View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7167_low_1 (Length: 638)

Name: NF7167_low_1
Description: NF7167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7167_low_1
NF7167_low_1
[»] chr2 (9 HSPs)
chr2 (18-625)||(13067397-13068000)
chr2 (200-594)||(25714813-25715197)
chr2 (195-440)||(25857535-25857770)
chr2 (243-373)||(25714615-25714739)
chr2 (19-130)||(25859194-25859305)
chr2 (551-625)||(4009627-4009701)
chr2 (551-625)||(6565692-6565766)
chr2 (549-625)||(12406592-12406668)
chr2 (521-561)||(25857417-25857457)
[»] chr3 (2 HSPs)
chr3 (18-444)||(30179033-30179457)
chr3 (254-406)||(4649913-4650060)
[»] chr1 (3 HSPs)
chr1 (238-437)||(18424644-18424839)
chr1 (521-625)||(18424436-18424540)
chr1 (551-593)||(32637964-32638006)
[»] chr4 (1 HSPs)
chr4 (20-183)||(38431809-38431972)
[»] scaffold0078 (3 HSPs)
scaffold0078 (238-505)||(13276-13539)
scaffold0078 (19-189)||(12980-13150)
scaffold0078 (521-625)||(13562-13666)
[»] chr6 (3 HSPs)
chr6 (243-437)||(16690594-16690785)
chr6 (551-625)||(16663029-16663103)
chr6 (521-625)||(16690873-16690983)
[»] chr8 (3 HSPs)
chr8 (315-439)||(32116026-32116146)
chr8 (551-625)||(8908451-8908525)
chr8 (550-594)||(15962540-15962584)
[»] chr7 (2 HSPs)
chr7 (553-625)||(24040339-24040411)
chr7 (551-625)||(32185156-32185230)


Alignment Details
Target: chr2 (Bit Score: 468; Significance: 0; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 18 - 625
Target Start/End: Complemental strand, 13068000 - 13067397
Alignment:
Q  18 atattatgtgtgaaaattagagctcagtgttaatatgatcactatgttaatgatcaacattattttggagctgaaacataatatacatatgaaaactata 117  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  13068000 atattatgtgtgaaaattagagttcagtgttaatatgatcactatgttaatgatcaatactattttggagctgaaacataatatacatatgaaaactata 13067901  T
Q  118 gcttagtgttaatagattcactatgtcgataatcaacactattttagagctgagacaatgtggttttccgtgataacttatctggctttgaggcattgga 217  Q
    ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  13067900 gctcagtgttaatagaatcactatgtcgataatcaacactattttagagctgagacaatgtggttttccgtgataacttctctggctttgaggcattgga 13067801  T
Q  218 gagaaattgaggattgacgtacaaagaaaatgatagtatggttgatgatcacgttgacatatcatcacttcttgcaacactctacacaaatgattagtcg 317  Q
    ||||||||||||| | ||    |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  13067800 gagaaattgaggactaac----aaagacgatgatagtatggttgatgatcacgttgacatatcatcacttcttgcaacactctgcacaaatgattcgtcg 13067705  T
Q  318 acgaaattggtggtatttgttaccgcatggaaggtgttgtatcaataaggatataactacctgcatgattcgatatcatttaattttttgttgggtggag 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  13067704 acgaaattggtggtatttgttaccgcatggaaggtgttgtatcaataaggatataactaccgccatgattcgatatcatttaattttttgttgggtggag 13067605  T
Q  418 tcttaattaaatgttgcatcttgaga----ttagttgtcacgttagaaagttaatttgttattagtccgagggtcgttttcaaaaatgttttcttcaaat 513  Q
    ||||||| ||||||||||||||||||    ||||||||||||||||||||    ||||||||||||||||| ||||||||| |||||| |||||||||||    
T  13067604 tcttaatcaaatgttgcatcttgagatcatttagttgtcacgttagaaag----tttgttattagtccgagagtcgttttcgaaaatgctttcttcaaat 13067509  T
Q  514 nnnnnnntacacaattgattttgcccaaaagggaggatgttagaatttcttttaatattatgtgggctacaatcaattgtaaattttagctttaataaaa 613  Q
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13067508 aaaaaaatacacaattgattttgcccaaaagggaggatgttagaatttcttttaatattatgtgggctacaatcaattgtaaattttagctttaataaaa 13067409  T
Q  614 acggattgatgt 625  Q
    ||||||||||||    
T  13067408 acggattgatgt 13067397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 200 - 594
Target Start/End: Original strand, 25714813 - 25715197
Alignment:
Q  200 tggctttgaggcattggagagaaattgaggattgacgtacaaagaaaatgatagtatggttgatgatcacgttgacatatcatcacttcttgcaacactc 299  Q
    ||||||||||||||| || |||||||||||| |||     || ||||||||||| ||||||||||||||| ||||||||||||   ||||||| |||||     
T  25714813 tggctttgaggcatttgaaagaaattgaggactgat----aatgaaaatgatagcatggttgatgatcacattgacatatcat---ttcttgctacacta 25714905  T
Q  300 tacacaaatgattagtcgacgaaattggtggtatttgttaccgcatggaaggtgttgtatcaataaggatataactacctgcatgattcgatatcattta 399  Q
    ||||||||||| ||||||||| |||||||  ||||||  |||  ||||||| ||||||||| |||||||||||||||    |||||||| ||||||||||    
T  25714906 tacacaaatgactagtcgacggaattggttatatttgcaacc--atggaagatgttgtatctataaggatataactattgccatgattcaatatcattta 25715003  T
Q  400 attttttgttgggtggagtcttaattaaatgttgcatcttgaga----ttagttgtcacgttagaaagttaatttgttattagtccgagggtcgttttca 495  Q
    |||||||||||| || |||||||||||| |||||||||||| ||    | ||| | |||||||| |||    |||||||| | ||  || |||||||||     
T  25715004 attttttgttggatgaagtcttaattaagtgttgcatcttgggatcattcagtggccacgttaggaag----tttgttatcaatctaagagtcgttttct 25715099  T
Q  496 aaaatgttttcttcaaatnnnnnnntacacaattgattttgcccaaaagggaggatgttagaatttcttttaatattatgtgggctacaatcaattgta 594  Q
    ||||| ||||||||||||       ||||||||||||| |||||||  ||||| |||| | ||||| || ||||||| |||||| |  |||||||||||    
T  25715100 aaaatattttcttcaaat-taaaaatacacaattgattatgcccaagtgggagaatgtcaaaatttattctaatattttgtgggatgtaatcaattgta 25715197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 195 - 440
Target Start/End: Complemental strand, 25857770 - 25857535
Alignment:
Q  195 ttatctggctttgaggcattggagagaaattgaggattgacgtacaaagaaaatgatagtatggttgatgatcacgttgacatatcatcacttcttgcaa 294  Q
    |||||||||||| ||||||| |||||||||||||||  |||    ||  ||||||||||||||||||||||||||||||||||||| |   ||||||| |    
T  25857770 ttatctggctttaaggcatttgagagaaattgaggaccgac----aattaaaatgatagtatggttgatgatcacgttgacatatcgt---ttcttgcta 25857678  T
Q  295 cactctacacaaatgattagtcgacgaaattggtggtatttgttaccgcatggaaggtgttgtatcaataaggatataactacctgcatgattcgatatc 394  Q
    ||| ||||||||||||  |||||||| |||||||| ||||||  |||  |||||||||||||||||||||||||||||| ||||  |||||||| |||||    
T  25857677 cacactacacaaatgacaagtcgacggaattggtgatatttggaacc--atggaaggtgttgtatcaataaggatataattaccgccatgattcaatatc 25857580  T
Q  395 atttaattttttgttgggtggagtcttaattaaatgttgcatcttg 440  Q
    | || | ||||||||||  |||||||||||||| ||||||||||||    
T  25857579 a-ttcagtttttgttggaaggagtcttaattaagtgttgcatcttg 25857535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 243 - 373
Target Start/End: Original strand, 25714615 - 25714739
Alignment:
Q  243 gaaaatgatagtatggttgatgatcacgttgacatatcatcacttcttgcaacactctacacaaatgattagtcgacgaaattggtggtatttgttaccg 342  Q
    ||||||||||| ||||||||||||||| ||||||||||||   ||||||| ||||| ||||||||||| ||||||||| |||||||| ||||||  ||      
T  25714615 gaaaatgatagcatggttgatgatcacattgacatatcat---ttcttgctacactatacacaaatgactagtcgacggaattggtgatatttgcaac-- 25714709  T
Q  343 catggaaggtgttgtatcaataaggatataa 373  Q
    ||||||||||||||||||  |||||||||||    
T  25714710 catggaaggtgttgtatc-ttaaggatataa 25714739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 130
Target Start/End: Complemental strand, 25859305 - 25859194
Alignment:
Q  19 tattatgtgtgaaaattagagctcagtgttaatatgatcactatgttaatgatcaacattattttggagctgaaacataatatacatatgaaaactatag 118  Q
    |||||||||| |||||||||||||| ||||||||  ||||||||||   ||||||||| ||||||| |||||| |||| ||||  | ||||||  || ||    
T  25859305 tattatgtgtaaaaattagagctcattgttaatagtatcactatgtcggtgatcaacactattttgaagctgagacattatatcaacatgaaatttagag 25859206  T
Q  119 cttagtgttaat 130  Q
    ||||||||||||    
T  25859205 cttagtgttaat 25859194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 551 - 625
Target Start/End: Original strand, 4009627 - 4009701
Alignment:
Q  551 tgttagaatttcttttaatattatgtgggctacaatcaattgtaaattttagctttaataaaaacggattgatgt 625  Q
    |||||||||||||| ||||||| ||||||||||||||||||||   |||| | ||||||||||||||| ||||||    
T  4009627 tgttagaatttcttctaatattttgtgggctacaatcaattgttggttttggttttaataaaaacggactgatgt 4009701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 551 - 625
Target Start/End: Original strand, 6565692 - 6565766
Alignment:
Q  551 tgttagaatttcttttaatattatgtgggctacaatcaattgtaaattttagctttaataaaaacggattgatgt 625  Q
    |||||||||||||| ||||||| |||||||| |||||||||||  ||||| | ||||||||||||||| ||||||    
T  6565692 tgttagaatttcttctaatattttgtgggctgcaatcaattgttgattttggttttaataaaaacggactgatgt 6565766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 549 - 625
Target Start/End: Original strand, 12406592 - 12406668
Alignment:
Q  549 gatgttagaatttcttttaatattatgtgggctacaatcaattgtaaattttagctttaataaaaacggattgatgt 625  Q
    |||||||||||||||| ||| ||| ||||||||||||||||||||   |||| | |||||||||||| || ||||||    
T  12406592 gatgttagaatttcttctaacattttgtgggctacaatcaattgttggttttggttttaataaaaacagactgatgt 12406668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 521 - 561
Target Start/End: Complemental strand, 25857457 - 25857417
Alignment:
Q  521 tacacaattgattttgcccaaaagggaggatgttagaattt 561  Q
    |||||||||||||||||||||  ||||| ||||||||||||    
T  25857457 tacacaattgattttgcccaagtgggagaatgttagaattt 25857417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 170; Significance: 6e-91; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 18 - 444
Target Start/End: Original strand, 30179033 - 30179457
Alignment:
Q  18 atattatgtgtgaaaattagagctcagtgttaatatgatcactatgttaatgatcaacattattttggagctgaaacataatatacatatgaaaactata 117  Q
    ||||||||||||||||||| ||||||||||| ||| ||| |||||||   ||||||||| |||||||||||||| | || ||||||| ||||||  || |    
T  30179033 atattatgtgtgaaaattaaagctcagtgttgataggattactatgtcggtgatcaacactattttggagctgagatattatatacacatgaaatataga 30179132  T
Q  118 gcttagtgttaatagattcactatgtcgataatcaacactattttagagctgagacaatgtggttttccgtga------taacttatctggctttgaggc 211  Q
    ||| | ||||||||   ||  ||||| | | |||||||||||||| ||| |||| || |||||||||||||||      ||| || ||||||||||| ||    
T  30179133 gctcaatgttaatatgatctttatgttggtgatcaacactattttggagttgaggcagtgtggttttccgtgaaccacataatttctctggctttgaagc 30179232  T
Q  212 attggagagaaattgaggattgacgtacaaagaaaatgatagtatggttgatgatcacgttgacatatcatcacttcttgcaacactctacacaaatgat 311  Q
    ||||||||||||||||||| |||| ||    ||||||||||||||| ||| ||||||||||||||||||||   ||||||| |||||||||||||||||     
T  30179233 attggagagaaattgaggactgacata----gaaaatgatagtatgattggtgatcacgttgacatatcatt--ttcttgctacactctacacaaatgac 30179326  T
Q  312 tagtcgacgaaattggtggtatttgttaccgcatggaaggtgttgtatcaataaggatataactacctgcatgattcgatatcatttaattttttgttgg 411  Q
    ||||||||| ||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||| ||||||||||    
T  30179327 tagtcgacggaattgatggtatttgtaacc-catggaaggtgttgtatcaataaggatataactaccgccataattcgatatcatttaa-tttttgttgg 30179424  T
Q  412 gtggagtcttaattaaatgttgcatcttgagat 444  Q
     ||||| ||||||||| ||| ||||||||||||    
T  30179425 atggagccttaattaagtgtcgcatcttgagat 30179457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 254 - 406
Target Start/End: Complemental strand, 4650060 - 4649913
Alignment:
Q  254 tatggttgatgatcacgttgacatatcatcacttcttgcaacactctacacaaatgattagtcgacgaaattggtggtatttgttaccgcatggaaggtg 353  Q
    |||||| ||||||||||||||||||||||   ||||||| ||||||||||||||||| |||||||||||||| ||| ||||||| |||  ||||||||||    
T  4650060 tatggtcgatgatcacgttgacatatcat---ttcttgctacactctacacaaatgactagtcgacgaaatttgtgatatttgtaacc--atggaaggtg 4649966  T
Q  354 ttgtatcaataaggatataactacctgcatgattcgatatcatttaatttttt 406  Q
    || ||||||||||||||||||||||  ||||||||||||||||| ||||||||    
T  4649965 ttctatcaataaggatataactaccgccatgattcgatatcattcaatttttt 4649913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 92; Significance: 2e-44; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 238 - 437
Target Start/End: Complemental strand, 18424839 - 18424644
Alignment:
Q  238 acaaagaaaatgatagtatggttgatgatcacgttgacatatcatcacttcttgcaacactctacacaaatgattagtcgacgaaattggtggtatttgt 337  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||   ||||||| || ||||||||| || | ||||||||| |||||||| |||||||    
T  18424839 acaatgaaaatgatagtatggtcgatgatcacgttgacatatcat---ttcttgctacgctctacacagataactagtcgacggaattggtgatatttgt 18424743  T
Q  338 taccgcatggaaggtgttgtatcaat-aaggatataactacctgcatgattcgatatcatttaattttttgttgggtggagtcttaattaaatgttgcat 436  Q
     |||  ||||||||||| |||||| | |||||||||||||||  |||||||||||||| || | ||||||||||| ||||||||||||||| ||||||||    
T  18424742 aacc--atggaaggtgtggtatcagttaaggatataactaccgccatgattcgatatctttcagttttttgttggatggagtcttaattaagtgttgcat 18424645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 521 - 625
Target Start/End: Complemental strand, 18424540 - 18424436
Alignment:
Q  521 tacacaattgattttgcccaaaagggaggatgttagaatttcttttaatattatgtgggctacaatcaattgtaaattttagctttaataaaaacggatt 620  Q
    |||||||||||||||||||||  ||||| ||||||||||||||| ||||||| |||||||| |||||||||||   |||| | ||||||||||||||| |    
T  18424540 tacacaattgattttgcccaagtgggagaatgttagaatttcttctaatattttgtgggctgcaatcaattgttggttttggttttaataaaaacggact 18424441  T
Q  621 gatgt 625  Q
    |||||    
T  18424440 gatgt 18424436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 551 - 593
Target Start/End: Original strand, 32637964 - 32638006
Alignment:
Q  551 tgttagaatttcttttaatattatgtgggctacaatcaattgt 593  Q
    |||||||||||||| ||||||| |||||||| |||||||||||    
T  32637964 tgttagaatttcttctaatattttgtgggctgcaatcaattgt 32638006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 20 - 183
Target Start/End: Original strand, 38431809 - 38431972
Alignment:
Q  20 attatgtgtgaaaattagagctcagtgttaatatgatcactatgttaatgatcaacattattttggagctgaaacataatatacatatgaaaactatagc 119  Q
    |||||||||||| ||||||| | |||||||||| |||||||||||| |||||||||| || ||||||||||| |||| |||||||||||||||||| ||     
T  38431809 attatgtgtgaatattagagtttagtgttaataggatcactatgttgatgatcaacactactttggagctgagacattatatacatatgaaaactagagt 38431908  T
Q  120 ttagtgttaatagattcactatgtcgataatcaacactattttagagctgagacaatgtggttt 183  Q
    |||||||||||  |||||||||||||  | |||||||||||||  ||||||| || ||||||||    
T  38431909 ttagtgttaatctattcactatgtcggcagtcaacactattttgaagctgaggcagtgtggttt 38431972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 82; Significance: 2e-38; HSPs: 3)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 238 - 505
Target Start/End: Original strand, 13276 - 13539
Alignment:
Q  238 acaaagaaaatgatagtatggttgatgatcacgttgacatatcatcacttcttgcaacactctacacaaatgattagtcgacgaaattggtggtatttgt 337  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||   ||||||| | |||||||||| |||| |||| |||| |||||||| |||||||    
T  13276 acaatgaaaatgatagtatggtcgatgatcacgttgacatatcat---ttcttgctaaactctacacagatgactagttgacggaattggtgatatttgt 13372  T
Q  338 taccgcatggaaggtgttgtatcaa-taaggatataactacctgcatgattcgatatcatttaattttttgttgggtggagtcttaattaaatgttgcat 436  Q
     ||  |||||||||| ||||||||| ||||||||||||||||  |||||||||| |||||| | || || |||||  |||||||| ||||| ||||||||    
T  13373 aac--catggaaggtattgtatcaattaaggatataactaccgccatgattcgaaatcattcagttcttagttggacggagtctttattaagtgttgcat 13470  T
Q  437 cttgagat----tagttgtcacgttagaaagttaatttgttattagtccgagggtcgttttcaaaaatgtttt 505  Q
    | || |||    |||| | |||||||| |||    |||||||| |||||||  ||||||||||||||| ||||    
T  13471 catgggatcatgtagtggccacgttaggaag----tttgttatcagtccgaaagtcgttttcaaaaatatttt 13539  T

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Target: scaffold0078; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 19 - 189
Target Start/End: Original strand, 12980 - 13150
Alignment:
Q  19 tattatgtgtgaaaattagagctcagtgttaatatgatcactatgttaatgatcaacattattttggagctgaaacataatatacatatgaaaactatag 118  Q
    |||||||| ||||||||||||||||||||| |||  ||||||||||   ||||||||| |||||||||||||| |||| ||||||| || |||  || ||    
T  12980 tattatgtatgaaaattagagctcagtgttcatagtatcactatgtcggtgatcaacactattttggagctgacacattatatacacataaaatttagag 13079  T
Q  119 cttagtgttaatagattcactatgtcgataatcaacactattttagagctgagacaatgtggttttccgtg 189  Q
    || ||||| | | |  |||||||| |  | ||| || ||||||| |||||||| |||||| ||||||||||    
T  13080 ctcagtgtcattgggatcactatgccagtgatcgacgctattttggagctgaggcaatgtcgttttccgtg 13150  T

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Target: scaffold0078; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 521 - 625
Target Start/End: Original strand, 13562 - 13666
Alignment:
Q  521 tacacaattgattttgcccaaaagggaggatgttagaatttcttttaatattatgtgggctacaatcaattgtaaattttagctttaataaaaacggatt 620  Q
    |||| ||||||||||||||||   |||| ||||||||||||||| ||||||| |||||| | |||||||||||   |||| | |||||| |||||||| |    
T  13562 tacataattgattttgcccaagttggagaatgttagaatttcttctaatattttgtgggatgcaatcaattgttggttttggttttaatgaaaacggact 13661  T
Q  621 gatgt 625  Q
    |||||    
T  13662 gatgt 13666  T

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Target: chr6 (Bit Score: 80; Significance: 3e-37; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 243 - 437
Target Start/End: Original strand, 16690594 - 16690785
Alignment:
Q  243 gaaaatgatagtat-ggttgatgatcacgttgacatatcatcacttcttgcaacactctacacaaatgattagtcgacgaaattggtggtatttgttacc 341  Q
    ||||||||||| || ||| ||||||||||||||||||||||   ||||||| ||||||||||||||||| ||||||||| |||||||| ||||||| ||     
T  16690594 gaaaatgatagaattggtcgatgatcacgttgacatatcat---ttcttgctacactctacacaaatgactagtcgacggaattggtgatatttgtaac- 16690689  T
Q  342 gcatggaaggtgttgtatcaa-taaggatataactacctgcatgattcgatatcatttaattttttgttgggtggagtcttaattaaatgttgcatc 437  Q
     |||||||||||||| ||||| ||||||||||||||||   ||||||||||||| || | || || |||||  |||||||||||||| |||||||||    
T  16690690 -catggaaggtgttgcatcaattaaggatataactaccgctatgattcgatatctttcagttcttagttggaaggagtcttaattaagtgttgcatc 16690785  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 551 - 625
Target Start/End: Original strand, 16663029 - 16663103
Alignment:
Q  551 tgttagaatttcttttaatattatgtgggctacaatcaattgtaaattttagctttaataaaaacggattgatgt 625  Q
    |||||||||||||| ||||||| ||||||||||||||||||||   |||| | ||||||||||||||| ||||||    
T  16663029 tgttagaatttcttctaatattttgtgggctacaatcaattgttggttttggttttaataaaaacggactgatgt 16663103  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 521 - 625
Target Start/End: Original strand, 16690873 - 16690983
Alignment:
Q  521 tacacaattgattttgcccaaaagggaggatgttagaatttct------tttaatattatgtgggctacaatcaattgtaaattttagctttaataaaaa 614  Q
    |||||||||||||||||||||  ||||| ||||| ||||||||      | ||||||| ||||||||||||||||||||   |||| | |||||||||||    
T  16690873 tacacaattgattttgcccaagtgggagaatgttggaatttctagatcttctaatattttgtgggctacaatcaattgttggttttggttttaataaaaa 16690972  T
Q  615 cggattgatgt 625  Q
    |||| ||||||    
T  16690973 cggactgatgt 16690983  T

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Target: chr8 (Bit Score: 51; Significance: 7e-20; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 315 - 439
Target Start/End: Complemental strand, 32116146 - 32116026
Alignment:
Q  315 tcgacgaaattggtggtatttgttaccgcatggaaggtgttgtatcaataaggatataactacctgcatgattcgatatcatttaattttttgttgggtg 414  Q
    |||||| ||||| || ||||||| |||  ||||||||||||||||||||||||||||||||| |  || ||||| |||||||||||  ||||||||| ||    
T  32116146 tcgacggaattgatgatatttgtaacc--atggaaggtgttgtatcaataaggatataactatcaccaagattcaatatcatttaa--ttttgttggatg 32116051  T
Q  415 gagtcttaattaaatgttgcatctt 439  Q
    |||||||| |||  |||||||||||    
T  32116050 gagtcttatttaggtgttgcatctt 32116026  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 551 - 625
Target Start/End: Original strand, 8908451 - 8908525
Alignment:
Q  551 tgttagaatttcttttaatattatgtgggctacaatcaattgtaaattttagctttaataaaaacggattgatgt 625  Q
    |||||||||||||| ||||||| ||||||||||||||||||||   |||| | ||||||||||||||||||||||    
T  8908451 tgttagaatttcttctaatattttgtgggctacaatcaattgttggttttggttttaataaaaacggattgatgt 8908525  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 550 - 594
Target Start/End: Complemental strand, 15962584 - 15962540
Alignment:
Q  550 atgttagaatttcttttaatattatgtgggctacaatcaattgta 594  Q
    ||||||||||||||| ||||||| |||| ||| ||||||||||||    
T  15962584 atgttagaatttcttctaatattttgtgtgctgcaatcaattgta 15962540  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 553 - 625
Target Start/End: Complemental strand, 24040411 - 24040339
Alignment:
Q  553 ttagaatttcttttaatattatgtgggctacaatcaattgtaaattttagctttaataaaaacggattgatgt 625  Q
    |||||||||||| ||||||| |||||||| |||||||||||   |||||| ||||||||||| ||| ||||||    
T  24040411 ttagaatttcttctaatattttgtgggctgcaatcaattgttggttttagttttaataaaaatggactgatgt 24040339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 551 - 625
Target Start/End: Complemental strand, 32185230 - 32185156
Alignment:
Q  551 tgttagaatttcttttaatattatgtgggctacaatcaattgtaaattttagctttaataaaaacggattgatgt 625  Q
    |||||||||||||| |||||||  ||| ||| ||||||||||| |||||| | |||||||  |||||| ||||||    
T  32185230 tgttagaatttcttctaatatttcgtgtgctgcaatcaattgttaatttttgttttaatatcaacggactgatgt 32185156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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