View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7167_low_11 (Length: 278)
Name: NF7167_low_11
Description: NF7167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7167_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 261
Target Start/End: Complemental strand, 39736438 - 39736194
Alignment:
| Q |
19 |
ctaccgtgaaaatcaagaagctataaagggtagcttnnnnnnnnnn--cacgtctggctaaaacctaccgcagaagcaaacacttgctaaatcagacaac |
116 |
Q |
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| T |
39736438 |
ctaccgtgaaaatcaagaagctataaagggtagcttaaaaaaaaaaaacacgtctggctaaaacctaccgcagaagcaaacacttgctaaatcagacaac |
39736339 |
T |
|
| Q |
117 |
acaaactaacctcataaagttcaatctcttcatcaagatcataaccagccaatttatttatccttgctaaaattgctgacgggttactataacagttaac |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39736338 |
acaaactaacctcataaagttcaatctcttcatcaagatcataaccagccaatttatttatccttgctaaaattgctgacgggttactataacagttaac |
39736239 |
T |
|
| Q |
217 |
aaagagccttccaacataactgccatagaaggaaaatacatttga |
261 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39736238 |
aaagagccttccaacataactgccatagaaggaaaatacatttga |
39736194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 104 - 265
Target Start/End: Original strand, 39910915 - 39911076
Alignment:
| Q |
104 |
taaatcagacaacacaaactaacctcataaagttcaatctcttcatcaagatcataaccagccaatttatttatccttgctaaaattgctgacgggttac |
203 |
Q |
| |
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||||||||||||||||||| |||||| || |||||||||||||||||| |||||||||||||||||||||||| | ||| ||| ||| ||| || ||| |
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| T |
39910915 |
taaatcagacaacacaaaccaacctcgtatagttcaatctcttcatcaggatcataaccagccaatttatttaactttgttaagatttgtgatggcttat |
39911014 |
T |
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| Q |
204 |
tataacagttaacaaagagccttccaacataactgccatagaaggaaaatacatttgatgtc |
265 |
Q |
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| T |
39911015 |
cagtacagtttacaaggagccttccaacataactgccatcaaagggaaatacatttgatgtc |
39911076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 109 - 265
Target Start/End: Original strand, 39847546 - 39847702
Alignment:
| Q |
109 |
cagacaacacaaactaacctcataaagttcaatctcttcatcaagatcataaccagccaatttatttatccttgctaaaattgctgacgggttactataa |
208 |
Q |
| |
|
||||||| ||||| ||||||||||||||| || ||||||||| |||||||||||||||||||||||| | ||| ||| ||| |||| || |||| | | |
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| T |
39847546 |
cagacaaagcaaaccaacctcataaagttcgatatcttcatcaggatcataaccagccaatttatttaactttgttaagatttctgatggtttaccagta |
39847645 |
T |
|
| Q |
209 |
cagttaacaaagagccttccaacataactgccatagaaggaaaatacatttgatgtc |
265 |
Q |
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|||| ||||||||||||||| |||||||||||||||||| |||||||||||||||| |
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| T |
39847646 |
cagtcgacaaagagccttccagcataactgccatagaagggaaatacatttgatgtc |
39847702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 104 - 259
Target Start/End: Original strand, 39864566 - 39864720
Alignment:
| Q |
104 |
taaatcagacaacacaaactaacctcataaagttcaatctcttcatcaagatcataaccagccaatttatttatccttgctaaaattgctgacgggttac |
203 |
Q |
| |
|
|||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| || | ||| ||| |||| || ||| |
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| T |
39864566 |
taaatcagacaaaacaaaccaacctcataaagttcaatctcttcatcaggatcataaccagccaatttatttaagctagttaagatttctgatggcttat |
39864665 |
T |
|
| Q |
204 |
tataacagttaacaaagagccttccaacataactgccatagaaggaaaatacattt |
259 |
Q |
| |
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| |||||| ||||||| ||||||| ||||||||||||| |||| |||||||||| |
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| T |
39864666 |
cagtacagttcacaaagaaccttccagcataactgccata-aagggaaatacattt |
39864720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 124 - 262
Target Start/End: Original strand, 39898168 - 39898306
Alignment:
| Q |
124 |
aacctcataaagttcaatctcttcatcaagatcataaccagccaatttatttatccttgctaaaattgctgacgggttactataacagttaacaaagagc |
223 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||||||||| ||||||| |||| ||| ||| |||| || |||| |||||| ||||||||| |
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| T |
39898168 |
aacctcataaagttcaatctcttcatcaggatcaaaaccagccaaattatttaaacttgttaagatttctgatggtttaccggtacagttcacaaagagc |
39898267 |
T |
|
| Q |
224 |
cttccaacataactgccatagaaggaaaatacatttgat |
262 |
Q |
| |
|
||||||||||||||||||| || | ||||||||||||| |
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| T |
39898268 |
cttccaacataactgccatcaaatggaaatacatttgat |
39898306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 108 - 241
Target Start/End: Original strand, 39857374 - 39857507
Alignment:
| Q |
108 |
tcagacaacacaaactaacctcataaagttcaatctcttcatcaagatcataaccagccaatttatttatccttgctaaaattgctgacgggttactata |
207 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||| || || |||| || ||| | |
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| T |
39857374 |
tcagacaacaaaaaccaacctcataaagttcaatctcttcattaggatcataaccagccaatttatttaaccttgccaagatatctgatggcttatcctt |
39857473 |
T |
|
| Q |
208 |
acagttaacaaagagccttccaacataactgcca |
241 |
Q |
| |
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|||||| |||| ||||||||||||||||||||| |
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| T |
39857474 |
acagttcacaataagccttccaacataactgcca |
39857507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 104 - 265
Target Start/End: Original strand, 37465970 - 37466131
Alignment:
| Q |
104 |
taaatcagacaacacaaactaacctcataaagttcaatctcttcatcaagatcataaccagccaatttatttatccttgctaaaattgctgacgggttac |
203 |
Q |
| |
|
|||| ||||||||| |||| ||||||||||||| |||||||||| ||| ||||||||||||||| |||||||| ||||||||| ||| |||| || |||| |
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| T |
37465970 |
taaaacagacaacagaaaccaacctcataaagtccaatctcttcttcaggatcataaccagccattttatttaaccttgctaagatttctgatggtttac |
37466069 |
T |
|
| Q |
204 |
tataacagttaacaaagagccttccaacataactgccatagaaggaaaatacatttgatgtc |
265 |
Q |
| |
|
| || |||||||| || |||||| ||||||||| |||| ||| |||||||||||| |
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|
| T |
37466070 |
cagtgttattcacaaagagtctgccaacaaaactgccatcaaagggaaaaacatttgatgtc |
37466131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 117 - 242
Target Start/End: Complemental strand, 36059337 - 36059212
Alignment:
| Q |
117 |
acaaactaacctcataaagttcaatctcttcatcaagatcataaccagccaatttatttatccttgctaaaattgctgacgggttactataacagttaac |
216 |
Q |
| |
|
|||||| ||||||||||||| |||| ||||| ||| || |||||||||||| || ||||| ||||| ||| ||| |||| || || | | ||| || || |
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|
| T |
36059337 |
acaaaccaacctcataaagtacaatatcttcttcaggaacataaccagccatttcatttagccttgttaagatttctgatggcttgccagtacacttcac |
36059238 |
T |
|
| Q |
217 |
aaagagccttccaacataactgccat |
242 |
Q |
| |
|
|||||||||||||||||| ||||||| |
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|
| T |
36059237 |
aaagagccttccaacatagctgccat |
36059212 |
T |
|
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