View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7167_low_12 (Length: 274)
Name: NF7167_low_12
Description: NF7167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7167_low_12 |
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| [»] scaffold0534 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 49 - 256
Target Start/End: Original strand, 43313456 - 43313663
Alignment:
| Q |
49 |
cattattgttcagtttaagaaaatatacatgatagaaccagcaaaatgaacaagctaattttgtatattagtttaagtaaaatatacatgatagtcacct |
148 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
43313456 |
cattattgttcagtttaagaaaatatacatgatagaaccggcaaaatgaacaagctaattttgtatattagtttaagcaaaatatacatgatagtcacct |
43313555 |
T |
|
| Q |
149 |
gtttaaatcttttagaagctctttcatacttcccaactttccacggtacaatcccatcgtctagcttcttacgagaagcttttatcttctctttagtgtt |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43313556 |
gtttaaatcttttagaagctctttcatacttcccaactttccacagtacaatcccatcgtctagcttcttacgagaagcttttatcttctctttagtgtt |
43313655 |
T |
|
| Q |
249 |
catctcac |
256 |
Q |
| |
|
||| |||| |
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|
| T |
43313656 |
catttcac |
43313663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 49 - 256
Target Start/End: Complemental strand, 34743874 - 34743667
Alignment:
| Q |
49 |
cattattgttcagtttaagaaaatatacatgatagaaccagcaaaatgaacaagctaattttgtatattagtttaagtaaaatatacatgatagtcacct |
148 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
34743874 |
cattattgttcagtttaagaaaatatacatgatagaaccggcaaaatgaacaagctaattttgtatattagtttaagcaaaatatacatgatagtcacct |
34743775 |
T |
|
| Q |
149 |
gtttaaatcttttagaagctctttcatacttcccaactttccacggtacaatcccatcgtctagcttcttacgagaagcttttatcttctctttagtgtt |
248 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34743774 |
gtttaaatcttttagaagctctttcatacttcccaactttccacagtacaatcccatcgtctagcttcttacgagaagcttttatcttctctttagtgtt |
34743675 |
T |
|
| Q |
249 |
catctcac |
256 |
Q |
| |
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||| |||| |
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| T |
34743674 |
catttcac |
34743667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 49 - 256
Target Start/End: Complemental strand, 21531685 - 21531478
Alignment:
| Q |
49 |
cattattgttcagtttaagaaaatatacatgatagaaccagcaaaatgaacaagctaattttgtatattagtttaagtaaaatatacatgatagtcacct |
148 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
21531685 |
cattattgttcagtttaagaaaatatacatgatagaaccggcaaaatgaacaagctaattttgtatattagtttaagcaaaatatacatgatagtcacct |
21531586 |
T |
|
| Q |
149 |
gtttaaatcttttagaagctctttcatacttcccaactttccacggtacaatcccatcgtctagcttcttacgagaagcttttatcttctctttagtgtt |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21531585 |
gtttaaatcttttagaagctctttcatacttcccaactttccacagtacaatcccatcgtctagcttcttacgagaagcttttatcttctctttagtgtt |
21531486 |
T |
|
| Q |
249 |
catctcac |
256 |
Q |
| |
|
||| |||| |
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|
| T |
21531485 |
catttcac |
21531478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 49 - 256
Target Start/End: Complemental strand, 35167626 - 35167419
Alignment:
| Q |
49 |
cattattgttcagtttaagaaaatatacatgatagaaccagcaaaatgaacaagctaattttgtatattagtttaagtaaaatatacatgatagtcacct |
148 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
35167626 |
cattattgttcagtttaagaaaatatacatgatagaaccggcaaaatgaacaagctaattttgtatattagtttaagcaaaatatacatgatagtcacct |
35167527 |
T |
|
| Q |
149 |
gtttaaatcttttagaagctctttcatacttcccaactttccacggtacaatcccatcgtctagcttcttacgagaagcttttatcttctctttagtgtt |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35167526 |
gtttaaatcttttagaagctctttcatacttcccaactttccacagtacaatcccatcgtctagcttcttacgagaagcttttatcttctctttagtgtt |
35167427 |
T |
|
| Q |
249 |
catctcac |
256 |
Q |
| |
|
||| |||| |
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|
| T |
35167426 |
catttcac |
35167419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0534 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0534
Description:
Target: scaffold0534; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 188 - 256
Target Start/End: Original strand, 11508 - 11576
Alignment:
| Q |
188 |
tccacggtacaatcccatcgtctagcttcttacgagaagcttttatcttctctttagtgttcatctcac |
256 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
11508 |
tccacagtacaatcccatcgtctagcttcttacgagaagcttttatcttctctttagtgttcatttcac |
11576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 118
Target Start/End: Original strand, 2874570 - 2874631
Alignment:
| Q |
57 |
ttcagtttaagaaaatatacatgatagaaccagcaaaatgaacaagctaattttgtatatta |
118 |
Q |
| |
|
|||||||| |||||| |||| |||||||||| ||| |||||||||| ||||||||||||||| |
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| T |
2874570 |
ttcagtttcagaaaagatacctgatagaacccgcagaatgaacaaggtaattttgtatatta |
2874631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 118
Target Start/End: Original strand, 2889244 - 2889305
Alignment:
| Q |
57 |
ttcagtttaagaaaatatacatgatagaaccagcaaaatgaacaagctaattttgtatatta |
118 |
Q |
| |
|
|||||||| |||||| |||| |||||||||| ||| |||||||||| ||||||||||||||| |
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|
| T |
2889244 |
ttcagtttcagaaaagatacctgatagaacccgcagaatgaacaaggtaattttgtatatta |
2889305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 118
Target Start/End: Complemental strand, 3145618 - 3145557
Alignment:
| Q |
57 |
ttcagtttaagaaaatatacatgatagaaccagcaaaatgaacaagctaattttgtatatta |
118 |
Q |
| |
|
|||||||| |||||| |||| |||||||||| ||| |||||||||| ||||||||||||||| |
|
|
| T |
3145618 |
ttcagtttcagaaaagatacctgatagaacccgcagaatgaacaaggtaattttgtatatta |
3145557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 118
Target Start/End: Complemental strand, 3160485 - 3160424
Alignment:
| Q |
57 |
ttcagtttaagaaaatatacatgatagaaccagcaaaatgaacaagctaattttgtatatta |
118 |
Q |
| |
|
|||||||| |||||| |||| |||||||||| ||| |||||||||| ||||||||||||||| |
|
|
| T |
3160485 |
ttcagtttcagaaaagatacctgatagaacctgcagaatgaacaaggtaattttgtatatta |
3160424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 57 - 118
Target Start/End: Complemental strand, 2797551 - 2797490
Alignment:
| Q |
57 |
ttcagtttaagaaaatatacatgatagaaccagcaaaatgaacaagctaattttgtatatta |
118 |
Q |
| |
|
|||||||| |||||| ||| |||||||||| ||| |||||||||| ||||||||||||||| |
|
|
| T |
2797551 |
ttcagtttcagaaaagatagctgatagaacccgcagaatgaacaaggtaattttgtatatta |
2797490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 57 - 118
Target Start/End: Original strand, 2848858 - 2848919
Alignment:
| Q |
57 |
ttcagtttaagaaaatatacatgatagaaccagcaaaatgaacaagctaattttgtatatta |
118 |
Q |
| |
|
|||||||| |||||| |||| ||||||||| ||| |||||||||| ||||||||||||||| |
|
|
| T |
2848858 |
ttcagtttcagaaaagataccggatagaacccgcagaatgaacaaggtaattttgtatatta |
2848919 |
T |
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