View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7167_low_4 (Length: 455)
Name: NF7167_low_4
Description: NF7167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7167_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 16 - 449
Target Start/End: Original strand, 16488738 - 16489166
Alignment:
| Q |
16 |
attcctatgtcctaatattatgagagtcctattattctaatatttattaagactactgatcgcgaatatctgagactatgaggtaccgctaacacaatta |
115 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||| |
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| T |
16488738 |
attcctatgtcctaatattatgagagtactattattctaatatttattaagactactgatcacgaatatctgagactatgcggtacctctaacacaatta |
16488837 |
T |
|
| Q |
116 |
caatatggaagttgttttgtttttcataaatgaccctaaaacaaataccaccacatctataatcggaaacggctggaaaagattttgcttacgcagtcgt |
215 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
16488838 |
caatatggaagttgt-----ttttcataaatgaccctgaaacaaataccaccacatctataatcggaaacgggtggaaaagattttgcttacgcagtcgt |
16488932 |
T |
|
| Q |
216 |
atcactcctgggaccaaattggaatttaagtgtgactcaatcatggcnnnnnnncatcgttattgtatttagattaactagacaacaatnnnnnnnntta |
315 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||| |
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| T |
16488933 |
atcactcctgggaccaaattggaatttaagtgtgactcaatcatggcaaaaaaacatcgttattgtatttagattaactagataacaataaaaaaaatta |
16489032 |
T |
|
| Q |
316 |
ttcaggattttttaacaactaagtgataatgattcgaaacagtttggaagctgcaccaacacaaagcgttcttctgatgaaaaatattgtaacagtatcg |
415 |
Q |
| |
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|| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
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| T |
16489033 |
tttaggattttttaacaactaactgataatgattcgaaacagtttggaagctgcaccaacgcaaagcgttcttctgatgaaaaatatcgtaacagtatcg |
16489132 |
T |
|
| Q |
416 |
catctaccgattgtaacctaacacagttttattc |
449 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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| T |
16489133 |
catctaccgattgtaacctaacacagttttattc |
16489166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 16 - 449
Target Start/End: Complemental strand, 21814172 - 21813744
Alignment:
| Q |
16 |
attcctatgtcctaatattatgagagtcctattattctaatatttattaagactactgatcgcgaatatctgagactatgaggtaccgctaacacaatta |
115 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||| |
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|
| T |
21814172 |
attcctatgtcctaatattatgagagtactattattctaatatttattaagactactgatcacgaatatctgagactatgcggtacctctaacacaatta |
21814073 |
T |
|
| Q |
116 |
caatatggaagttgttttgtttttcataaatgaccctaaaacaaataccaccacatctataatcggaaacggctggaaaagattttgcttacgcagtcgt |
215 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
21814072 |
caatatggaagttgtttt-----tcataaatgaccctgaaacaaataccaccacatctataatcggaaacgggtggaaaagattttgcttacgcagtcgt |
21813978 |
T |
|
| Q |
216 |
atcactcctgggaccaaattggaatttaagtgtgactcaatcatggcnnnnnnncatcgttattgtatttagattaactagacaacaatnnnnnnnntta |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||| |
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|
| T |
21813977 |
atcactcctgggaccaaattggaatttaagtgtgactcaatcatggcaaaaaaacatcgttattgtatttagattaactagataacaataaaaaaaatta |
21813878 |
T |
|
| Q |
316 |
ttcaggattttttaacaactaagtgataatgattcgaaacagtttggaagctgcaccaacacaaagcgttcttctgatgaaaaatattgtaacagtatcg |
415 |
Q |
| |
|
|| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
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|
| T |
21813877 |
tttaggattttttaacaactaactgataatgattcgaaacagtttggaagctgcaccaacgcaaagcgttcttctgatgaaaaatatcgtaacagtatcg |
21813778 |
T |
|
| Q |
416 |
catctaccgattgtaacctaacacagttttattc |
449 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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|
| T |
21813777 |
catctaccgattgtaacctaacacagttttattc |
21813744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 78 - 445
Target Start/End: Complemental strand, 24847053 - 24846690
Alignment:
| Q |
78 |
cgaatatctgagactatgaggtaccgctaacacaattacaatatggaagttgttttgtttttcataaatgaccctaaaacaaataccaccacatctataa |
177 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
24847053 |
cgaatatctgagattatgcggtaccgctaacacaattacaatatgtaagttgtttt-----tcataaatgaccctaaaacaaataccatcacatctataa |
24846959 |
T |
|
| Q |
178 |
tcggaaacggctggaaaagattttgcttacgcagtcgtatcactcctgggaccaaattggaatttaagtgtgactcaatcatggc--nnnnnnncatcgt |
275 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
24846958 |
tcggaaacgggtggaaaagattttgcttacacagtcgtatcactcctgggaccaaattggaatttaagtgtgactcaatcatggcaaaaaaaaacatcgt |
24846859 |
T |
|
| Q |
276 |
tattgtatttagattaactagacaacaatnnnnnnnnttattcaggattttttaacaactaagtgataatgattcgaaacagtttggaagctgcaccaac |
375 |
Q |
| |
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|| |||||||||||||||| ||||||||| |||| || |||||||||||||||| |||||||||||||||||| ||||||||||||||| | |
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|
| T |
24846858 |
tactgtatttagattaacttgacaacaataaaaaaaa-tattaagaattttttaacaactaattgataatgattcgaaacaatttggaagctgcaccccc |
24846760 |
T |
|
| Q |
376 |
acaaagcgttcttctgatgaaaaatattgtaacagtatcgcatctaccgattgtaacctaacacagtttt |
445 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
24846759 |
gcaaagcgttcttctgatgaaaaatatcacaacagtatcgcatctaccgattgtaacctaacatagtttt |
24846690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 25899199 - 25899247
Alignment:
| Q |
16 |
attcctatgtcctaatattatgagagtcctattattctaatatttatta |
64 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25899199 |
attcctatgtcctaatattatgagagtcctattattctaatatttatta |
25899247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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