View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7167_low_6 (Length: 421)
Name: NF7167_low_6
Description: NF7167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7167_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 390; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 11 - 404
Target Start/End: Complemental strand, 37996461 - 37996068
Alignment:
| Q |
11 |
gacatcacggtatgccaatctgtgccgggaagccatcagatatgctgaggaaggtgctgtagctatggaaacttatgatgctgcaatgagtggtcttaga |
110 |
Q |
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| T |
37996461 |
gacatcacggtatgccaatctgtgccgggaagccatcagatatgctgaggaaggtgctgtagctatggaaacttatgatgctgcaatgagtggtcttaga |
37996362 |
T |
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| Q |
111 |
gaaggtggaaagaaagttgatgtcatgaagagaaatattgccaaagtgtcatcaactaatcatcgactcagcgggaatgattgctccgatcccgacaaga |
210 |
Q |
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| T |
37996361 |
gaaggtggaaagaaagttgatgtcatgaagagaaatattgccaaagtgtcatcaactaatcatcgactcagcgggaatgattgctccgatcccgacaaga |
37996262 |
T |
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| Q |
211 |
aaacccctacttcaacatcagatacaagtacagcccctcttttatggccacttaaggatgaaacatcgacgtttaatcttaatgacgtcgatgctcctgt |
310 |
Q |
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| T |
37996261 |
aaacccctacttcaacatcagatacaagtacagcccctcttttatggccacttaacgatgaaacatcgacgtttaatcttaatgacgtcgatgctcctgt |
37996162 |
T |
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| Q |
311 |
tcaaccaatggctgatctgaatttaccacaaacgaccccagtgccacgtaagcaagttgatgttccatccccagtgcctcgtcagcgagttgat |
404 |
Q |
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| T |
37996161 |
tcaaccaatggctgatctgaatttaccacaaacgaccccagtgccacgtaagcaagttgatgttccatccccagtgcctcgtcagcgagttgat |
37996068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 346 - 405
Target Start/End: Complemental strand, 37996093 - 37996034
Alignment:
| Q |
346 |
ccccagtgccacgtaagcaagttgatgttccatccccagtgcctcgtcagcgagttgatg |
405 |
Q |
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| T |
37996093 |
ccccagtgcctcgtcagcgagttgatagtccatcctcagtgcctcgtcagcgagttgatg |
37996034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 348 - 405
Target Start/End: Complemental strand, 37996025 - 37995968
Alignment:
| Q |
348 |
ccagtgccacgtaagcaagttgatgttccatccccagtgcctcgtcagcgagttgatg |
405 |
Q |
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| T |
37996025 |
ccagtgcctcgtaggcgagttgatggtccatccccaatgcctcgtcagcgagatgatg |
37995968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 27 - 144
Target Start/End: Original strand, 35698764 - 35698881
Alignment:
| Q |
27 |
aatctgtgccgggaagccatcagatatgctgaggaaggtgctgtagctatggaaacttatgatgctgcaatgagtggtcttagagaaggtggaaagaaag |
126 |
Q |
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| T |
35698764 |
aatctatgtcgggaagccatcagatatgctgaagatggggcggtaactatggaaacttataatgctgctatgactggttttaaagaaggtgaaaagaagg |
35698863 |
T |
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| Q |
127 |
ttgatgtcatgaagagaa |
144 |
Q |
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||| ||| ||||| |||| |
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| T |
35698864 |
ttgctgtgatgaaaagaa |
35698881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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