View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7167_low_14 (Length: 242)
Name: NF7167_low_14
Description: NF7167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7167_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 154; Significance: 8e-82; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 15921243 - 15921456
Alignment:
| Q |
1 |
aaggaggtgaacataattcgatgcggaaaaa-tacaaatcaagaccaagaagacagggataaggaagaaattaattcgaattggaatacttataagagca |
99 |
Q |
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||||||||||||||| ||| ||||||||||| ||||| |||||||||||||||||| ||| ||||||| ||||||| |||||||||||||||||||||| |
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| T |
15921243 |
aaggaggtgaacatagttcaatgcggaaaaaatacaactcaagaccaagaagacagtgatgaggaagatattaattttaattggaatacttataagagca |
15921342 |
T |
|
| Q |
100 |
tacgggatctaaagacagcaggaattcgagtggtagcaaataagacggatgagtggaactggagtaacatttcgttcaagtctaaatggtttagtggaga |
199 |
Q |
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||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15921343 |
tacgggatctaaaaacagtaggaattcgagtggtagcaaataagacagatgagtggaactggagtaacatttcgttcaagtctaaatggtttagtggaga |
15921442 |
T |
|
| Q |
200 |
actaagacttccta |
213 |
Q |
| |
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| |||| ||||||| |
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| T |
15921443 |
attaaggcttccta |
15921456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 15873853 - 15873641
Alignment:
| Q |
1 |
aaggaggtgaacataattcgatgcggaaaaatacaaatcaagaccaagaagacagggataaggaagaaattaattcgaattggaatacttataagagcat |
100 |
Q |
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||||| ||||||| ||||||||| ||||||||| || ||||||||||||||| | ||| ||||||||||||||| |||||||||||||||||||||||| |
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| T |
15873853 |
aaggaagtgaacacaattcgatgaggaaaaataaaactcaagaccaagaagatattgatgaggaagaaattaatttgaattggaatacttataagagcat |
15873754 |
T |
|
| Q |
101 |
acgggatctaaagacagcaggaattcgagtggtagcaaataagacggatgagtggaactggagtaacatttcgttcaagtctaaatggtttagtggagaa |
200 |
Q |
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| T |
15873753 |
acgggatctaaagacagtaggaattcaagtggtagcaaataagacagatgagtggaactggagtaacatttcgttcacgtctaaatggtttaatggagaa |
15873654 |
T |
|
| Q |
201 |
ctaagacttccta |
213 |
Q |
| |
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||||| ||||||| |
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| T |
15873653 |
ctaaggcttccta |
15873641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 27 - 213
Target Start/End: Original strand, 15900220 - 15900406
Alignment:
| Q |
27 |
aaaaatacaaatcaagaccaagaagacagggataaggaagaaattaattcgaattggaatacttataagagcatacgggatctaaagacagcaggaattc |
126 |
Q |
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||||||||||| ||||||||| |||| || |||||| ||||||| ||| ||||||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
15900220 |
aaaaatacaaagcaagaccaaaaagatagtgataagccagaaattgatttcaattggaatacttataagagcatacgggatctaaaaacagtaggaattc |
15900319 |
T |
|
| Q |
127 |
gagtggtagcaaataagacggatgagtggaactggagtaacatttcgttcaagtctaaatggtttagtggagaactaagacttccta |
213 |
Q |
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| T |
15900320 |
aagtggtagcaaataagacagataagtggacctggagtaacatttctttcaagtctaaatggtttagtggcgaactaaggcttccta |
15900406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 78 - 213
Target Start/End: Complemental strand, 14060189 - 14060054
Alignment:
| Q |
78 |
aattggaatacttataagagcatacgggatctaaagacagcaggaattcgagtggtagcaaataagacggatgagtggaactggagtaacatttcgttca |
177 |
Q |
| |
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||||||||||||||||| |||||| |||||||||| | | ||||||||||||| | |||||||||| |||| |||| ||||||||| |||| |||| |
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| T |
14060189 |
aattggaatacttataaaagcataagggatctaaaaataataggaattcgagtgaaaccaaataagacagatgcatggacatggagtaacgtttctttca |
14060090 |
T |
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| Q |
178 |
agtctaaatggtttagtggagaactaagacttccta |
213 |
Q |
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||||||| ||||| |||||||||||||||||||||| |
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| T |
14060089 |
agtctaagtggttgagtggagaactaagacttccta |
14060054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 81 - 213
Target Start/End: Complemental strand, 14048815 - 14048683
Alignment:
| Q |
81 |
tggaatacttataagagcatacgggatctaaagacagcaggaattcgagtggtagcaaataagacggatgagtggaactggagtaacatttcgttcaagt |
180 |
Q |
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|||||||||||||| |||||| |||||||||| | | ||||||||||||| | |||||||||| |||| |||| ||||||||| |||| ||||||| |
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| T |
14048815 |
tggaatacttataaaagcataagggatctaaaaatggtaggaattcgagtgaaaccaaataagacagatgcatggacatggagtaacgtttccttcaagt |
14048716 |
T |
|
| Q |
181 |
ctaaatggtttagtggagaactaagacttccta |
213 |
Q |
| |
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|||| ||||| |||||||||||| ||||||||| |
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| T |
14048715 |
ctaagtggttgagtggagaactacgacttccta |
14048683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 152 - 213
Target Start/End: Complemental strand, 15880511 - 15880450
Alignment:
| Q |
152 |
gtggaactggagtaacatttcgttcaagtctaaatggtttagtggagaactaagacttccta |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
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| T |
15880511 |
gtggaactggagtaacatttcgttcaagtctaaatggtttaatggagaactaaggcttccta |
15880450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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