View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7167_low_3 (Length: 509)
Name: NF7167_low_3
Description: NF7167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7167_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 434; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 19 - 496
Target Start/End: Complemental strand, 279499 - 279022
Alignment:
| Q |
19 |
ctaaaagttgagatgcagtaaatgtccctttaccttgaaaagtgtcttccattgggtcggatgtccatgaccactcgggagagtttcctaatttttgatg |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
279499 |
ctaaaagttgagatgcagtaaatgtccctttaccttgaaaagtgtcttccattgggtcggatgtccatgaccactcgggcgagtttcctaatttttgatc |
279400 |
T |
|
| Q |
119 |
tagttgcttcatataaatatttgtttgtgcttccgtctttgcagtgttgtaaacttctttgttgcagtcttggagaagggacattgaccaagcagaaaca |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
279399 |
tagttgcttcatataaatatttgtttgtgcttcagtctttgcagtgttgtaaacttctttgttgcagtcttggagaagggacattgaccaagcaggaaca |
279300 |
T |
|
| Q |
219 |
taatactttccatcttgttgtaaatcaacttcagcatctttagaggtatgtgaattactcaaaaaacaaattttttgtccagtgtccttatttgtataag |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
279299 |
taatactttccatcttgttgtaaatcaacttcagcatctttagaggtatgtgaattactcaaaaaacaaaatttttgtccagtgcccttatttgtataag |
279200 |
T |
|
| Q |
319 |
tagtcatccataaataatctccatgactctcccaagtagcagtgccattggtacgaaccttctctcctaactttatggcagcatggagtcttttaagatg |
418 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
279199 |
tagtcatccataaagaatctccatgactctcccaagtagcagtgccattggtgagaaccttctctcctaactttatggcagcatggagtcttttaagatg |
279100 |
T |
|
| Q |
419 |
tccatattttggttcatttaagttaccatattcatcaagtggtgcatcatagtcatatgctgtaatgataaacgggcc |
496 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
279099 |
tccatattttggttcaattaagttaccatattcatcaagtggtgcatcatagtcatatgttgtaatgataaacgggcc |
279022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 289943 - 289877
Alignment:
| Q |
20 |
taaaagttgagatgcagtaaatgtccctttaccttgaaaagtgtcttccattgggtcggatgtccat |
86 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||| | || ||||||| |||||| ||||||| |||| |
|
|
| T |
289943 |
taaaagtttagatgcagtaaatgtccctttgcctagtaaggtgtcttgcattggttcggatgcccat |
289877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 24524998 - 24524931
Alignment:
| Q |
19 |
ctaaaagttgagatgcagtaaatgtccctttaccttgaaaagtgtcttccattgggtcggatgtccat |
86 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||| | || ||||||| |||||| || |||| |||| |
|
|
| T |
24524998 |
ctaaaagtttagatgcagtaaatgtccctttgcctggtaaggtgtcttgcattggttcagatgcccat |
24524931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 441 - 475
Target Start/End: Original strand, 42988694 - 42988728
Alignment:
| Q |
441 |
ttaccatattcatcaagtggtgcatcatagtcata |
475 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |
|
|
| T |
42988694 |
ttaccatattcatcaagaggtgcatcatagtcata |
42988728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 440 - 477
Target Start/End: Complemental strand, 18585280 - 18585243
Alignment:
| Q |
440 |
gttaccatattcatcaagtggtgcatcatagtcatatg |
477 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
18585280 |
gttaccatattcatcaagaggtgcatcataatcatatg |
18585243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University