccaaactgagttgttagcttgcactctattctgcccgtgttgcacaa 56065459  T
Q  355 ctggtggtgagggatgtttatgaaacctcttgccattgttgtcatgcatctaatgatgtcc 415  Q
      | ||  ||||| |||||||| |||||| |||||||| || |||||||||| || |||||    
T  56065458 tcgatgacgagggttgtttatg-aacctcctgccattgctgccatgcatctagtgttgtcc 56065399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 31 - 415
Target Start/End: Complemental strand, 21321695 - 21321297
Alignment:
Q  31 tagaattctaaatcactatgacccaaagaagatagatc--ttgcactagagtagaagagtcagactcgaaaagaactcgatcccatcagttcacatcagc 128  Q
    ||||||||| |||||| |||||||  |||  ||||| |  ||||||||||||||| ||||| |||||||| | ||| || ||||||| |||  ||||||     
T  21321695 tagaattctgaatcaccatgaccctgagacaatagagcaattgcactagagtagatgagtcggactcgaagacaacccggtcccatctgttagcatcaga 21321596  T
Q  129 aaagtgaatggcatcgagtaa-------------cccttcaaaactgtcgtatttgcctgctgccaattcgtttgagcccgaataaattgtccacgggag 215  Q
    |||||||| ||| ||||||||             |||| |||||||||| |||||||| | ||||| ||||||||||||||||||||||  || || |||    
T  21321595 aaagtgaagggcctcgagtaaggctattgtctccccctccaaaactgtcatatttgcccgttgccatttcgtttgagcccgaataaatttcccgcgagag 21321496  T
Q  216 tctctaacacaacacacaaaagatctaacttggttacggttatacaacgcggcatccacattgcatttcgaccaggtctcacttggtttctctcaaactg 315  Q
    ||||||| ||||||  |||||| | |||  |||||||||| ||  |||||  ||||||||||||| ||| |||| || || || | |||||| |||||||    
T  21321495 tctctaatacaacatgcaaaagttgtaatatggttacggtcatggaacgcaacatccacattgcacttcaaccacgtttcgctcgatttctcccaaactg 21321396  T
Q  316 agatattaccttgcactctattctgcctattttgcacaactggtggtgagggatgtttatgaaacctcttgccattgttgtcatgcatctaatgatgtcc 415  Q
     | | || |||||||||||||| |||   | ||| ||||| ||| |||||||||||||||| ||| ||||||||||| || || ||||||| || |||||    
T  21321395 tgttgttgccttgcactctattatgctcgtgttgtacaaccggtagtgagggatgtttatg-aacatcttgccattgctgccaagcatctagtgctgtcc 21321297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 10 - 415
Target Start/End: Complemental strand, 28426370 - 28425965
Alignment:
Q  10 ataatactcgaaataatagcgtagaattctaaatcactatgacccaaagaagatagatcttgcactagagtagaagagtcagactcgaaaagaactcgat 109  Q
    |||||||| |||| ||| || || |||||||||| || ||| |||   || |||||| || |||||||||||  ||||||||||| ||| | ||| || |    
T  28426370 ataatactagaaacaatcgcatataattctaaattaccatgtcccgctgacgatagagctggcactagagtatcagagtcagacttgaagacaacccggt 28426271  T
Q  110 cccatcagttcacatcagcaaagtgaatggcatcgagtaa-------------cccttcaaaactgtcgtatttgcctgctgccaattcgtttgagcccg 196  Q
    |||||| ||| ||||||||||||||||| ||| |||||||             |||| |||||| ||| |||||||||| ||||| ||||||||||||||    
T  28426270 cccatctgtttacatcagcaaagtgaatagcagcgagtaaggctactgcctccccctccaaaacagtcatatttgcctgttgccatttcgtttgagcccg 28426171  T
Q  197 aataaattgtccacgggagtctctaacacaacacacaaaagatctaacttggttacggttatacaacgcggcatccacattgcatttcgaccaggtctca 296  Q
    ||             ||| |||||||||||||||||||||||| |||  |||||||||| ||  |||||||||||||||||||| |||  ||| |||||     
T  28426170 aa-------------ggaatctctaacacaacacacaaaagatgtaagatggttacggtcatggaacgcggcatccacattgcacttcagccatgtctcg 28426084  T
Q  297 cttggtttctctcaaact-gagatattaccttgcactctattctgcctattttgcacaactggtggtgagggatgtttatgaaacctcttgccattgttg 395  Q
    |||||||| || |||||| | | | ||||||| |||||||||||| |  | | |||||||   | |||| ||||||||||| ||||||||||||||| ||    
T  28426083 cttggtttatcccaaactggggttgttaccttacactctattctggccgtgtggcacaaccaatagtgatggatgtttatg-aacctcttgccattgctg 28425985  T
Q  396 tcatgcatctaatgatgtcc 415  Q
     ||||||||||||| |||||    
T  28425984 ccatgcatctaatgctgtcc 28425965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 10 - 149
Target Start/End: Original strand, 26422602 - 26422741
Alignment:
Q  10 ataatactcgaaataatagcgtagaattctaaatcactatgacccaaagaagatagatcttgcactagagtagaagagtcagactcgaaaagaactcgat 109  Q
    ||||||||  ||| ||| || ||||||||| |||||||||| |||   || |||||| ||||||||||||||  ||||||||||||||| | ||| ||||    
T  26422602 ataatactaaaaacaatcgcatagaattctgaatcactatgtcccgctgacgatagagcttgcactagagtatcagagtcagactcgaagacaacccgat 26422701  T
Q  110 cccatcagttcacatcagcaaagtgaatggcatcgagtaa 149  Q
    |||||| ||| ||||||||||||| ||| |||||||||||    
T  26422702 cccatctgtttacatcagcaaagtaaatagcatcgagtaa 26422741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 150 - 312
Target Start/End: Original strand, 41835464 - 41835626
Alignment:
Q  150 cccttcaaaactgtcgtatttgcctgctgccaattcgtttgagcccgaataaattgtccacgggagtctctaacacaacacacaaaagatctaacttggt 249  Q
    |||| |||||||||| |||||||| |||| || || ||||||||||||||||||||||  || |||||||||||||||||| |||||| | |||  ||||    
T  41835464 ccctccaaaactgtcatatttgccagctgtcattttgtttgagcccgaataaattgtctgcgagagtctctaacacaacacgcaaaagttgtaatatggt 41835563  T
Q  250 tacggttatacaacgcggcatccacattgcatttcgaccaggtctcacttggtttctctcaaa 312  Q
    |||| | |   |||| ||||||||||||||| ||| |||| ||||| || | |||||| ||||    
T  41835564 tacgttcaaggaacgtggcatccacattgcacttcaaccacgtctcgctcgatttctcccaaa 41835626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 10 - 149
Target Start/End: Original strand, 47226330 - 47226469
Alignment:
Q  10 ataatactcgaaataatagcgtagaattctaaatcactatgacccaaagaagatagatcttgcactagagtagaagagtcagactcgaaaagaactcgat 109  Q
    |||||||| |||| |||||| || || ||| |||||| ||| ||  |||| |||||| ||||| ||| |||||| ||||| |||||||| | ||||||||    
T  47226330 ataatactagaaacaatagcatataaatctgaatcaccatggcctgaagacgatagagcttgctctaaagtagatgagtcggactcgaacacaactcgat 47226429  T
Q  110 cccatcagttcacatcagcaaagtgaatggcatcgagtaa 149  Q
    | |||| |||| |||||||||||||||  || ||||||||    
T  47226430 ctcatctgttcgcatcagcaaagtgaaaagcctcgagtaa 47226469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 149
Target Start/End: Original strand, 51259529 - 51259668
Alignment:
Q  10 ataatactcgaaataatagcgtagaattctaaatcactatgacccaaagaagatagatcttgcactagagtagaagagtcagactcgaaaagaactcgat 109  Q
    |||||||| |||| |||| | || |||||| |||||| ||| ||| |||| |||||  |||||||||||||||  ||||| |||||||| | |||  | |    
T  51259529 ataatactagaaacaataacataaaattctgaatcaccatggcccgaagacgatagcgcttgcactagagtagctgagtcggactcgaagacaacctggt 51259628  T
Q  110 cccatcagttcacatcagcaaagtgaatggcatcgagtaa 149  Q
    || | | | || || |||||||||||||| ||||||||||    
T  51259629 ccgaactgatcccaacagcaaagtgaatgacatcgagtaa 51259668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 118; Significance: 5e-60; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 10 - 406
Target Start/End: Complemental strand, 28107326 - 28106918
Alignment:
Q  10 ataatactcgaaataatagcgtagaattctaaatcactatgacccaaagaagatagatcttgcactagagtagaagagtcagactcgaaaagaactcgat 109  Q
    |||||||| |||| |||| | ||||||||| |||||| ||| |||  ||| |||||| |||||||||||||||  |||| ||||||||| | |||  |||    
T  28107326 ataatactagaaacaataacatagaattctgaatcaccatggcccggagacgatagagcttgcactagagtagcggagttagactcgaagacaacgtgat 28107227  T
Q  110 cccatcagttcacatcagcaaagtgaatggcatcgagtaa-------------cccttcaaaactgtcgtatttgcctgctgccaattcgtttgagcccg 196  Q
    ||||||  |||| ||  ||||||||||||||||| |||||             |||| |||||||||| ||| || | ||||||| |||||||||||| |    
T  28107226 cccatctattcatatttgcaaagtgaatggcatcaagtaaggctactgcctccccctccaaaactgtcatatctgtccgctgccatttcgtttgagcctg 28107127  T
Q  197 aataaattgtccacgggagtctctaacacaacacacaaaagatctaacttggttacggttatacaacgcggcatccacattgcatttcgaccaggtctca 296  Q
    |||||||||||||||||||||||||||||||||||| |||||| |||  |||||||| | ||  |||| ||| ||| | ||||| ||| |||| |||||     
T  28107126 aataaattgtccacgggagtctctaacacaacacacgaaagatgtaagatggttacgatcatggaacgtggcttcctcgttgcacttcaaccacgtctcg 28107027  T
Q  297 cttggtttctctcaaactgagatattaccttgcactctattctgcctattttgcacaactggtggtgagggatgtttatgaaacctcttgccattgttgt 396  Q
     |||||||||| ||||||||||| ||||||||||||||||| ||| | | |||||||||   ||||||  |||||||||| ||||||||||||||||||     
T  28107026 tttggtttctcccaaactgagatgttaccttgcactctattttgcatgtgttgcacaaccaatggtgaaagatgtttatg-aacctcttgccattgttgc 28106928  T
Q  397 catgcatcta 406  Q
    ||||||||||    
T  28106927 catgcatcta 28106918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 150 - 415
Target Start/End: Complemental strand, 14680196 - 14679929
Alignment:
Q  150 cccttcaaaactgtcgtatttgcctgctgccaattcgtttgagcccgaataaattgtccac---gggagtctctaacacaacacacaaaagatctaactt 246  Q
    |||| ||| |||||| ||||| || ||||||| ||| ||||||||  ||||||||| || |   |||||||||||||||||||  |||||||| |||  |    
T  14680196 ccctccaatactgtcatattttcccgctgccatttcatttgagccataataaattgcccgccgcgggagtctctaacacaacatgcaaaagatgtaatgt 14680097  T
Q  247 ggttacggttatacaacgcggcatccacattgcatttcgaccaggtctcacttggtttctctcaaactgagatattaccttgcactctattctgcctatt 346  Q
    |||| |||| ||  ||||||| |||||||||||| ||| |||| ||||| || |||||||| ||||||||| | ||||||||||||||||| |||   |     
T  14680096 ggttgcggtcatggaacgcggtatccacattgcacttcaaccatgtctcgctcggtttctcccaaactgagttgttaccttgcactctattatgctcgtg 14679997  T
Q  347 ttgcacaactggtggtgagggatgtttatgaaacctcttgccattgttgtcatgcatctaatgatgtcc 415  Q
    |||||||||| |||||||| | |||||||| |||||||| ||||||| | |||||||||| || |||||    
T  14679996 ttgcacaactagtggtgagagttgtttatg-aacctctttccattgtggccatgcatctagtgttgtcc 14679929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 10 - 415
Target Start/End: Original strand, 15605994 - 15606418
Alignment:
Q  10 ataatactcgaaataatagcgtagaattctaaatcactatgacccaaagaagatagatcttgcactagagtagaagagtcagactcgaaaagaactcgat 109  Q
    |||||||| |||| |||||| |||  |||| |||||| |||||| | ||| |||||| |||||||||||||||  ||||| |||| ||| | ||| || |    
T  15605994 ataatactagaaacaatagcatagtgttctgaatcaccatgacctagagacgatagagcttgcactagagtagctgagtcggacttgaagacaacccggt 15606093  T
Q  110 cccatcagttcacatcagcaaagtgaatggcatcgagtaa-------------cccttcaaaactgtcgtatttgcctgctgccaattcgtttgagcccg 196  Q
    |||||  |||| ||||| ||||||||||||||||||||||             |||| |||||||||| | ||| || ||||||| || |||||||||||    
T  15606094 cccatttgttcccatcaacaaagtgaatggcatcgagtaaggctactgcctccccctccaaaactgtcatgttttcccgctgccattttgtttgagcccg 15606193  T
Q  197 aataaattgtccacgggagtctctaacacaacacacaaaagatctaacttggttacggttatacaacgcggcatccacattgcatttcgaccaggtctca 296  Q
    ||||| ||| ||| ||||||||||||||||||||  ||||||| |||  |||||||| |  |  || ||||||||||||||||| ||| |||| |||||     
T  15606194 aataagttgcccatgggagtctctaacacaacacgaaaaagatgtaatatggttacgatcgtgaaatgcggcatccacattgcacttcaaccatgtctcg 15606293  T
Q  297 cttggtttctctcaaactg-------agatattaccttgcactctattctgcctattttgcacaactggtggtgagggatgtttatgaaacctcttgcca 389  Q
       |||||||| |||||||       || | ||||||||||||||||  | ||  | ||||| | | ||||||||| | |||||||| |||||| |||||    
T  15606294 tgcggtttctcccaaactgagttgttagttgttaccttgcactctatgtttcccgtgttgcatagccggtggtgagtgttgtttatg-aacctcctgcca 15606392  T
Q  390 ttgttgtcatgcatctaatgatgtcc 415  Q
    |||||| |||| ||||| ||||||||    
T  15606393 ttgttgccatgaatctagtgatgtcc 15606418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 10 - 145
Target Start/End: Original strand, 19690879 - 19691014
Alignment:
Q  10 ataatactcgaaataatagcgtagaattctaaatcactatgacccaaagaagatagatcttgcactagagtagaagagtcagactcgaaaagaactcgat 109  Q
    |||||||| |||| |||  | |||||||| ||||||| ||||| || ||| |||||| ||||||||| |||||  |||||||||||||| | |||||| |    
T  19690879 ataatactagaaacaatgacatagaattccaaatcaccatgactcagagacgatagagcttgcactaaagtagctgagtcagactcgaagacaactcggt 19690978  T
Q  110 cccatcagttcacatcagcaaagtgaatggcatcga 145  Q
    | |||| |||||||||||||||||||||| ||||||    
T  19690979 cacatctgttcacatcagcaaagtgaatgacatcga 19691014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 11 - 239
Target Start/End: Original strand, 29368057 - 29368296
Alignment:
Q  11 taatactcgaaataatagcgtagaattctaaatcactatgacccaaagaagatagatcttgcactagagtagaagagtcagactcgaaaagaactcgatc 110  Q
    ||||||| |||  |||||| |||||||   ||||||||||||||  ||| |||||| ||||||||| |||||| ||||| |||||||||| |  | | ||    
T  29368057 taatactagaagcaatagcatagaattacgaatcactatgacccggagacgatagagcttgcactatagtagatgagtcggactcgaaaacagttaggtc 29368156  T
Q  111 ccatcagttcacatcagcaaagtgaatggcatcgagtaa-------------cccttcaaaactgtcgtatttgcctgctgccaattcgtttgagcccga 197  Q
    |||||  ||  ||||||||||||||| ||| ||||||||             |||| |||||||||| |||||  | ||||||| ||| ||||||  |||    
T  29368157 ccatctattagcatcagcaaagtgaagggcctcgagtaaggatattgcctccccctccaaaactgtcatatttatccgctgccatttcttttgag--cga 29368254  T
Q  198 ataaattgtccacgggagtctctaacacaacacacaaaagat 239  Q
    |||||||||||||| ||||||| |||||||||| ||||||||    
T  29368255 ataaattgtccacgagagtctcaaacacaacacgcaaaagat 29368296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 292 - 415
Target Start/End: Original strand, 30802265 - 30802387
Alignment:
Q  292 tctcacttggtttctctcaaactgagatattaccttgcactctattctgcctattttgcacaactggtggtgagggatgtttatgaaacctcttgccatt 391  Q
    |||| ||| |||| || ||||||||| |  |||||||||||||||||||||| | || |||||| | ||||||||| |||||||| ||  |||| |||||    
T  30802265 tctcgcttagtttttcccaaactgagttggtaccttgcactctattctgcctgtgttccacaaccgttggtgagggctgtttatg-aatgtcttaccatt 30802363  T
Q  392 gttgtcatgcatctaatgatgtcc 415  Q
    ||||||||||||||| || |||||    
T  30802364 gttgtcatgcatctagtgttgtcc 30802387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 15053364 - 15053430
Alignment:
Q  186 gtttgagcccgaataaattgtccacgggagtctctaacacaacacacaaaagatctaacttggttac 252  Q
    ||||||||||||||||||||||||| | ||||||||||||||||| |||||||| |||  |||||||    
T  15053364 gtttgagcccgaataaattgtccactgaagtctctaacacaacacgcaaaagatgtaagatggttac 15053430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 301 - 415
Target Start/End: Original strand, 19364249 - 19364362
Alignment:
Q  301 gtttctctcaaactgagatattaccttgcactctattctgcctattttgcacaactggtggtgagggatgtttatgaaacctcttgccattgttgtcatg 400  Q
    ||||||| ||||||||| | ||||||||||||| ||| |||   | |||||||   | ||||||||| |||||||||| ||||| |||||||||||||||    
T  19364249 gtttctcccaaactgagttgttaccttgcactcgattttgctcgtgttgcacatgcgttggtgagggttgtttatgaa-cctctcgccattgttgtcatg 19364347  T
Q  401 catctaatgatgtcc 415  Q
    |||||| || |||||    
T  19364348 catctagtgttgtcc 19364362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 204
Target Start/End: Original strand, 11731819 - 11731873
Alignment:
Q  150 cccttcaaaactgtcgtatttgcctgctgccaattcgtttgagcccgaataaatt 204  Q
    |||| |||||||||| |||||||| ||||||| || ||||||||||| |||||||    
T  11731819 ccctccaaaactgtcatatttgcccgctgccattttgtttgagcccggataaatt 11731873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 155 - 205
Target Start/End: Original strand, 30802149 - 30802199
Alignment:
Q  155 caaaactgtcgtatttgcctgctgccaattcgtttgagcccgaataaattg 205  Q
    |||||||||| |||||||| ||||||| || |||| |||||||||||||||    
T  30802149 caaaactgtcatatttgcccgctgccattttgtttaagcccgaataaattg 30802199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 415
Target Start/End: Original strand, 29368406 - 29368453
Alignment:
Q  367 gatgtttatgaaacctcttgccattgttgtcatgcatctaatgatgtcc 415  Q
    |||||||||||| ||||||||||||| ||||||||||||| || |||||    
T  29368406 gatgtttatgaa-cctcttgccattgctgtcatgcatctagtgttgtcc 29368453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 115; Significance: 3e-58; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 10 - 415
Target Start/End: Complemental strand, 20205142 - 20204725
Alignment:
Q  10 ataatactcgaaataatagcgtagaattctaaatcactatgacccaaagaagatagatcttgcactagagtagaagagtcagactcgaaaagaactcgat 109  Q
    |||||||| |||| |||||| ||||||| | |||||| |||||||  ||| |||||| |||||||||||||||| ||||| |||||||| | |||||| |    
T  20205142 ataatactagaaacaatagcatagaattttgaatcaccatgacccggagaggatagagcttgcactagagtagatgagtcggactcgaagacaactcggt 20205043  T
Q  110 cccatcagttcacatcagcaaagtgaatggcatcgagtaa-------------cccttcaaaactgtcgtatttgcctgctgccaattcgtttgagcccg 196  Q
     ||||| |||| || || ||||||||||||| ||||||||             |||| ||| |||||| |||||||| | ||||| |||||||||||| |    
T  20205042 tccatctgttcgcaacaacaaagtgaatggcctcgagtaaggctactgcctccccctccaatactgtcatatttgcccgttgccatttcgtttgagcctg 20204943  T
Q  197 aataaattgtccacgggagtctctaacacaacacacaaaagatctaacttggttacggttatacaacgcggcatccacattgcatttcgaccaggtctca 296  Q
     |||||||  || |||||||||||| ||||| |   ||||||| |||  |||||| ||| ||  |||||||||||||||||||| ||| |||| ||||||    
T  20204942 gataaatttcccgcgggagtctctagcacaaaatgtaaaagatgtaatatggttatggtcatggaacgcggcatccacattgcacttcaaccatgtctca 20204843  T
Q  297 cttggtttctctcaaactgagatattaccttgcactctattctgcctattttgcacaactggtggtgagggatgtttatgaaacctcttgccattgttgt 396  Q
     |||||||||| ||||||||| ||||||||| ||||||||| ||| | | |||||||||    |||||||| |||||||| ||||||||||||||||||     
T  20204842 tttggtttctcccaaactgagttattaccttacactctattttgcttgtgttgcacaaccaagggtgagggttgtttatg-aacctcttgccattgttgc 20204744  T
Q  397 catgcatctaatgatgtcc 415  Q
    |||||||||| || |||||    
T  20204743 catgcatctagtgctgtcc 20204725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 61 - 414
Target Start/End: Original strand, 22767308 - 22767673
Alignment:
Q  61 gatagatcttgcactagagtagaagagtcagactcgaaaagaactcgatcccatcagttcacatcagcaaagtgaatggcatcgagtaa----------- 149  Q
    |||||| ||||||||||||||  ||||||| ||||||| | ||| || ||||||| ||| ||||||||||||||||| ||| |||||||               
T  22767308 gatagagcttgcactagagtatcagagtcaaactcgaagacaacccggtcccatctgtttacatcagcaaagtgaatagcagcgagtaaggctactgcct 22767407  T
Q  150 --cccttcaaaactgtcgtatttgcctgctgccaattcgtttgagcccgaataaattgtccacgggagtctctaacacaacacacaaaagatctaacttg 247  Q
      |||| |||||| ||| |||||||| | ||||| ||||||||||||||||||||||| || ||||| ||||||||||||||| |||||||| |||  ||    
T  22767408 ccccctccaaaacagtcatatttgcccgttgccatttcgtttgagcccgaataaattgcccccgggaatctctaacacaacacgcaaaagatgtaagatg 22767507  T
Q  248 gttacggttatacaacgcggcatccacattgcatttcgaccaggtctcacttggtttctctcaaactgagatattaccttgcactctattctgcctattt 347  Q
     |||| || ||  |||||||||||||||||||| ||| |||| ||||| || |||||||| ||||||||| | ||||||||||||||||| || |  | |    
T  22767508 attactgtcatggaacgcggcatccacattgcacttcaaccatgtctcgctcggtttctcccaaactgagttgttaccttgcactctattttggccgtgt 22767607  T
Q  348 tgcacaactggtggtgagggatgtttatgaaacctcttgccattgttgtcatgcatctaatgatgtc 414  Q
     |||||||  || |||| ||||||||||| ||||||||||||||| || ||||||||||||| ||||    
T  22767608 ggcacaaccagtagtgatggatgtttatg-aacctcttgccattgctgccatgcatctaatgttgtc 22767673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 155 - 406
Target Start/End: Original strand, 30222957 - 30223207
Alignment:
Q  155 caaaactgtcgtatttgcctgctgccaattcgtttgagcccgaataaattgtccacgggagtctctaacacaacacacaaaagatctaacttggttacgg 254  Q
    ||||||||||  ||| || |||||| ||||||||||||||||||||||||| ||| || ||||||||||||||||| |||||||| |||  ||||||| |    
T  30222957 caaaactgtcaaattcgcttgctgcaaattcgtttgagcccgaataaattgcccatggaagtctctaacacaacacgcaaaagatgtaatatggttacag 30223056  T
Q  255 ttatacaacgcggcatccacattgcatttcgaccaggtctcacttggtttctctcaaactgagatattaccttgcactctattctgcctattttgcacaa 354  Q
    | ||  |||||| | ||||  ||||| || ||||| ||||| |  |||||||| ||||| ||| | ||||||||||||||||||||||  | ||||||||    
T  30223057 tcatggaacgcgacgtccatgttgcactttgaccacgtctcgcacggtttctcccaaacagagttgttaccttgcactctattctgcccgtgttgcacaa 30223156  T
Q  355 ctggtggtgagggatgtttatgaaacctcttgccattgttgtcatgcatcta 406  Q
    ||| ||||||||| |||||||| ||||||||| |||||||||||||||||||    
T  30223157 ctgttggtgagggctgtttatg-aacctcttgtcattgttgtcatgcatcta 30223207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 10 - 406
Target Start/End: Original strand, 27532906 - 27533315
Alignment:
Q  10 ataatactcgaaataatagcgtagaattctaaatcactatgacccaaagaagatagatcttgcactagagtagaagagtcagactcgaaaagaactcgat 109  Q
    |||||||| |||| ||||||  |||||||| |||||| |||||||  ||| |||| |   ||||||| || || | |||| |||||||||| ||| || |    
T  27532906 ataatacttgaaacaatagcaaagaattctgaatcaccatgacccggagacgataaagtctgcactaaagaagcaaagtcggactcgaaaacaacccggt 27533005  T
Q  110 cccatcagttcacatcagcaaagtgaatggcatcgagtaa-------------cccttcaaaactgtcgtatttgcctgctgccaattcgtttgagcccg 196  Q
    ||||||  ||||||||||||||||||||| |||||| |||             |||| |||||||||  ||||| |||||| ||| ||||||||||||||    
T  27533006 cccatctattcacatcagcaaagtgaatgacatcgaataaagctattgcctccccctccaaaactgttatattttcctgctaccatttcgtttgagcccg 27533105  T
Q  197 aataaattgtccacgggagtctctaacacaacacac-aaaagatctaacttggttacggttatacaacgcggcatccacattgcatttcgaccaggtctc 295  Q
    ||||||||| |||||||||||||||||||||||| | ||||||| |||  |||||||| | ||  |||||| |||||||||| || |||   |  |||||    
T  27533106 aataaattgcccacgggagtctctaacacaacacgcaaaaagatgtaaactggttacgatcatggaacgcgacatccacattacacttcagtcgcgtctc 27533205  T
Q  296 acttggtttctctcaaactgagatattaccttgcactctattctgcctattttgcacaactggtggtgagggatgtttatgaaacctcttgccattgttg 395  Q
     |  | |||||| |||||| |  |||||||||||||| ||||||| || | ||||||||| |||||||||||||||||||| ||||||||| ||||||||    
T  27533206 gcgcgatttctcccaaactaaactattaccttgcactatattctgtctgtgttgcacaaccggtggtgagggatgtttatg-aacctcttgtcattgttg 27533304  T
Q  396 tcatgcatcta 406  Q
     ||||||||||    
T  27533305 ccatgcatcta 27533315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 183 - 415
Target Start/End: Original strand, 41940923 - 41941154
Alignment:
Q  183 ttcgtttgagcccgaataaattgtccacgggagtctctaacacaacacacaaaagatctaacttggttacggttatacaacgcggcatccacattgcatt 282  Q
    ||||||||||| ||||||||||  |||||||||||| |||||| ||||||||||||| |||  | |||||||| ||  |||||||||||||||||||| |    
T  41940923 ttcgtttgagctcgaataaatttcccacgggagtctttaacactacacacaaaagatgtaagatagttacggtcatggaacgcggcatccacattgcact 41941022  T
Q  283 tcgaccaggtctcacttggtttctctcaaactgagatattaccttgcactctattctgcctattttgcacaactggtggtgagggatgtttatgaaacct 382  Q
    || ||||  |||| || |||||||| |||| || | |  |||||||||||||||||||||  | ||||||||| ||||| ||||| |||||||| |||||    
T  41941023 tcaaccacatctcgctcggtttctcccaaattgggttgataccttgcactctattctgcccgtgttgcacaaccggtggcgagggttgtttatg-aacct 41941121  T
Q  383 cttgccattgttgtcatgcatctaatgatgtcc 415  Q
    ||||||||| |||||||| ||||| || |||||    
T  41941122 cttgccattattgtcatgtatctagtgttgtcc 41941154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 10 - 406
Target Start/End: Complemental strand, 8388273 - 8387865
Alignment:
Q  10 ataatactcgaaataatagcgtagaattctaaatcactatgacccaaagaagatagatcttgcactagagtagaagagtcagactcgaaaagaactcgat 109  Q
    |||||||| |||| |||||| || |||||| |||||| ||| ||   ||| |||||  |||||||||||||||  ||||| |||||||| | ||| || |    
T  8388273 ataatactggaaacaatagcataaaattctgaatcaccatggcctggagacgatagcgcttgcactagagtagctgagtcggactcgaagacaacccggt 8388174  T
Q  110 cccatcagttcacatcagcaaagtgaatggcatcgagtaa-------------cccttcaaaactgtcgtatttgcctgctgccaattcgtttgagcccg 196  Q
    |||||| |||| || | |||||||||||||||||||||||             |||| |||||||||| ||||||   | ||||| |||||||||||| |    
T  8388173 cccatctgttcccaaccgcaaagtgaatggcatcgagtaaggcaactgcctccccctccaaaactgtcatatttgttcgttgccatttcgtttgagcctg 8388074  T
Q  197 aataaattgtccacgggagtctctaacacaacacacaaaagatctaacttggttacggttatacaacgcggcatccacattgcatttcgaccaggtctca 296  Q
    ||| ||||| ||||| |||||||||||||||||| | |||||| |||  |  | ||||| ||  |||||||||||||||||| | ||| |||| ||||||    
T  8388073 aatgaattgcccacgagagtctctaacacaacacgcgaaagatgtaatattttaacggtcatgaaacgcggcatccacattgtacttcaaccacgtctca 8387974  T
Q  297 cttggtttctctcaaactgagatattaccttgcactctattctgcctattttgcacaactggtggtgagggatgtttatgaaacctcttgccattgttgt 396  Q
    |  |||||||| || |||||| | ||| ||||||||||||||||||  | ||||||||  | || |||||| |||||||| |||||| || ||||| ||     
T  8387973 cgcggtttctcccagactgagttgttagcttgcactctattctgcccgtgttgcacaatcgatgatgagggttgtttatg-aacctcctgtcattgctgc 8387875  T
Q  397 catgcatcta 406  Q
    ||||||||||    
T  8387874 catgcatcta 8387865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 10 - 289
Target Start/End: Complemental strand, 12660503 - 12660211
Alignment:
Q  10 ataatactcgaaataatagcgtagaattctaaatcactatgacccaaagaagatagatcttgcactagagtagaagagtcagactcgaaaagaactcgat 109  Q
    |||||||| |||| |||| | ||||||||| ||||||  || ||| |||| |||||| |||||||||||||||  |||||||||||||  | ||| || |    
T  12660503 ataatactagaaacaatatcatagaattctgaatcaccgtggcccgaagacgatagagcttgcactagagtagctgagtcagactcgacgataacacggt 12660404  T
Q  110 cccatcagttcacatcagcaaagtgaatggcatcgagtaacccttc-------------aaaactgtcgtatttgcctgctgccaattcgtttgagcccg 196  Q
    | |||  |||||||| ||||||||||||| ||||||||||  || |             || |||||| |||||||| ||||||| ||||||||||||||    
T  12660403 ctcatttgttcacattagcaaagtgaatgacatcgagtaagactactgcctcccgctctaacactgtcatatttgcccgctgccatttcgtttgagcccg 12660304  T
Q  197 aataaattgtccacgggagtctctaacacaacacacaaaagatctaacttggttacggttatacaacgcggcatccacattgcatttcgacca 289  Q
    ||||||||||||| |  ||||||||||||||||| |||||||| |||  |||||||| | ||  |||||||||||||||||||| ||| ||||    
T  12660303 aataaattgtccatgaaagtctctaacacaacacgcaaaagatgtaagatggttacgttcatggaacgcggcatccacattgcacttcaacca 12660211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 150 - 409
Target Start/End: Original strand, 15988902 - 15989160
Alignment:
Q  150 cccttcaaaactgtcgtatttgcctgctgccaattcgtttgagcccgaataaattgtccacgggagtctctaacacaacacacaaaagatctaacttggt 249  Q
    |||| |||||||||| |||||| | ||||||| |||||||||||||||||||||||  | ||  ||||||| ||| ||||| |||||| | |||  ||||    
T  15988902 ccctccaaaactgtcatatttgtccgctgccatttcgtttgagcccgaataaattgctcgcgaaagtctctgacataacacgcaaaagttgtaatatggt 15989001  T
Q  250 tacggttatacaacgcggcatccacattgcatttcgaccaggtctcacttggtttctctcaaactgagatattaccttgcactctattctgcctattttg 349  Q
    | |||| ||  |||||| |||||| ||| || ||| || | ||||| || |||||||| ||||||||| | ||||||||||||||||| |||   | |||    
T  15989002 tgcggtcatggaacgcgacatccatatttcacttcaacaacgtctcgctcggtttctcccaaactgagttgttaccttgcactctattatgctcgtgttg 15989101  T
Q  350 cacaactggtggtgagggatgtttatgaaacctcttgccattgttgtcatgcatctaatg 409  Q
    |||||| | | |||| || |||||||| |||||||||||||||||| |||||||||||||    
T  15989102 cacaaccgctagtgaaggttgtttatg-aacctcttgccattgttgccatgcatctaatg 15989160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 10 - 304
Target Start/End: Complemental strand, 25730995 - 25730688
Alignment:
Q  10 ataatactcgaaataatagcgtagaattctaaatcactatgacccaaagaagatagatcttgcactagagtagaagagtcagactcgaaaagaactcgat 109  Q
    |||||||| |||| |||| | ||||||||| |||||| |||||||  ||| |||||| |||||||||||||||| ||||| |||||||| | |||||  |    
T  25730995 ataatactagaaacaataacatagaattcttaatcaccatgaccctgagacgatagagcttgcactagagtagatgagtcggactcgaagacaactcagt 25730896  T
Q  110 cccatcagttcacatcagcaaagtgaatggcatcgagtaa-------------cccttcaaaactgtcgtatttgcctgctgccaattcgtttgagcccg 196  Q
    |||||| |||| ||||||||||||||| ||| ||||||||             |||| |||||||||| |||||||| ||||||| ||||||||||| ||    
T  25730895 cccatctgttcgcatcagcaaagtgaagggcctcgagtaaggctactgcctccccctccaaaactgtcatatttgcccgctgccatttcgtttgagctcg 25730796  T
Q  197 aataaattgtccacgggagtctctaacacaacacacaaaagatctaacttggttacggttatacaacgcggcatccacattgcatttcgaccaggtctca 296  Q
    ||||||||  || || ||| ||||||||||||||   |||  | |||  |||||||||| ||  ||||||| |||||||||||| ||| |||| |||||     
T  25730795 aataaatttcccgcgtgagactctaacacaacacgtgaaaattgtaatatggttacggtcatggaacgcggaatccacattgcacttcaaccacgtctcg 25730696  T
Q  297 cttggttt 304  Q
    || |||||    
T  25730695 ctcggttt 25730688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 11 - 252
Target Start/End: Complemental strand, 4268285 - 4268031
Alignment:
Q  11 taatactcgaaataatagcgtagaattctaaatcactatgacccaaagaagatagatcttgcactagagtagaagagtcagactcgaaaagaactcgatc 110  Q
    ||||||| |||| |||||| ||||||||  |||||| ||| |||  ||| |||||| |||||||||||||||| ||||| |||||||| | ||| || ||    
T  4268285 taatactagaaacaatagcatagaattccgaatcaccatggcccggagatgatagagcttgcactagagtagatgagtcggactcgaagaaaacccggtc 4268186  T
Q  111 ccatcagttcacatcagcaaagtgaatggcatcgagtaa-------------cccttcaaaactgtcgtatttgcctgctgccaattcgtttgagcccga 197  Q
    ||| | |||  ||||||||||||||| ||| || |||||             |||| |||||||||| |||||||| ||||||| || ||||||||| ||    
T  4268185 ccacctgttagcatcagcaaagtgaagggcctctagtaaggctactgcctccccctccaaaactgtcatatttgcccgctgccattttgtttgagcctga 4268086  T
Q  198 ataaattgtccacgggagtctctaacacaacacacaaaagatctaacttggttac 252  Q
    |||||||| ||||| |||||||||||||||||| |||||||| |||  |||||||    
T  4268085 ataaattgcccacgagagtctctaacacaacacgcaaaagatgtaatatggttac 4268031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 10 - 239
Target Start/End: Original strand, 34652254 - 34652495
Alignment:
Q  10 ataatactcgaaataatagcgtagaattctaaatcactatgacccaaagaagatagatcttgcactagagtagaagagtcagactcgaaaagaactcgat 109  Q
    |||||||| |||| |||| | || |||||| |||||| ||| |||| ||| | |||| |||||||||||||||  ||||| | |||||| | ||| ||||    
T  34652254 ataatactagaaacaataacatataattctgaatcaccatggcccagagacggtagagcttgcactagagtagtcgagtcgggctcgaagacaacccgat 34652353  T
Q  110 cccatcagttcacatcagcaaagtgaatggcatcgagtaa------------ccctt-caaaactgtcgtatttgcctgctgccaattcgtttgagcccg 196  Q
    |||||| ||||||||| |||||||||||||||||||||||            ||||| ||| |||||| |||||||  ||||||  || ||||||| |||    
T  34652354 cccatctgttcacatcggcaaagtgaatggcatcgagtaaggttattatctccccttacaacactgtcatatttgctcgctgcc-ttttgtttgagaccg 34652452  T
Q  197 aataaattgtccacgggagtctctaacacaacacacaaaagat 239  Q
     |||||||| |||||||||||||||||||||||||||||||||    
T  34652453 gataaattgcccacgggagtctctaacacaacacacaaaagat 34652495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 10 - 315
Target Start/End: Original strand, 26597457 - 26597775
Alignment:
Q  10 ataatactcgaaataatagcgtagaattctaaatcactatgacccaaagaagatagatcttgcactagagtagaagagtcagactcgaaaagaactcgat 109  Q
    |||||||| |||| |||| | || |||||  |||||| ||| |||  ||| |||||  |||||||||||||||  ||||| |||||||| | ||| || |    
T  26597457 ataatactagaaacaataacataaaattccgaatcaccatggcccggagacgatagcgcttgcactagagtagctgagtcggactcgaagacaacccggt 26597556  T
Q  110 cccatcagttcacatcagcaaagtgaatggcatcgagtaa-------------cccttcaaaactgtcgtatttgcctgctgccaattcgtttgagcccg 196  Q
    | ||||  ||| || | |||||||||||||||||||||||             |||| ||||| |||| |||||||  | ||||| ||||||||||||||    
T  26597557 ctcatctattcccaactgcaaagtgaatggcatcgagtaaggcaactgcctccccctccaaaattgtcatatttgctcgttgccatttcgtttgagcccg 26597656  T
Q  197 aataaattgtccacgggagtctctaacacaacacacaaaagatctaacttggttacggttatacaacgcggcatccacattgcatttcgaccaggtctca 296  Q
    ||| |||||||||||||||||||||||||||||| | |||||| |||  || | | | | ||  |||||||||||||||||||| ||| |||| |||| |    
T  26597657 aatgaattgtccacgggagtctctaacacaacacgcgaaagatgtaatatgttgatgatcatgaaacgcggcatccacattgcacttcaaccacgtctta 26597756  T
Q  297 cttggtttctctcaaactg 315  Q
    |  | |||||| |||||||    
T  26597757 cacgatttctcccaaactg 26597775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 11 - 406
Target Start/End: Complemental strand, 27292620 - 27292225
Alignment:
Q  11 taatactcgaaataatagcgtagaattctaaatcactatgacccaaagaagatagatcttgcactagagtagaagagtcagactcgaaaagaactcgatc 110  Q
    ||||||| |||| |||||| || ||||| ||||||| ||| ||   ||| ||||||  ||||||||||| ||| |||||  ||||||| | ||| || ||    
T  27292620 taatactagaaacaatagcataaaattccaaatcaccatggcctggagacgatagagtttgcactagagcagatgagtcgaactcgaagacaacccggtc 27292521  T
Q  111 ccatcagttcacatcagcaaagtgaatggcatcgagtaa-------------cccttcaaaactgtcgtatttgcctgctgccaattcgtttgagcccga 197  Q
    ||||| |||  ||||||||||||||| |||||| |||||             |||||||||||  |  |||||| | ||||||| || ||||||||||||    
T  27292520 ccatctgttatcatcagcaaagtgaagggcatctagtaaggctattgcctcccccttcaaaacaataatatttgtccgctgccattttgtttgagcccga 27292421  T
Q  198 ataaattgtccacgggagtctctaacacaacacacaaaagatctaacttggttacggttatacaacgcggcatccacattgcatttcgaccaggtctcac 297  Q
    |||||||| ||||| |||||||||||||||||  ||||| || |||  |||||||  | ||  |||| | ||||||||||||| ||| |||| | |||      
T  27292420 ataaattgcccacgagagtctctaacacaacatgcaaaatatgtaatatggttactatcatggaacgtgacatccacattgcacttcaaccatgactcgt 27292321  T
Q  298 ttggtttctctcaaactgagatattaccttgcactctattctgcctattttgcacaactggtggtgagggatgtttatgaaacctcttgccattgttgtc 397  Q
    | |||||||| ||||            ||||||| ||||||| ||| | ||||||||||  ||||||   ||||||||| |||||||||||||||||| |    
T  27292320 tcggtttctcccaaa------------cttgcacgctattctacctgtgttgcacaactaatggtgaacaatgtttatg-aacctcttgccattgttgac 27292234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 269 - 414
Target Start/End: Original strand, 34653864 - 34654007
Alignment:
Q  269 atccacattgcatttcgaccaggtctcacttggtttctctcaaactgagatattaccttgcactctattctgcctattttgcacaactggtggtgaggga 368  Q
    |||||||||||| ||| |||| |||||    |||||||| |||||| || | || ||| ||||||||||||||   | |||||||||||||| ||||||     
T  34653864 atccacattgcacttcaaccacgtctcgtgcggtttctcccaaacttagttgttgcct-gcactctattctgcacgtgttgcacaactggtgttgagggt 34653962  T
Q  369 tgtttatgaaacctcttgccattgttgtcatgcatctaatgatgtc 414  Q
    |||||||| || || |||||||||||| |||||||||| |||||||    
T  34653963 tgtttatg-aatcttttgccattgttgccatgcatctagtgatgtc 34654007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 153 - 229
Target Start/End: Complemental strand, 37448156 - 37448080
Alignment:
Q  153 ttcaaaactgtcgtatttgcctgctgccaattcgtttgagcccgaataaattgtccacgggagtctctaacacaaca 229  Q
    ||||| |||||| | |||||  ||||||| || ||||||| ||||||| |||||||||| |||||||||||||||||    
T  37448156 ttcaacactgtcatgtttgcacgctgccattttgtttgagtccgaatacattgtccacgagagtctctaacacaaca 37448080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 5 - 149
Target Start/End: Original strand, 41940732 - 41940875
Alignment:
Q  5 ggtagataatactcgaaataatagcgtagaattctaaatcactatgacccaaagaagatagatcttgcactagagtagaagagtcagactcgaaaagaac 104  Q
    |||| |||||||| |||| |||||| ||||||||| |||||| |||  ||| ||| ||||||  ||||||||||||||  ||||| |||||||| | |||    
T  41940732 ggtaaataatactagaaacaatagcatagaattctgaatcacaatggtccagagacgatagagtttgcactagagtagttgagtcggactcgaagacaac 41940831  T
Q  105 tcgatcccatcagttcacatcagcaaagtgaatggcatcgagtaa 149  Q
     || | |||   |||||||| ||||||||||||| ||| ||||||    
T  41940832 ccggt-ccagttgttcacatgagcaaagtgaatgacattgagtaa 41940875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 325 - 415
Target Start/End: Complemental strand, 4267970 - 4267881
Alignment:
Q  325 cttgcactctattctgcctattttgcacaactggtggtgagggatgtttatgaaacctcttgccattgttgtcatgcatctaatgatgtcc 415  Q
    ||||||||||||||||||  | ||||||||| | ||||||  ||| |||||||| ||||||||||||| || |||||||||| || |||||    
T  4267970 cttgcactctattctgcccgtgttgcacaaccgatggtgaacgatttttatgaa-cctcttgccattgctgccatgcatctagtgctgtcc 4267881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 150 - 280
Target Start/End: Original strand, 11375666 - 11375796
Alignment:
Q  150 cccttcaaaactgtcgtatttgcctgctgccaattcgtttgagcccgaataaattgtccacgggagtctctaacacaacacacaaaagatctaacttggt 249  Q
    |||| |||||||||| ||||| |  ||||||| |||||||||| ||||||||||   |  || |||||||||||||||||  |||||| | |||  ||||    
T  11375666 ccctccaaaactgtcatatttactcgctgccatttcgtttgagtccgaataaatcacctgcgagagtctctaacacaacatgcaaaagttgtaatatggt 11375765  T
Q  250 tacggttatacaacgcggcatccacattgca 280  Q
    |||| | ||  ||||| ||||||||||||||    
T  11375766 tacgttcatggaacgcagcatccacattgca 11375796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 111 - 149
Target Start/End: Complemental strand, 37448211 - 37448173
Alignment:
Q  111 ccatcagttcacatcagcaaagtgaatggcatcgagtaa 149  Q
    ||||| |||||||||||||||||||||| ||||||||||    
T  37448211 ccatctgttcacatcagcaaagtgaatgacatcgagtaa 37448173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 406
Target Start/End: Complemental strand, 16074659 - 16074515
Alignment:
Q  261 aacgcggcatccacattgcatttcgaccaggtctcacttggtttctctcaaactgagatattaccttgcactctattctgcctattttgcacaactggtg 360  Q
    |||||||||||||||||||| || ||||| ||||| |  ||||||||  ||||| || | |||  |||| || ||||||||| |||||||| | || |||    
T  16074659 aacgcggcatccacattgcactttgaccacgtctcgcacggtttctcctaaactaagttgttatattgccctatattctgcccattttgcaaagctagtg 16074560  T
Q  361 gtgagggatgtttatgaaacctcttgccattgttgtcatgcatcta 406  Q
    || | |  |||||||| || |||||| |||||||| || |||||||    
T  16074559 gtaatgcttgtttatg-aatctcttgtcattgttgccaagcatcta 16074515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 110; Significance: 3e-55; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 10 - 406
Target Start/End: Complemental strand, 88746 - 88338
Alignment:
Q  10 ataatactcgaaataatagcgtagaattctaaatcactatgacccaaagaagatagatcttgcactagagtagaagagtcagactcgaaaagaactcgat 109  Q
    |||||||| |||| |||||| ||||||||| |||||| |||| |   ||| |||||| |||||||||||||||| ||||| |||||||| | ||| || |    
T  88746 ataatactggaaacaatagcatagaattctgaatcaccatgatcttgagacgatagagcttgcactagagtagatgagtcggactcgaagacaacccggt 88647  T
Q  110 cccatcagttcacatcagcaaagtgaatggcatcgagtaa-------------cccttcaaaactgtcgtatttgcctgctgccaattcgtttgagcccg 196  Q
    |||||| |||  ||||| ||||||||| ||| ||||||||             |||| |||||||||| ||||||||   ||||| ||| ||||||||||    
T  88646 cccatctgttagcatcaacaaagtgaagggcctcgagtaaggctactgcctccccctccaaaactgtcatatttgcccattgccatttcatttgagcccg 88547  T
Q  197 aataaattgtccacgggagtctctaacacaacacacaaaagatctaacttggttacggttatacaacgcggcatccacattgcatttcgaccaggtctca 296  Q
    ||||||||| || || |||||||||||||||||  |||||| | |||  |||||||||| ||  ||||| |||||||||||||| ||| |||| |||||     
T  88546 aataaattgcccgcgagagtctctaacacaacatgcaaaagttgtaatatggttacggtcatggaacgcagcatccacattgcacttcaaccatgtctcg 88447  T
Q  297 cttggtttctctcaaactgagatattaccttgcactctattctgcctattttgcacaactggtggtgagggatgtttatgaaacctcttgccattgttgt 396  Q
    || |||||||| ||||||| | | || |||||||||||||| |||   | ||| ||||| ||| |||||||||||||||| ||| |||||||||||||||    
T  88446 ctcggtttctcccaaactgtgttgttgccttgcactctattatgctcgtgttgtacaaccggtagtgagggatgtttatg-aacatcttgccattgttgt 88348  T
Q  397 catgcatcta 406  Q
    ||||||||||    
T  88347 catgcatcta 88338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 10 - 403
Target Start/End: Original strand, 12130638 - 12131043
Alignment:
Q  10 ataatactcgaaataatagcgtagaattctaaatcactatgacccaaagaagatagatcttgcactagagtagaagagtcagactcgaaaagaactcgat 109  Q
    |||||||| ||||||||||| ||||||||| |||||| ||| ||| |||| |||||| |||| ||||||||||| |||||||||||||| | ||| ||||    
T  12130638 ataatactagaaataatagcatagaattctgaatcaccatgtcccgaagatgatagagcttggactagagtagatgagtcagactcgaagataacccgat 12130737  T
Q  110 cccatcagttcacatcagcaaagtgaatggcatcgagtaa-------------cccttcaaaactgtcgtatttgcctgctgccaattcgtttgagcccg 196  Q
     |||||  ||  |||||||||||||||  || || |||||             |||| ||| ||| || |||||||  |||| || ||||||||||||||    
T  12130738 tccatctatttgcatcagcaaagtgaagagcctcaagtaaggctactgcctccccctccaacactatcatatttgctcgctgtcatttcgtttgagcccg 12130837  T
Q  197 aataaattgtccacgggagtctctaacacaacacacaaaagatctaacttggttacggttatacaacgcggcatccacattgcatttcgaccaggtctca 296  Q
    ||||| ||| || ||||||||||||||||||||| ||||||||  ||  |||||||||| ||  |||| ||||||||||||||| ||| |||| |||||     
T  12130838 aataatttgcccgcgggagtctctaacacaacacccaaaagatagaatatggttacggtcatggaacggggcatccacattgcacttcaaccacgtctcg 12130937  T
Q  297 cttggtttctctcaaactgagatattaccttgcactctattctgcctattttgcacaactggtggtgagggatgtttatgaaacctcttgccattgttgt 396  Q
    || | |||||| |||| |||| | |||||||||||||| ||   ||  | ||||||||| |||||||| || |||||||| ||||||||||||||||||     
T  12130938 ctcgatttctcccaaattgagttgttaccttgcactctgtttgtcccgtgttgcacaaccggtggtgatggttgtttatg-aacctcttgccattgttgc 12131036  T
Q  397 catgcat 403  Q
    |||||||    
T  12131037 catgcat 12131043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 13 - 337
Target Start/End: Original strand, 34695907 - 34696242
Alignment:
Q  13 atactcgaaataatagcgtagaattctaaatcactatgacccaaagaagatagatcttgcactagagtagaagagtcagactcgaaaagaactcgatccc 112  Q
    ||||| |||| |||||| || |||||| |||||| |||||||  ||| ||||   |||||||||||||||  ||||| |||||||| | ||| || ||||    
T  34695907 atactagaaacaatagcataaaattctgaatcaccatgacccggagacgataacgcttgcactagagtagcggagtcggactcgaagacaacccgttccc 34696006  T
Q  113 atcagttcacatcagcaaagtgaatggcatcgagtaa-------------cccttcaaaactgtcgtatttgcctgctgccaattcgtttgagcccgaat 199  Q
    |||  || |||||||||||||||||||| | ||||||             |||| |||||||||| |||||||| |||||||  ||| ||||||||||||    
T  34696007 atctattgacatcagcaaagtgaatggccttgagtaaggctactgcctccccctccaaaactgtcatatttgcccgctgcca--tcgattgagcccgaat 34696104  T
Q  200 aaattgtccacgggagtctctaacacaacacacaaaagatctaacttggttacggttatacaacgcggcatccacattgcatttcgaccaggtctcactt 299  Q
    |||||| ||||||||||||||||| |||||| |||||||| |||  || ||| ||| ||  || | ||||||||| ||| | ||| |||| | ||| |      
T  34696105 aaattgcccacgggagtctctaacgcaacacgcaaaagatgtaatatgcttatggtcatggaatgtggcatccacgttgtacttcaaccacgactcgcgc 34696204  T
Q  300 ggtttctctcaaactgagatattaccttgcactctatt 337  Q
     ||||||| ||||||||| | |||||||||| ||||||    
T  34696205 agtttctcccaaactgagttgttaccttgcattctatt 34696242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 13 - 337
Target Start/End: Original strand, 34718319 - 34718654
Alignment:
Q  13 atactcgaaataatagcgtagaattctaaatcactatgacccaaagaagatagatcttgcactagagtagaagagtcagactcgaaaagaactcgatccc 112  Q
    ||||| |||| |||||| || |||||| |||||| |||||||  ||| ||||   |||||||||||||||  ||||| |||||||| | ||| || ||||    
T  34718319 atactagaaacaatagcataaaattctgaatcaccatgacccggagacgataacgcttgcactagagtagcggagtcggactcgaagacaacccgttccc 34718418  T
Q  113 atcagttcacatcagcaaagtgaatggcatcgagtaa-------------cccttcaaaactgtcgtatttgcctgctgccaattcgtttgagcccgaat 199  Q
    |||  || |||||||||||||||||||| | ||||||             |||| |||||||||| |||||||| |||||||  ||| ||||||||||||    
T  34718419 atctattgacatcagcaaagtgaatggccttgagtaaggctactgcctccccctccaaaactgtcatatttgcccgctgcca--tcgattgagcccgaat 34718516  T
Q  200 aaattgtccacgggagtctctaacacaacacacaaaagatctaacttggttacggttatacaacgcggcatccacattgcatttcgaccaggtctcactt 299  Q
    |||||| ||||||||||||||||| |||||| |||||||| |||  || ||| ||| ||  || | ||||||||| ||| | ||| |||| | ||| |      
T  34718517 aaattgcccacgggagtctctaacgcaacacgcaaaagatgtaatatgcttatggtcatggaatgtggcatccacgttgtacttcaaccacgactcgcgc 34718616  T
Q  300 ggtttctctcaaactgagatattaccttgcactctatt 337  Q
     ||||||| ||||||||| | |||||||||| ||||||    
T  34718617 agtttctcccaaactgagttgttaccttgcattctatt 34718654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 20 - 149
Target Start/End: Complemental strand, 14827257 - 14827128
Alignment:
Q  20 aaataatagcgtagaattctaaatcactatgacccaaagaagatagatcttgcactagagtagaagagtcagactcgaaaagaactcgatcccatcagtt 119  Q
    |||||||||| |||||||   |||||| |||||||||| | |||||| |||||||||||||||   ||||||| || || | ||||||||| ||||  ||    
T  14827257 aaataatagcatagaatttcgaatcaccatgacccaaacacgatagagcttgcactagagtagctaagtcagattcaaagacaactcgatctcatctatt 14827158  T
Q  120 cacatcagcaaagtgaatggcatcgagtaa 149  Q
    || ||||| |||||||||| ||||||||||    
T  14827157 catatcagtaaagtgaatgacatcgagtaa 14827128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 61 - 341
Target Start/End: Original strand, 44017369 - 44017662
Alignment:
Q  61 gatagatcttgcactagagtagaagagtcagactcgaaaagaactcgatcccatcagttcacatcagcaaagtgaatggcatcgagtaa----------- 149  Q
    |||||| ||||||||| ||||   |||||||||||||| | |||| | || |||  |||||||| ||||| ||||||||||||||||||               
T  44017369 gatagagcttgcactaaagtaacggagtcagactcgaagacaacttggtctcatatgttcacattagcaacgtgaatggcatcgagtaaggttgttgtct 44017468  T
Q  150 --cccttcaaaactgtcgtatttgcctgctgccaattcgtttgagcccgaataaattgtccacgggagtctctaacacaacacacaaaagatctaacttg 247  Q
      |||| |||||||||| |||||||  | || || ||  ||||||||||||||||||| |||||||||||||||||||||||| | |||||| |||  ||    
T  44017469 ccccctccaaaactgtcatatttgcacggtgtcattttatttgagcccgaataaattgcccacgggagtctctaacacaacacgcgaaagatgtaagatg 44017568  T
Q  248 gttacggttatacaacgcggcatccacattgcatttcgaccaggtctcacttggtttctctcaaactgagatattaccttgcactctattctgc 341  Q
    || | | | | | ||||||| || | ||||||| ||| |||| ||||| || || ||||   ||||| || | |||||||||||| ||||||||    
T  44017569 gtcatgatcacagaacgcggaattcgcattgcacttcaaccatgtctcgctcggcttcttcaaaacttagctgttaccttgcactttattctgc 44017662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 10 - 147
Target Start/End: Original strand, 13109869 - 13110006
Alignment:
Q  10 ataatactcgaaataatagcgtagaattctaaatcactatgacccaaagaagatagatcttgcactagagtagaagagtcagactcgaaaagaactcgat 109  Q
    |||||||| |||| |||||| || ||||| ||||||| ||| ||| |||| |||||| ||| |||||||||||||||||| |||||||| | |||    |    
T  13109869 ataatactggaaacaatagcttataattccaaatcaccatggcccgaagacgatagagcttccactagagtagaagagtcggactcgaagacaaccatgt 13109968  T
Q  110 cccatcagttcacatcagcaaagtgaatggcatcgagt 147  Q
    |||||| | || ||||||| ||||||| ||| ||||||    
T  13109969 cccatctgatcgcatcagctaagtgaagggcctcgagt 13110006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 8 - 133
Target Start/End: Complemental strand, 22845725 - 22845600
Alignment:
Q  8 agataatactcgaaataatagcgtagaattctaaatcactatgacccaaagaagatagatcttgcactagagtagaagagtcagactcgaaaagaactcg 107  Q
    |||||||||| |||| |||||| ||||||||| |||||| |||| |   ||| |||||| ||||||||||||||||  |||  |||||||| | ||| ||    
T  22845725 agataatactagaaacaatagcctagaattctgaatcaccatgatctggagacgatagagcttgcactagagtagattagttggactcgaagacaacccg 22845626  T
Q  108 atcccatcagttcacatcagcaaagt 133  Q
     ||||||| |||| ||||||||||||    
T  22845625 gtcccatctgttcgcatcagcaaagt 22845600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 154 - 391
Target Start/End: Original strand, 18345643 - 18345867
Alignment:
Q  154 tcaaaactgtcgtatttgcctgctgccaattcgtttgagcccgaataaattgtccacgggagtctctaacacaacacacaaaagatctaacttggttacg 253  Q
    ||||||||||| |||||| | | | ||| ||||||||||  | ||||||||  |||||| ||||||||||||||||| |||||||  |||  ||||||||    
T  18345643 tcaaaactgtcatatttgtccgttaccatttcgtttgagttcaaataaattacccacggaagtctctaacacaacacgcaaaagaagtaatatggttacg 18345742  T
Q  254 gttatacaacgcggcatccacattgcatttcgaccaggtctcacttggtttctctcaaactgagatattaccttgcactctattctgcctattttgcaca 353  Q
     | ||  ||||  || ||||||||||| ||| |||| |||||  | |||||||  ||||||            ||||||||||||||||  | |||||||    
T  18345743 ctcatggaacgttgcgtccacattgcacttcaaccatgtctcgttcggtttcttccaaact------------tgcactctattctgcccgtgttgcaca 18345830  T
Q  354 actggtggtgagggatgtttatgaaacctcttgccatt 391  Q
    || ||||||||  |||||||||| ||||||||||||||    
T  18345831 accggtggtgaatgatgtttatg-aacctcttgccatt 18345867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 10 - 131
Target Start/End: Original strand, 1417981 - 1418102
Alignment:
Q  10 ataatactcgaaataatagcgtagaattctaaatcactatgacccaaagaagatagatcttgcactagagtagaagagtcagactcgaaaagaactcgat 109  Q
    |||||||| |||| |||||| ||||||||| |||||| ||   ||| |||  ||||| |||| ||||||||||| |||||||||||||| | ||| |  |    
T  1417981 ataatactagaaacaatagcatagaattctgaatcaccatagtccagagacaatagagcttgaactagagtagatgagtcagactcgaagacaacccagt 1418080  T
Q  110 cccatcagttcacatcagcaaa 131  Q
    |||||| |||  ||||||||||    
T  1418081 cccatctgtttgcatcagcaaa 1418102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 150 - 239
Target Start/End: Complemental strand, 26198727 - 26198638
Alignment:
Q  150 cccttcaaaactgtcgtatttgcctgctgccaattcgtttgagcccgaataaattgtccacgggagtctctaacacaacacacaaaagat 239  Q
    |||| |||||||||| ||||||   ||| ||| ||  ||||||| ||||||||||| ||||  |||||||||||||| ||||||||||||    
T  26198727 ccctccaaaactgtcatatttgttcgctaccattttatttgagctcgaataaattgcccacatgagtctctaacacagcacacaaaagat 26198638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 5 - 98
Target Start/End: Complemental strand, 26198874 - 26198781
Alignment:
Q  5 ggtagataatactcgaaataatagcgtagaattctaaatcactatgacccaaagaagatagatcttgcactagagtagaagagtcagactcgaa 98  Q
    |||| |||||||| |||| |||||| |||||||  || |||| |||||| | ||| |||||| |||||||||||||||  ||||| ||||||||    
T  26198874 ggtaaataatactagaaacaatagcatagaatttcaattcaccatgacctagagacgatagagcttgcactagagtagctgagtcggactcgaa 26198781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 108; Significance: 4e-54; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 10 - 404
Target Start/End: Original strand, 42340277 - 42340682
Alignment:
Q  10 ataatactcgaaataatagcgtagaattctaaatcactatgacccaaagaagatagatcttgcactagagtagaagagtcagactcgaaaagaactcgat 109  Q
    |||||| | |||| |||||| ||||||||| |||||| ||| |||  ||| || ||| ||||||||| |||||  ||||| |||||||| | |||||| |    
T  42340277 ataatattagaaacaatagcatagaattctgaatcaccatggcccggagacgacagagcttgcactaaagtagctgagtctgactcgaagacaactcggt 42340376  T
Q  110 cccatcagttcacatcagcaaagtgaatggcatcgagtaa-------------cccttcaaaactgtcgtatttgcctgctgccaattcgtttgagcccg 196  Q
    |||||| ||||||||| |||||||||||| |||||||||              |||| ||| |||||| ||| |||| ||||||| || |||||||||||    
T  42340377 cccatctgttcacatctgcaaagtgaatgacatcgagtagggctattgcctccccctccaacactgtcatatctgcccgctgccattttgtttgagcccg 42340476  T
Q  197 aataaattgtccacgggagtctctaacacaacacacaaaagatctaacttggttacggttatacaacgcggcatccacattgcatttcgaccaggtctca 296  Q
    ||||||||||||||| |||||||||||||||||| |||||||| |||  ||||| | |  ||| ||| |  ||||||||||||| ||| |||| |||||     
T  42340477 aataaattgtccacgagagtctctaacacaacacgcaaaagatgtaagatggttgccgacatagaac-caacatccacattgcacttcaaccacgtctcg 42340575  T
Q  297 cttggtttctctcaaactgagatattaccttgcactctattctgcctattttgcacaactggtggtgagggatgtttatgaaacctcttgccattgttgt 396  Q
    |  |||||||||||||||||| | || ||||  ||||||||||||   | ||||||||| ||||||||||| |||||||| || ||||||||||||||||    
T  42340576 cacggtttctctcaaactgagttgttgccttagactctattctgcacgtgttgcacaaccggtggtgagggctgtttatg-aatctcttgccattgttgt 42340674  T
Q  397 catgcatc 404  Q
    ||||||||    
T  42340675 catgcatc 42340682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 156 - 389
Target Start/End: Complemental strand, 46007330 - 46007097
Alignment:
Q  156 aaaactgtcgtatttgcctgctgccaattcgtttgagcccgaataaattgtccacgggagtctct-aacacaacacacaaaagatctaacttggttacgg 254  Q
    |||| ||||||||||||| ||||||| |||||||||||||||||||||| |||||| |||||||| |||| ||||| |||||||| |||  |||||||      
T  46007330 aaaattgtcgtatttgcccgctgccatttcgtttgagcccgaataaattttccacgagagtctctaaacaaaacacgcaaaagatataagatggttacaa 46007231  T
Q  255 ttatacaacgcggcatccacattgcatttcgaccaggtctcacttggtttctctcaaactgagatattaccttgcactctattctgcctattttgcacaa 354  Q
    | ||  ||| |||||||||||||||| ||| |||| ||||| ||| |||| || ||||||||| | ||| | |||||| |||| | ||| |  |||||||    
T  46007230 taatggaacacggcatccacattgcacttcaaccacgtctcgctttgtttttcccaaactgagttgttatcctgcactttattttacctgtgctgcacaa 46007131  T
Q  355 ctggtggtgagggatgtttatgaaacctcttgcca 389  Q
    | ||||||||||| ||||||| |||||| ||||||    
T  46007130 ccggtggtgagggctgtttat-aaacctattgcca 46007097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 10 - 378
Target Start/End: Complemental strand, 55199698 - 55199317
Alignment:
Q  10 ataatactcgaaataatagcgtagaattctaaatcactatgacccaaagaagatagatcttgcactagagtagaagagtcagactcgaaaagaactcgat 109  Q
    |||||||| |||| |||||| || |||||  |||||| |||||||  ||| |||||  ||||||| |||||||  ||||| |||| ||| | ||| || |    
T  55199698 ataatactagaaacaatagcataaaattccgaatcaccatgacccgtagacgatagcgcttgcaccagagtagctgagtcggacttgaagacaacccggt 55199599  T
Q  110 cccatcagttcacatcagcaaagtgaatggcatcgagtaa-------------cccttcaaaactgtcgtatttgcctgctgccaattcgtttgagcccg 196  Q
    |||||| |||  || || ||||||||||||||||||||||             |||| |||||||||| |||||  | |||| || ||||||||||||||    
T  55199598 cccatctgtttccaacaacaaagtgaatggcatcgagtaaggcaactgcctccccctccaaaactgtcatatttatcagctgtcatttcgtttgagcccg 55199499  T
Q  197 aataaattgtccacgggagtctctaacacaacacacaaaagatctaacttggttacggttatacaacgcggcatccacattgcatttcgaccaggtctca 296  Q
    ||| ||||| |||||||||||||||||||||||| | |||||| |||  |  | ||||| ||  |||| |||||||||||||||  || ||||  |||||    
T  55199498 aatgaattgcccacgggagtctctaacacaacacgcgaaagatgtaatatattgacggtcatgaaacgtggcatccacattgcacgtcaaccacatctca 55199399  T
Q  297 cttggtttctctcaaactgagatattaccttgcactctattctgcctattttgcacaactggtggtgagggatgtttatgaa 378  Q
    |  |||||||| ||||||||| | ||| |||||||| |||||||| | | ||||||||  | || |||||| ||||||||||    
T  55199398 cgcggtttctcccaaactgagttgttagcttgcactttattctgcatgtgttgcacaatcgatgatgagggctgtttatgaa 55199317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 11 - 280
Target Start/End: Complemental strand, 53497218 - 53496936
Alignment:
Q  11 taatactcgaaataatagcgtagaattctaaatcactatgacccaaagaagatagatcttgcactagagtagaagagtcagactcgaaaagaactcgatc 110  Q
    ||||||| |||| |||||| ||||||||  |||||| ||| |||  ||| |||||| ||||||| |||||||| ||||| |||||||| | ||| || ||    
T  53497218 taatactagaaacaatagcatagaattccgaatcaccatggcccggagacgatagagcttgcacaagagtagatgagtcggactcgaagacaacccggtc 53497119  T
Q  111 ccatcagttcacatcagcaaagtgaatggcatcgagtaa-------------cccttcaaaactgtcgtatttgcctgctgccaattcgtttgagcccga 197  Q
    ||||| |||  ||||||||||||||| ||| || |||||             ||||  |||||||||  ||||| | |||| || || ||||||||||||    
T  53497118 ccatctgttagcatcagcaaagtgaagggcctctagtaaggctactgcctccccctcaaaaactgtcacatttgtccgctgtcattttgtttgagcccga 53497019  T
Q  198 ataaattgtccacgggagtctctaacacaacacacaaaagatctaacttggttacggttatacaacgcggcatccacattgca 280  Q
    |||||||| ||||  |||||||||||||||||| |||||||| |||  |||||||||| ||  |||||||| |||||||||||    
T  53497018 ataaattgcccacaagagtctctaacacaacacgcaaaagatgtaatatggttacggtcatggaacgcggcgtccacattgca 53496936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 31 - 149
Target Start/End: Original strand, 647184 - 647302
Alignment:
Q  31 tagaattctaaatcactatgacccaaagaagatagatcttgcactagagtagaagagtcagactcgaaaagaactcgatcccatcagttcacatcagcaa 130  Q
    ||||||||  |||||| ||| |||  ||| |||||| |||||||||||||||| |||||||||||||| | |||||| || |||| ||||||||||||||    
T  647184 tagaattccgaatcaccatggcccggagacgatagagcttgcactagagtagatgagtcagactcgaagataactcggtcacatctgttcacatcagcaa 647283  T
Q  131 agtgaatggcatcgagtaa 149  Q
    |||||||| ||||||||||    
T  647284 agtgaatgacatcgagtaa 647302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 150 - 294
Target Start/End: Complemental strand, 2615527 - 2615383
Alignment:
Q  150 cccttcaaaactgtcgtatttgcctgctgccaattcgtttgagcccgaataaattgtccacgggagtctctaacacaacacacaaaagatctaacttggt 249  Q
    |||| ||||||| || |||||||| ||||||||||||||||||||||||| ||||| ||||   || |||||||||||| ||||||| || |||  ||||    
T  2615527 ccctccaaaactatcatatttgcccgctgccaattcgtttgagcccgaatgaattgcccacaaaagcctctaacacaacgcacaaaaaatgtaatatggt 2615428  T
Q  250 tacggttatacaacgcggcatccacattgcatttcgaccaggtct 294  Q
    || | | ||  ||||||| |||||||||||||||| |||| ||||    
T  2615427 tatgatcatgaaacgcggtatccacattgcatttcaaccacgtct 2615383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 183 - 278
Target Start/End: Complemental strand, 48227414 - 48227319
Alignment:
Q  183 ttcgtttgagcccgaataaattgtccacgggagtctctaacacaacacacaaaagatctaacttggttacggttatacaacgcggcatccacattg 278  Q
    ||||||| ||||||||||||||| || || |||||||||||||||||| |||||||| |||| |||||||||| ||  || |||||||||||||||    
T  48227414 ttcgtttaagcccgaataaattgcccgcgagagtctctaacacaacacgcaaaagatgtaacatggttacggtaatgaaatgcggcatccacattg 48227319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 104 - 271
Target Start/End: Original strand, 647305 - 647485
Alignment:
Q  104 ctcgatcccatcagttcacatcagcaaagtgaatggcatcgagtaa-------------cccttcaaaactgtcgtatttgcctgctgccaattcgtttg 190  Q
    |||| ||||||| |||||||||||||||||||||| ||||||||||             |||| || ||||||| |||| ||| ||||||| ||||||||    
T  647305 ctcggtcccatctgttcacatcagcaaagtgaatgacatcgagtaaggctgctgcctccccctccataactgtcatattagcccgctgccatttcgtttg 647404  T
Q  191 agcccgaataaattgtccacgggagtctctaacacaacacacaaaagatctaacttggttacggttatacaacgcggcatc 271  Q
    |||||| | |||||| | |  | ||||||||||||||||| |||||||| |||  |||||||| | ||  |||||||||||    
T  647405 agcccggaaaaattgcctagagaagtctctaacacaacacgcaaaagatgtaatatggttacgctcatggaacgcggcatc 647485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 10 - 145
Target Start/End: Complemental strand, 24176957 - 24176820
Alignment:
Q  10 ataatactcgaaataatagcgtagaattctaaatcactatgacccaaagaagatagatcttgcactagagtagaagagtcagactcgaaaagaactcgat 109  Q
    |||||||| || | |||||| ||||||||  |||||| |||||||| ||| |||||| |||||||||||||||  | |||||||||||| | ||| | ||    
T  24176957 ataatactagatacaatagcttagaattccgaatcaccatgacccagagacgatagagcttgcactagagtagttgtgtcagactcgaagacaacccaat 24176858  T
Q  110 cccatcagttcacatcagcaaa--gtgaatggcatcga 145  Q
    | |||| ||||| |||| ||||  ||||||| ||||||    
T  24176857 ctcatctgttcaaatcaacaaattgtgaatgacatcga 24176820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 62 - 149
Target Start/End: Complemental strand, 2121216 - 2121129
Alignment:
Q  62 atagatcttgcactagagtagaagagtcagactcgaaaagaactcgatcccatcagttcacatcagcaaagtgaatggcatcgagtaa 149  Q
    ||||| |||||| ||||||||   |||| ||||| |||| ||| ||||||||||  |||| |||||||||||||||| ||||||||||    
T  2121216 atagagcttgcattagagtagttaagtcggactcaaaaacaacacgatcccatctattcatatcagcaaagtgaatgacatcgagtaa 2121129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 150 - 253
Target Start/End: Original strand, 27941147 - 27941250
Alignment:
Q  150 cccttcaaaactgtcgtatttgcctgctgccaattcgtttgagcccgaataaattgtccacgggagtctctaacacaacacacaaaagatctaacttggt 249  Q
    |||| ||||||| || |||||| | ||||||| || ||||||| ||||||||||||||| || || ||||||| ||||||| ||||| || |||  ||||    
T  27941147 ccctccaaaactatcatatttgtccgctgccattttgtttgagtccgaataaattgtcctcgagaatctctaatacaacacgcaaaaaatataatatggt 27941246  T
Q  250 tacg 253  Q
    ||||    
T  27941247 tacg 27941250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 149
Target Start/End: Original strand, 11020180 - 11020319
Alignment:
Q  10 ataatactcgaaataatagcgtagaattctaaatcactatgacccaaagaagatagatcttgcactagagtagaagagtcagactcgaaaagaactcgat 109  Q
    |||||||| |||| ||||||  |||||||| |||||| ||| |||  ||| |||||| ||| |||| ||||||   ||||||||||||| | ||| |  |    
T  11020180 ataatactagaaacaatagcacagaattctgaatcaccatggcccggagacgatagaccttacactggagtagttaagtcagactcgaagacaacccagt 11020279  T
Q  110 cccatcagttcacatcagcaaagtgaatggcatcgagtaa 149  Q
     ||||  |||| |||||||||||| ||| |||||||||||    
T  11020280 tccatttgttcccatcagcaaagtaaatagcatcgagtaa 11020319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 344 - 415
Target Start/End: Original strand, 27747787 - 27747857
Alignment:
Q  344 attttgcacaactggtggtgagggatgtttatgaaacctcttgccattgttgtcatgcatctaatgatgtcc 415  Q
    |||||||||||| ||||||||| | | |||||| ||||||||| |||||||| |||||||||| || |||||    
T  27747787 attttgcacaaccggtggtgagtgctttttatg-aacctcttgtcattgttgccatgcatctagtgttgtcc 27747857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 239
Target Start/End: Original strand, 36310729 - 36310782
Alignment:
Q  186 gtttgagcccgaataaattgtccacgggagtctctaacacaacacacaaaagat 239  Q
    |||||||| ||||||||||||||||  |  ||||||||||||||| ||||||||    
T  36310729 gtttgagctcgaataaattgtccacatgcttctctaacacaacacgcaaaagat 36310782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 103; Significance: 4e-51; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 61 - 406
Target Start/End: Original strand, 478107 - 478464
Alignment:
Q  61 gatagatcttgcactagagtagaagagtcagactcgaaaagaactcgatcccatcagttcacatcagcaaagtgaatggcatcgagtaa----------- 149  Q
    |||||| ||||||||||||||| ||||||||| ||||| | ||| || |||||||  ||||||| ||||||||||||||||||||||||               
T  478107 gatagagcttgcactagagtagtagagtcagattcgaagataacccggtcccatctattcacattagcaaagtgaatggcatcgagtaaggctactgcct 478206  T
Q  150 --cccttcaaaactgtcgtatttgcctgctgccaattcgtttgagcccgaataaattgtccacgggagtctctaacacaacacacaaaagatctaacttg 247  Q
      |||| |||||||||| |||||||| | ||||| || ||||||||||| |||||||| ||| || | |||||||||||||||||||||||| | |  ||    
T  478207 ccccctccaaaactgtcatatttgcccgttgccattttgtttgagcccggataaattgaccatggaaatctctaacacaacacacaaaagatgttagatg 478306  T
Q  248 gttacggttatacaacgcggcatccacattgcatttcgaccaggtctcacttggtttctctcaaactgagatattaccttgcactctattctgcctattt 347  Q
    |||  ||| ||  ||||  ||||||||||| || ||| ||||  |||| ||||||||||| |||| |||||| |||||||| |||||||| ||||| | |    
T  478307 gttgtggtcatggaacgttgcatccacattacacttcaaccacatctcgcttggtttctcccaaattgagatgttaccttggactctattttgcctgtgt 478406  T
Q  348 tgcacaactggtggtgagggatgtttatgaaacctcttgccattgttgtcatgcatcta 406  Q
    ||||||||   |||||| ||||||||||| ||||||||||||||| || ||||||||||    
T  478407 tgcacaaccactggtgatggatgtttatg-aacctcttgccattgctgccatgcatcta 478464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 68 - 406
Target Start/End: Original strand, 8451181 - 8451531
Alignment:
Q  68 cttgcactagagtagaagagtcagactcgaaaagaactcgatcccatcagttcacatcagcaaagtgaatggcatcgagtaa-------------ccctt 154  Q
    ||||||||| |||||| |||||||||||||| | ||| || ||||||| |||||||||||| |||||||||| |||||||||             ||||     
T  8451181 cttgcactaaagtagatgagtcagactcgaagacaacccggtcccatccgttcacatcagcgaagtgaatggaatcgagtaaagctactgcctccccctc 8451280  T
Q  155 caaaactgtcgtatttgcctgctgccaattcgtttgagcccgaataaattgtccacgggagtctctaacacaacacacaaaagatctaacttggttacgg 254  Q
    ||| |||||| |||||||| ||| ||  || |||||||||||||||||||||||||  |||||||||||||||||  |||||||| |||  |||||||||    
T  8451281 caacactgtcatatttgcccgcttcctttttgtttgagcccgaataaattgtccacaagagtctctaacacaacatccaaaagatgtaaaatggttacgg 8451380  T
Q  255 ttatacaacgcggcatccacattgcatttcgaccaggtctcacttggtttctctcaaactgagatattaccttgcactctattctgcctattttgcacaa 354  Q
    | ||  ||||||||||||||||| || ||| |||| ||||| |  |||||||| |||| |||  ||| ||||||||||||||| |||   | ||||||||    
T  8451381 tcatggaacgcggcatccacattacacttcaaccacgtctcgcacggtttctcccaaattgaactatgaccttgcactctattttgctggtgttgcacaa 8451480  T
Q  355 ctggtggtgagggatgtttatgaaacctcttgccattgttgtcatgcatcta 406  Q
    |  ||||||| || |||||||| |||||||||||||||||| ||||| ||||    
T  8451481 cctgtggtgatggctgtttatg-aacctcttgccattgttgccatgcctcta 8451531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 10 - 404
Target Start/End: Complemental strand, 7127410 - 7127004
Alignment:
Q  10 ataatactcgaaataatagcgtagaattctaaatcactatgacccaaagaagatagatcttgcactagagtagaagagtcagactcgaaaagaactcgat 109  Q
    |||||||| |||| |||| | |||||| ||||||||| ||| |||  ||| || ||| ||||||||| ||||| | |||||||||||||   ||| || |    
T  7127410 ataatacttgaaacaataacatagaatactaaatcaccatggcccggagacgaaagagcttgcactaaagtagcatagtcagactcgaaggcaacccggt 7127311  T
Q  110 cccatcagttcacatcagcaaagtgaatggcatcgagtaa-------------cccttcaaaactgtcgtatttgcctgctgccaattcgtttgagcccg 196  Q
    |||||| ||||||||||||||||||||| |||||||||||             |||| ||||||| || |||||||| | | ||| ||| |||| || ||    
T  7127310 cccatctgttcacatcagcaaagtgaatagcatcgagtaaggctactacctccccctccaaaactttcatatttgcccgtttccatttcatttgtgcacg 7127211  T
Q  197 aataaattgtccacgggagtctctaacacaacacacaaaagatctaacttggttacggttatacaacgcggcatccacattgcatttcgaccaggtctca 296  Q
    ||||||||  || || |||||||||||||||||  || | ||| |||   ||||||| | ||  ||||||||||||||||| || ||| |||| |||||     
T  7127210 aataaatttcccccgagagtctctaacacaacatgcagaggatgtaagacggttacgttcatggaacgcggcatccacattccacttcaaccatgtctcg 7127111  T
Q  297 cttggtttctctcaaactgagatattaccttgcactctattctgcctattttgcacaactggtggtgagggatgtttatgaaacctcttgccattgttgt 396  Q
    || || ||||| |||||| || | ||||||||| | |||||||| || | ||||||||| ||| |||||||||||||||| |||||| |||||||| ||     
T  7127110 ctcggcttctcccaaactaagttgttaccttgccccctattctggctgtgttgcacaaccggtagtgagggatgtttatg-aacctcatgccattgctgc 7127012  T
Q  397 catgcatc 404  Q
    ||||||||    
T  7127011 catgcatc 7127004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 11 - 403
Target Start/End: Complemental strand, 23854118 - 23853726
Alignment:
Q  11 taatactcgaaataatagcgtagaattctaaatcactatgacccaaagaagatagatcttgcactagagtagaagagtcagactcgaaaagaactcgatc 110  Q
    ||||||| |||| |||||| ||||||||| |||||| ||| |||  ||| |||||| ||||||||||||| || ||||| |||||||| | |||||  ||    
T  23854118 taatactagaaacaatagcatagaattctgaatcaccatggcccggagacgatagagcttgcactagagttgatgagtcggactcgaagacaactcagtc 23854019  T
Q  111 ccatcagttcacatcagcaaagtgaatggcatcgagtaa-------------cccttcaaaactgtcgtatttgcctgctgccaattcgtttgagcccga 197  Q
     |||| |||  ||||| ||||||||||||| || |||||             |||| |||||||||| |||||  | |||| || ||||||||| |||||    
T  23854018 tcatctgttagcatcaacaaagtgaatggcctcaagtaaggctactgcctcaccctccaaaactgtcatatttttccgctgtcatttcgtttgaacccga 23853919  T
Q  198 ataaattgtccacgggagtctctaacacaacacacaaaagatctaacttggttacggttatacaacgcggcatccacattgcatttcgaccaggtctcac 297  Q
    |||||||| |||||||||||||||||| ||||| |||||||| |||  | |||||||| ||  |||||||| ||||||| ||| ||| |||| |||||      
T  23853918 ataaattgcccacgggagtctctaacataacacgcaaaagatgtaatatagttacggtcatggaacgcggcgtccacatcgcacttcaaccacgtctcgt 23853819  T
Q  298 ttggtttctctcaaactgagatattaccttgcactctattctgcctattttgcacaactggtggtgagggatgtttatgaaacctcttgccattgttgtc 397  Q
    | |||||||| ||||            ||||||||||||| ||||| | |||||||||  |||||||   ||||||||| ||||||||||||||||||||    
T  23853818 tcggtttctcccaaa------------cttgcactctattatgcctgtgttgcacaacctgtggtgaataatgtttatg-aacctcttgccattgttgtc 23853732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 261 - 406
Target Start/End: Original strand, 40588979 - 40589123
Alignment:
Q  261 aacgcggcatccacattgcatttcgaccaggtctcacttggtttctctcaaactgagatattaccttgcactctattctgcctattttgcacaactggtg 360  Q
    |||||||||||||| ||||| ||| |||| |||||||| |||||||| ||||||||| | |||||||||||||| || ||||  | ||||||||| ||||    
T  40588979 aacgcggcatccacgttgcacttcaaccacgtctcactcggtttctcccaaactgagttgttaccttgcactctgttatgcccgtgttgcacaaccggtg 40589078  T
Q  361 gtgagggatgtttatgaaacctcttgccattgttgtcatgcatcta 406  Q
    ||||||| |||||||| |||||||||||||||||| ||||||||||    
T  40589079 gtgagggctgtttatg-aacctcttgccattgttgccatgcatcta 40589123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 150 - 294
Target Start/End: Complemental strand, 13415057 - 13414913
Alignment:
Q  150 cccttcaaaactgtcgtatttgcctgctgccaattcgtttgagcccgaataaattgtccacgggagtctctaacacaacacacaaaagatctaacttggt 249  Q
    |||| |||||||||| |||||| | ||||||| ||||||||||||||||||||||| || ||  ||||||||| | |||||||||||| | |||  ||||    
T  13415057 ccctccaaaactgtcatatttgtccgctgccatttcgtttgagcccgaataaattgcccgcgaaagtctctaaaaaaacacacaaaagttgtaatatggt 13414958  T
Q  250 tacggttatacaacgcggcatccacattgcatttcgaccaggtct 294  Q
    |||| | ||  ||| || ||||||||||||| ||| |||| ||||    
T  13414957 tacgttcatggaacacgacatccacattgcacttcaaccacgtct 13414913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 10 - 149
Target Start/End: Original strand, 185591 - 185730
Alignment:
Q  10 ataatactcgaaataatagcgtagaattctaaatcactatgacccaaagaagatagatcttgcactagagtagaagagtcagactcgaaaagaactcgat 109  Q
    |||||||| |||| |||||| ||||||||| |||||| |||  ||  ||| || ||| ||||||||| ||||| ||||||||||||| | | ||| || |    
T  185591 ataatactagaaacaatagcatagaattctgaatcaccatggtccggagacgaaagagcttgcactaaagtagcagagtcagactcgtagacaacccggt 185690  T
Q  110 cccatcagttcacatcagcaaagtgaatggcatcgagtaa 149  Q
     |||||  ||||||||| |||||||||| | |||||||||    
T  185691 tccatctattcacatcaacaaagtgaatagtatcgagtaa 185730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 10 - 236
Target Start/End: Complemental strand, 37712260 - 37712027
Alignment:
Q  10 ataatactcgaaataatagcgtagaattctaaatcactatgacccaaagaagatagatcttgcactagagtagaagagtcagactcgaaaagaactcgat 109  Q
    |||||||| |||| |||||| ||| ||||| |||||| ||| || || ||  ||||| ||| ||||||||||| || |||| ||| ||| | |||  |||    
T  37712260 ataatactagaaacaatagcatagtattctgaatcaccatgtccgaa-gacaatagagcttacactagagtagcagggtcaaactagaagataacctgat 37712162  T
Q  110 cccatcagttcacatcagcaaagtgaatggcat-----cgagtaac---ccttcaaaactgtcgtatttgcctgctgccaattcgtttgagcccgaataa 201  Q
    | |||| |||||||||| |||||||||||||||     | | || |   |||||||||||||| ||||| || |||| || ||||||| ||| | |||||    
T  37712161 ctcatctgttcacatcaacaaagtgaatggcattaaagctactacctccccttcaaaactgtcatattttcccgctgtcatttcgttttagctcaaataa 37712062  T
Q  202 attgtccacgggagtctctaacacaacacacaaaa 236  Q
    |||| ||||  |||| ||||||||||||| |||||    
T  37712061 attgcccacacgagtttctaacacaacacgcaaaa 37712027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 150 - 205
Target Start/End: Original strand, 40588883 - 40588938
Alignment:
Q  150 cccttcaaaactgtcgtatttgcctgctgccaattcgtttgagcccgaataaattg 205  Q
    |||| |||||||||  |||||||| ||||||| |||||||||||||||||||||||    
T  40588883 ccctccaaaactgttatatttgcccgctgccatttcgtttgagcccgaataaattg 40588938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 145
Target Start/End: Original strand, 3606739 - 3606874
Alignment:
Q  10 ataatactcgaaataatagcgtagaattctaaatcactatgacccaaagaagatagatcttgcactagagtagaagagtcagactcgaaaagaactcgat 109  Q
    |||||||| |||| |||||| |||||||| || |||| |||||||  ||| ||||||  ||| |||| ||| |  ||||| |||| ||||| |||| | |    
T  3606739 ataatactagaaacaatagcatagaattccaagtcaccatgaccctgagacgatagagtttgtactaaagttgttgagtcggacttgaaaacaacttggt 3606838  T
Q  110 cccatcagttcacatcagcaaagtgaatggcatcga 145  Q
     ||||| ||||||||||  ||| |||||||||||||    
T  3606839 tccatctgttcacatcaagaaattgaatggcatcga 3606874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 149
Target Start/End: Complemental strand, 13415152 - 13415071
Alignment:
Q  68 cttgcactagagtagaagagtcagactcgaaaagaactcgatcccatcagttcacatcagcaaagtgaatggcatcgagtaa 149  Q
    ||||||||||||||||||| || ||||| || | |||||||||||||| |||  |||| |||||  ||| ||| ||||||||    
T  13415152 cttgcactagagtagaagaatcggactcaaagacaactcgatcccatctgtttgcatccgcaaaaggaagggcctcgagtaa 13415071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0446 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0446
Description:

Target: scaffold0446; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 68 - 342
Target Start/End: Complemental strand, 315 - 28
Alignment:
Q  68 cttgcactagagtagaagagtcagactcgaaaagaactcgatcccatcagttcacatcagcaaagtgaatggcatcgagtaa-------------ccctt 154  Q
    |||||||||||||||  ||||| |||||||| | ||| || ||||||   ||| || |||||||||||||||||||||||||             ||||     
T  315 cttgcactagagtagctgagtcggactcgaagacaacccggtcccatatattcccaacagcaaagtgaatggcatcgagtaaggcaactgcctccccctc 216  T
Q  155 caaaactgtcgtatttgcctgctgccaattcgtttgagcccgaataaattgtccacgggagtctctaacacaacacacaaaagatctaacttggttacgg 254  Q
    | |||||||| |||||||  | || || ||||||||||||||||| ||||| |||||||||||||||| ||||||| | ||||||   |  || | ||||    
T  215 ccaaactgtcatatttgctcgttgtcatttcgtttgagcccgaatgaattgcccacgggagtctctaaaacaacacgcgaaagatngtatatgttgacgg 116  T
Q  255 ttatacaacgcggcatccacattgcatttcgaccaggtctcacttggtttctctcaaactgagatattaccttgcactctattctgcc 342  Q
    | ||  ||| || ||||||||||||| ||| |||| |||||||   ||||||| ||||||||| | ||| |||||| ||| |||||||    
T  115 tcatgaaacacgacatccacattgcacttcaaccacgtctcacacagtttctcccaaactgagttgttagcttgcagtctgttctgcc 28  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0922 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 10 - 131
Target Start/End: Original strand, 264 - 385
Alignment:
Q  10 ataatactcgaaataatagcgtagaattctaaatcactatgacccaaagaagatagatcttgcactagagtagaagagtcagactcgaaaagaactcgat 109  Q
    |||||||| |||| |||||| ||||||||| ||| || ||||||   ||| |||||| |||||||||||||||| ||||| |||||||||| || | |||    
T  264 ataatactagaaacaatagcatagaattctgaattaccatgacctggagatgatagagcttgcactagagtagatgagtcggactcgaaaataattggat 363  T
Q  110 cccatcagttcacatcagcaaa 131  Q
    |||||  |||  ||||||||||    
T  364 cccatttgtttgcatcagcaaa 385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University