View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7167_high_8 (Length: 242)
Name: NF7167_high_8
Description: NF7167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7167_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 12 - 229
Target Start/End: Complemental strand, 37207798 - 37207581
Alignment:
| Q |
12 |
atggacatcatgccatggcatacgtggatatttttggcgatcaaattcatctctcatggtgtcttcccatgagtttggttcagactctctatacacgaat |
111 |
Q |
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| T |
37207798 |
atggacatcatgccatggcatacgtggatatttttggcgatcaaattcatctctcatggtgtcttcccatgagtttggttcagactctctatacacgaat |
37207699 |
T |
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| Q |
112 |
aaaaattccacaaatcaagtctccaaaaacatgaaggaaaaaaggtgcaccaagccaccaatctatggatttcattcctattcctatggatttcattcac |
211 |
Q |
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| T |
37207698 |
aaaaattccacaaatcaagtctccaaaaacatgaaggaaaaaaggtgcaccaagccaccatcctatggatttcattcctattcctatggatttcattcac |
37207599 |
T |
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| Q |
212 |
tcataagcaacgatgatg |
229 |
Q |
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|||||||||||||||||| |
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| T |
37207598 |
tcataagcaacgatgatg |
37207581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 181 - 215
Target Start/End: Complemental strand, 37207577 - 37207543
Alignment:
| Q |
181 |
tttcattcctattcctatggatttcattcactcat |
215 |
Q |
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| T |
37207577 |
tttcattcctattcctatggatttcattcactcat |
37207543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 95
Target Start/End: Original strand, 13749550 - 13749629
Alignment:
| Q |
16 |
acatcatgccatggcatacgtggatatttttggcgatcaaattcatctctcatggtgtcttcccatgagtttggttcaga |
95 |
Q |
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||||||||||| |||||||| |||||||||| || || ||||||||| |||| || ||||||||||| ||||||||||| |
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| T |
13749550 |
acatcatgccaaggcatacgaggatatttttcacgttccaattcatctttcattgtatcttcccatgaatttggttcaga |
13749629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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