View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7167_low_7 (Length: 415)

Name: NF7167_low_7
Description: NF7167
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7167_low_7
NF7167_low_7
[»] chr3 (6 HSPs)
chr3 (1-320)||(36280777-36281098)
chr3 (51-320)||(7129924-7130196)
chr3 (46-273)||(6820676-6820907)
chr3 (375-410)||(36281153-36281188)
chr3 (58-93)||(48352158-48352193)
chr3 (57-106)||(26955807-26955856)
[»] chr4 (2 HSPs)
chr4 (197-320)||(1072483-1072606)
chr4 (51-120)||(1072686-1072755)
[»] chr8 (2 HSPs)
chr8 (1-320)||(33178054-33178373)
chr8 (56-113)||(15038747-15038804)
[»] chr5 (2 HSPs)
chr5 (58-93)||(27515880-27515915)
chr5 (57-93)||(42918027-42918063)
[»] chr1 (3 HSPs)
chr1 (58-93)||(48710362-48710397)
chr1 (46-108)||(16305349-16305411)
chr1 (57-93)||(13216975-13217011)
[»] chr6 (1 HSPs)
chr6 (48-113)||(2845423-2845488)


Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 36280777 - 36281098
Alignment:
Q  1 tccaacctgtaaaaccattggaattaaccgcccaacacagtctctctcaccaacttttcctcccaagcaaataacctcctacgccacttccacttctcac 100  Q
    |||||||||||||||||||||| ||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  36280777 tccaacctgtaaaaccattggagttagccgcccaacacactctctctcaccaactcttcctcccaagcaaataacctcctacgccacttccactcctcac 36280876  T
Q  101 cgttcaccccccaccccataatgaacacattctctacatttgtcaatttatatcagctaactcgtataatcttctataa--gtatctcagggacatatca 198  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| |||||||    
T  36280877 cgttcactccccaccccataatgaacacattctctacatttgtcaatttatatcagctaactcgtataatcttctataagtgtatctcaggggcatatca 36280976  T
Q  199 tccaatcaggaatctaacaaaaacaaagtagaattcccatcacacatcttccaactaatattatctctcagccactcaccatccacctgacccacgccct 298  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  36280977 tccaatcagggatctaacaaaaacaaagtaaaattcccatcacacatcttccaactaattttatctctcagccactcaccatccacctgacccacgccct 36281076  T
Q  299 ctctgatacttctcatagtctg 320  Q
    ||||||||||||||||||||||    
T  36281077 ctctgatacttctcatagtctg 36281098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 51 - 320
Target Start/End: Original strand, 7129924 - 7130196
Alignment:
Q  51 caacttttcctcccaagcaaataacctcctacgccacttccacttctcaccgttcaccccccaccccataatgaacacattctctacatttgtcaattta 150  Q
    ||||| ||||||||||| ||| |||||||||| |||||| |||  |||||| ||| | |||||||| ||||| |||| || ||||||| ||| ||||||     
T  7129924 caactcttcctcccaagaaaacaacctcctacaccacttacacgcctcaccattctctccccaccctataataaacatatgctctacaattgccaatttt 7130023  T
Q  151 t-atcagctaactcgtataatcttctataagtatc--tcagggacatatcatccaatcaggaatctaacaaaaacaaagtagaattcccatcacacatct 247  Q
    | ||| |||||||| |||||||||| | || | ||  |||||  |||| || |||| |||| ||||||| |||||| ||||||| || |||||| ||  |    
T  7130024 ttatccgctaactcatataatcttccaaaactctccttcaggagcataccacccaaccagggatctaaccaaaacatagtagaagtcgcatcacccacgt 7130123  T
Q  248 tccaactaatattatctctcagccactcaccatccacctgacccacgccctctctgatacttctcatagtctg 320  Q
    ||  |||||| |||||||||| |||| || ||||||||||||||||||||| ||| |||||| ||||||||||    
T  7130124 tctgactaatgttatctctcaaccacccaacatccacctgacccacgccctttcttatacttttcatagtctg 7130196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 46 - 273
Target Start/End: Complemental strand, 6820907 - 6820676
Alignment:
Q  46 ctcaccaacttttcctcccaagcaaataacctcctacgccacttccacttctcaccgttcaccccccaccccataatgaacacattctctacatttgtca 145  Q
    |||||||||| ||||| |||||||||||||||| ||||| ||||||||| |||||||||||| ||||| |   || |||||| |||||||||| ||| ||    
T  6820907 ctcaccaactcttccttccaagcaaataacctcatacgctacttccactcctcaccgttcactccccatcatgtagtgaacatattctctacagttgcca 6820808  T
Q  146 attta-tatcagctaactcgtataatcttctataagtat--ctcagggacatatcatcc-aatcaggaatctaacaaaaacaaagtagaattcccatcac 241  Q
    ||||| | ||||||||||| ||||||||||||||| |||  |||| || || | ||||| || || | ||||||| |||||| |||||| ||||||||||    
T  6820807 atttattgtcagctaactcatataatcttctataactatccctcaagggcaaaccatccaaaccaaggatctaaccaaaacagagtagagttcccatcac 6820708  T
Q  242 acatcttccaactaatattatctctcagccac 273  Q
     ||  ||| ||||||| |||||||||| ||||    
T  6820707 ccacgttctaactaatgttatctctcaaccac 6820676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 375 - 410
Target Start/End: Original strand, 36281153 - 36281188
Alignment:
Q  375 aacaagcacataccaccatgagcacataacaccata 410  Q
    ||||||||||||||||||| ||||||||||||||||    
T  36281153 aacaagcacataccaccataagcacataacaccata 36281188  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 58 - 93
Target Start/End: Complemental strand, 48352193 - 48352158
Alignment:
Q  58 tcctcccaagcaaataacctcctacgccacttccac 93  Q
    ||||||||||||||||||||||| ||||||||||||    
T  48352193 tcctcccaagcaaataacctcctccgccacttccac 48352158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 106
Target Start/End: Original strand, 26955807 - 26955856
Alignment:
Q  57 ttcctcccaagcaaataacctcctacgccacttccacttctcaccgttca 106  Q
    ||||||||||||||| |||||| |||||||||| ||| ||||||| ||||    
T  26955807 ttcctcccaagcaaacaacctcttacgccactttcacgtctcaccattca 26955856  T

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Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 197 - 320
Target Start/End: Complemental strand, 1072606 - 1072483
Alignment:
Q  197 catccaatcaggaatctaacaaaaacaaagtagaattcccatcacacatcttccaactaatattatctctcagccactcaccatccacctgacccacgcc 296  Q
    ||||||| |||  ||||||| ||||||||||| ||||| ||| || || ||||| |||||||||||||||||| ||| | |||||||| || || || ||    
T  1072606 catccaaccagagatctaaccaaaacaaagtaaaattctcattacccaccttccgactaatattatctctcagtcaccctccatccacgtgtcctactcc 1072507  T
Q  297 ctctctgatacttctcatagtctg 320  Q
    |||||| ||| |||||||||||||    
T  1072506 ctctctaatatttctcatagtctg 1072483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 120
Target Start/End: Complemental strand, 1072755 - 1072686
Alignment:
Q  51 caacttttcctcccaagcaaataacctcctacgccacttccacttctcaccgttcaccccccaccccata 120  Q
    ||||| |||||||||| | | |||||||||||| ||||| |||  |||||| ||||| ||||||||||||    
T  1072755 caactcttcctcccaaacgagtaacctcctacgacacttgcacgcctcaccattcacaccccaccccata 1072686  T

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Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 33178054 - 33178373
Alignment:
Q  1 tccaacctgtaaaaccattggaattaaccgcccaacacagtctctctcaccaacttttcctcccaagcaaataacctcctacgccacttccacttctcac 100  Q
    ||||||||||||||| | |||| |||  ||||| |||||  ||| |||||||||| |||||||||||| || ||||||  |||||||||||||  ||| |    
T  33178054 tccaacctgtaaaacaactggagttagacgccctacaca--ctccctcaccaactcttcctcccaagcgaacaacctctgacgccacttccacgcctctc 33178151  T
Q  101 cgttcaccccccaccccataatgaacacattctctacatttgtcaatttatatcagctaactcgtataatcttctataagtatc--tcagggacatatca 198  Q
    | |||| |||||||||||||   |||| || | | ||| ||||||| ||||  ||| ||||||||| ||||||  | ||  |||  |||| | |||| ||    
T  33178152 cattcagcccccaccccatagaaaacatatccaccacagttgtcaacttattgcagttaactcgtaaaatctttgaaaacaatccttcagaggcatacca 33178251  T
Q  199 tccaatcaggaatctaacaaaaacaaagtagaattcccatcacacatcttccaactaatattatctctcagccactcaccatccacctgacccacgccct 298  Q
    ||||| || | ||||| | |||||| |||||| || ||||| | || |||||  ||||||||||| || | |||| | |||||||| || |||||  |||    
T  33178252 tccaaccacggatctacccaaaacagagtagagtttccatcccccaccttccggctaatattatcccttaaccaccctccatccacttgtcccacctcct 33178351  T
Q  299 ctctgatacttctcatagtctg 320  Q
    |||| ||| |||| ||| ||||    
T  33178352 ctctaatatttcttatactctg 33178373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 56 - 113
Target Start/End: Original strand, 15038747 - 15038804
Alignment:
Q  56 tttcctcccaagcaaataacctcctacgccacttccacttctcaccgttcacccccca 113  Q
    |||||||||||||||| ||| |||||| ||||||||||  |||||||||||| |||||    
T  15038747 tttcctcccaagcaaacaacgtcctacaccacttccacggctcaccgttcactcccca 15038804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 58 - 93
Target Start/End: Original strand, 27515880 - 27515915
Alignment:
Q  58 tcctcccaagcaaataacctcctacgccacttccac 93  Q
    |||||||| |||||||||||||||||||||||||||    
T  27515880 tcctcccacgcaaataacctcctacgccacttccac 27515915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 93
Target Start/End: Complemental strand, 42918063 - 42918027
Alignment:
Q  57 ttcctcccaagcaaataacctcctacgccacttccac 93  Q
    |||||||||||||||||||||||| ||||| ||||||    
T  42918063 ttcctcccaagcaaataacctcctccgccatttccac 42918027  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 58 - 93
Target Start/End: Original strand, 48710362 - 48710397
Alignment:
Q  58 tcctcccaagcaaataacctcctacgccacttccac 93  Q
    |||||||| |||||||||||||||||||||||||||    
T  48710362 tcctcccacgcaaataacctcctacgccacttccac 48710397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 108
Target Start/End: Original strand, 16305349 - 16305411
Alignment:
Q  46 ctcaccaacttttcctcccaagcaaataacctcctacgccacttccacttctcaccgttcacc 108  Q
    |||| ||||| |||||||||||| ||||||||||||| | ||||||||  |||||| ||||||    
T  16305349 ctcagcaactcttcctcccaagcgaataacctcctacacaacttccacacctcaccattcacc 16305411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 93
Target Start/End: Original strand, 13216975 - 13217011
Alignment:
Q  57 ttcctcccaagcaaataacctcctacgccacttccac 93  Q
    |||||||||||| ||||||||||||| ||||||||||    
T  13216975 ttcctcccaagctaataacctcctactccacttccac 13217011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 113
Target Start/End: Original strand, 2845423 - 2845488
Alignment:
Q  48 caccaacttttcctcccaagcaaataacctcctacgccacttccacttctcaccgttcacccccca 113  Q
    ||||||||| || || |||||||| || ||||| |||||||||| | ||||||||||||| |||||    
T  2845423 caccaacttctcatctcaagcaaacaatctccttcgccacttcctcgtctcaccgttcactcccca 2845488  T

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