View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7168_high_1 (Length: 338)

Name: NF7168_high_1
Description: NF7168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7168_high_1
NF7168_high_1
[»] chr5 (2 HSPs)
chr5 (1-245)||(33560262-33560506)
chr5 (278-325)||(33560215-33560262)
[»] chr2 (25 HSPs)
chr2 (1-241)||(39389625-39389865)
chr2 (1-219)||(39136598-39136816)
chr2 (1-219)||(39390465-39390683)
chr2 (112-230)||(39391029-39391147)
chr2 (116-241)||(38792909-38793034)
chr2 (95-241)||(39221633-39221779)
chr2 (1-204)||(39222300-39222503)
chr2 (3-178)||(39390257-39390432)
chr2 (1-195)||(39415906-39416100)
chr2 (112-178)||(39221180-39221246)
chr2 (144-210)||(39415161-39415227)
chr2 (117-189)||(39137291-39137363)
chr2 (267-315)||(39193077-39193125)
chr2 (267-315)||(39198757-39198805)
chr2 (94-178)||(39390138-39390222)
chr2 (266-309)||(39390697-39390740)
chr2 (116-226)||(38792672-38792782)
chr2 (118-192)||(39136877-39136951)
chr2 (114-240)||(39451413-39451539)
chr2 (1-74)||(39390927-39391000)
chr2 (140-225)||(39415283-39415368)
chr2 (118-219)||(39473931-39474032)
chr2 (116-196)||(38792443-38792523)
chr2 (155-219)||(39422180-39422244)
chr2 (115-219)||(39451686-39451790)
[»] chr7 (2 HSPs)
chr7 (1-219)||(19806959-19807177)
chr7 (118-205)||(19807225-19807312)


Alignment Details
Target: chr5 (Bit Score: 161; Significance: 8e-86; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 33560506 - 33560262
Alignment:
Q  1 cttctctttagagtcaagttcttgaagttgtcctttcaatggcctcaattttgatttgacctcatccaccatgcttttaacaagctcctcttcagattcc 100  Q
    |||||||||||| |||||||||||||||||| ||||||| | ||||||||||||||||| ||| |||||||||||||  | | ||| | ||| | |||||    
T  33560506 cttctctttagaatcaagttcttgaagttgttctttcaacgacctcaattttgatttgagctcctccaccatgctttcgaaatgcttcgctttatattcc 33560407  T
Q  101 atctccttcatacggccttcaaattctttctcctttgactcatgctccatcaatcggccttcaagttgcttctcttttaactgaagctccttcatttggc 200  Q
    |||||||||| || |||||||||||| ||||||||||||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  33560406 atctccttcacacagccttcaaattccttctcctttgactcatgctcattcaatcggccttcaagttgcttctcttttgactgaagctccttcatttggc 33560307  T
Q  201 tttcacaatgctcctgtttcaatacatgctccttcatttggtttt 245  Q
    |||| ||||||||||||||||||||||||||||||||||||||||    
T  33560306 tttctcaatgctcctgtttcaatacatgctccttcatttggtttt 33560262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 278 - 325
Target Start/End: Complemental strand, 33560262 - 33560215
Alignment:
Q  278 tcaaagtccttctcttttgattccaactccttcacccggtcttgatgt 325  Q
    ||||| ||||||||||||||||| ||||||||||||||| ||| ||||    
T  33560262 tcaaaatccttctcttttgattcaaactccttcacccggccttcatgt 33560215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 93; Significance: 3e-45; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 39389625 - 39389865
Alignment:
Q  1 cttctctttagagtcaagttcttgaagttgtcctttcaatggcctcaattttgatttgacctcatccaccatgcttttaacaagctcctcttcagattcc 100  Q
    ||||||||| ||||||| ||| |||| |||| |||||||| |||||||||||||||||| |||  ||| ||||||||  | | ||| || || |||||||    
T  39389625 cttctctttggagtcaaattcctgaaattgtactttcaatagcctcaattttgatttgagctccaccatcatgctttcgaaatgcttctttttagattcc 39389724  T
Q  101 atctccttcatacggccttcaaattctttctcctttgactcatgctccatcaatcggccttcaagttgcttctcttttaactgaagctccttcatttggc 200  Q
    | |||||||    | ||||||||||| ||||||||||| |||||||||  |||| || |||||||||||||| ||||| ||| |||||||||||||||||    
T  39389725 agctccttcgcttgaccttcaaattccttctcctttgattcatgctcctgcaattggtcttcaagttgcttcccttttgactcaagctccttcatttggc 39389824  T
Q  201 tttcacaatgctcctgtttcaatacatgctccttcatttgg 241  Q
    ||| | |||||| |||||||||||| ||||||| |||||||    
T  39389825 ttttataatgcttctgtttcaatacctgctcctccatttgg 39389865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 39136816 - 39136598
Alignment:
Q  1 cttctctttagagtcaagttcttgaagttgtcctttcaatggcctcaattttgatttgacctcatccaccatgcttttaacaagctcctcttcagattcc 100  Q
    ||||||||||||| ||||||| | || |||||||||||||||| |||||||||  |||| ||| ||||||  |||||| | | ||  ||||| |||||||    
T  39136816 cttctctttagaggcaagttccttaatttgtcctttcaatggcatcaattttgcattgatctcctccacctcgcttttgaaatgcctctctttagattcc 39136717  T
Q  101 atctccttcatacggccttcaaattctttctcctttgactcatgctccatcaatcggccttcaagttgcttctcttttaactgaagctccttcatttggc 200  Q
    | ||| ||||| ||||||||||||||||| || |   | ||||||||| |||||||||||||||||||| |||||||  ||| ||||||||| || ||||    
T  39136716 agctcattcatccggccttcaaattctttttcttccaattcatgctccttcaatcggccttcaagttgcctctctttcgactcaagctccttaatatggc 39136617  T
Q  201 tttcacaatgctcctgttt 219  Q
    ||||  |||||| ||||||    
T  39136616 tttcgaaatgcttctgttt 39136598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 39390465 - 39390683
Alignment:
Q  1 cttctctttagagtcaagttcttgaagttgtcctttcaatggcctcaattttgatttgacctcatccaccatgcttttaacaagctcctcttcagattcc 100  Q
    |||||||||||| |||||||| | || ||||||||||||| |||||  || || ||||| ||| |||||   ||||| || | ||| |  || |||||||    
T  39390465 cttctctttagactcaagttccttaacttgtcctttcaattgcctctcttctgttttgagctcctccacttggctttcaaaatgcttccttttagattcc 39390564  T
Q  101 atctccttcatacggccttcaaattctttctcctttgactcatgctccatcaatcggccttcaagttgcttctcttttaactgaagctccttcatttggc 200  Q
    |  ||||||||  |||||||||||||| |||| ||||| ||||||||| ||| ||||| |||| |||||||||||||| ||| || ||||||||||||||    
T  39390565 agttccttcatttggccttcaaattctctctcttttgattcatgctccttcactcggctttcatgttgcttctcttttgactcaaactccttcatttggc 39390664  T
Q  201 tttcacaatgctcctgttt 219  Q
    ||||| |||||| ||||||    
T  39390665 tttcaaaatgcttctgttt 39390683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 112 - 230
Target Start/End: Original strand, 39391029 - 39391147
Alignment:
Q  112 acggccttcaaattctttctcctttgactcatgctccatcaatcggccttcaagttgcttctcttttaactgaagctccttcatttggctttcacaatgc 211  Q
    ||||||||||||||| ||||||||| | ||||||||| ||||| ||||||||||||| ||||||||  ||| ||||||||||||||||||||||||||||    
T  39391029 acggccttcaaattccttctcctttaattcatgctccttcaattggccttcaagttgtttctctttggactcaagctccttcatttggctttcacaatgc 39391128  T
Q  212 tcctgtttcaatacatgct 230  Q
    | ||| |||||||| ||||    
T  39391129 ttctgcttcaatacctgct 39391147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 116 - 241
Target Start/End: Complemental strand, 38793034 - 38792909
Alignment:
Q  116 ccttcaaattctttctcctttgactcatgctccatcaatcggccttcaagttgcttctcttttaactgaagctccttcatttggctttcacaatgctcct 215  Q
    ||||||||||||  || |||||| ||||||||| |||  ||| |||||  ||| |||||||| |||| ||| |||||||||||||||||  |||||| ||    
T  38793034 ccttcaaattctcgcttctttgagtcatgctccttcatccggtcttcattttggttctctttcaactcaagttccttcatttggctttcgaaatgcttct 38792935  T
Q  216 gtttcaatacatgctccttcatttgg 241  Q
    ||||||||||  ||||||||||||||    
T  38792934 gtttcaataccagctccttcatttgg 38792909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 95 - 241
Target Start/End: Complemental strand, 39221779 - 39221633
Alignment:
Q  95 gattccatctccttcatacggccttcaaattctttctcctttgactcatgctccatcaatcggccttcaagttgcttctcttttaactgaagctccttca 194  Q
    |||||||  ||||||||  |||||||||||||| |||| |||||  |||||||| |||  | ||||||| |||||||||||||| ||| || ||||||||    
T  39221779 gattccaaatccttcatttggccttcaaattctctctcttttgatccatgctccttcacccagccttcatgttgcttctcttttgactcaaactccttca 39221680  T
Q  195 tttggctttcacaatgctcctgtttcaatacatgctccttcatttgg 241  Q
    | ||||||||| |||| |  ||||| ||  || ||||||||||||||    
T  39221679 tctggctttcaaaatgtttttgttttaactcaagctccttcatttgg 39221633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 39222503 - 39222300
Alignment:
Q  1 cttctctttagagtcaagttcttgaagttgtcctttcaatggcctcaattttgatttgacctcatccaccatgcttttaacaa-gctcctcttcagattc 99  Q
    |||||||||||| |||| ||| | ||  |||||||||||| |||||  ||||||||||| ||| |||||  || |||| | || ||| || ||  |||||    
T  39222503 cttctctttagactcaatttccttaacctgtcctttcaattgcctctcttttgatttgaactcctccact-tgattttcaaaatgcttctttttggattc 39222405  T
Q  100 catctccttcatacggccttcaaattctttctcctttgactcatgctccatcaatcggccttcaagttgcttctcttttaactgaagctccttcatttgg 199  Q
    ||  |||||||   ||||||| ||| || |||| ||||| | ||||||| ||| | ||||||||||||||||||||||  ||| || |||||||||||||    
T  39222404 cagttccttcagttggccttcgaatcctctctcttttgatttatgctccttcacttggccttcaagttgcttctctttagactcaaactccttcatttgg 39222305  T
Q  200 ctttc 204  Q
    |||||    
T  39222304 ctttc 39222300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 178
Target Start/End: Original strand, 39390257 - 39390432
Alignment:
Q  3 tctctttagagtcaagttcttgaagttgtcctttcaatggcctcaattttgatttgacctcatccaccatgcttttaacaagctcctcttcagattccat 102  Q
    ||||| |||| |||||||| | || || |||||||||| || ||| ||||| ||||| ||| |||||   ||||| || | ||| |  || ||||||||     
T  39390257 tctctctagactcaagttccttaacttctcctttcaattgcttcacttttgttttgagctcctccacttggctttcaaaatgcttccttttagattccag 39390356  T
Q  103 ctccttcatacggccttcaaattctttctcctttgactcatgctccatcaatcggccttcaagttgcttctctttt 178  Q
     ||||||||  |||||||||||||| |||| |||||  |||||||| ||| ||||| |||| ||||||||||||||    
T  39390357 ttccttcatttggccttcaaattctctctcttttgatccatgctccttcactcggctttcatgttgcttctctttt 39390432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 39415906 - 39416100
Alignment:
Q  1 cttctctttagagtcaagttcttgaagttgtcctttcaatggcctcaattttgatttgacctcatccaccatgcttttaacaagctcctcttcagattcc 100  Q
    ||||||||||||  ||||||| | ||  ||||||||||||||| |||||||||  |||| ||| ||||||  | | || | |  |  ||||| |||||||    
T  39415906 cttctctttagaagcaagttccttaaactgtcctttcaatggcatcaattttgtattgagctcctccacccagttattgaaatacctctctttagattcc 39416005  T
Q  101 atctccttcatacggccttcaaattctttctcctttgactcatgctccatcaatcggccttcaagttgcttctcttttaactgaagctccttcat 195  Q
    | ||| ||||  ||| ||||||||||||| || |  || ||||||||| ||||| ||||| ||||||||||||| ||  ||| ||||||||||||    
T  39416006 agctcattcactcggtcttcaaattctttttcttcggattcatgctccttcaattggcctccaagttgcttctcattagactcaagctccttcat 39416100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 112 - 178
Target Start/End: Complemental strand, 39221246 - 39221180
Alignment:
Q  112 acggccttcaaattctttctcctttgactcatgctccatcaatcggccttcaagttgcttctctttt 178  Q
    ||||||||||| ||| ||||||||||| ||||||||| ||||||| ||||||| || ||||| ||||    
T  39221246 acggccttcaagttccttctcctttgattcatgctccttcaatcgaccttcaaattccttctgtttt 39221180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 210
Target Start/End: Original strand, 39415161 - 39415227
Alignment:
Q  144 gctccatcaatcggccttcaagttgcttctcttttaactgaagctccttcatttggctttcacaatg 210  Q
    ||||| ||| ||| |||||| |||||||||||||| ||| ||||||||||||| |||||||| ||||    
T  39415161 gctccttcactcgaccttcatgttgcttctcttttgactcaagctccttcattcggctttcaaaatg 39415227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 189
Target Start/End: Complemental strand, 39137363 - 39137291
Alignment:
Q  117 cttcaaattctttctcctttgactcatgctccatcaatcggccttcaagttgcttctcttttaactgaagctc 189  Q
    ||||||||||| || | ||||| |||||||||||||  ||||||||| |||| ||||||||| | ||||||||    
T  39137363 cttcaaattctctcacttttgattcatgctccatcacccggccttcatgttgtttctcttttgaatgaagctc 39137291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 315
Target Start/End: Original strand, 39193077 - 39193125
Alignment:
Q  267 tcatttggcactcaaagtccttctcttttgattccaactccttcacccg 315  Q
    |||||||||| ||||| ||||||||||||||||| |||| |||||||||    
T  39193077 tcatttggcattcaaattccttctcttttgattcaaacttcttcacccg 39193125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 315
Target Start/End: Original strand, 39198757 - 39198805
Alignment:
Q  267 tcatttggcactcaaagtccttctcttttgattccaactccttcacccg 315  Q
    |||||||||| ||||| ||||||||||||||||| |||| |||||||||    
T  39198757 tcatttggcattcaaattccttctcttttgattcaaacttcttcacccg 39198805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 178
Target Start/End: Original strand, 39390138 - 39390222
Alignment:
Q  94 agattccatctccttcatacggccttcaaattctttctcctttgactcatgctccatcaatcggccttcaagttgcttctctttt 178  Q
    ||||||||  ||||||||  |||||||||| ||| |||| || || ||||||||| ||| ||||| |||| ||||||||||||||    
T  39390138 agattccagttccttcatttggccttcaaaatctctctctttggattcatgctccttcactcggctttcatgttgcttctctttt 39390222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 266 - 309
Target Start/End: Original strand, 39390697 - 39390740
Alignment:
Q  266 atcatttggcactcaaagtccttctcttttgattccaactcctt 309  Q
    ||||||||||| ||||| ||||||||||||||||| ||||||||    
T  39390697 atcatttggcattcaaattccttctcttttgattcaaactcctt 39390740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 226
Target Start/End: Complemental strand, 38792782 - 38792672
Alignment:
Q  116 ccttcaaattctttctcctttgactcatgctccatcaatcggccttcaagttgcttctcttttaactgaagctccttcatttggctttcacaatgctcct 215  Q
    |||||||||||| |||| ||||| || |||||| |||  |||||||||  |||||| |||||  ||| ||| ||||||||| || ||||  || ||| ||    
T  38792782 ccttcaaattctctctcttttgattcgtgctccttcacccggccttcatattgcttttctttcgactcaaggtccttcattcggttttcgaaaagcttct 38792683  T
Q  216 gtttcaataca 226  Q
    |||||||||||    
T  38792682 gtttcaataca 38792672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 192
Target Start/End: Complemental strand, 39136951 - 39136877
Alignment:
Q  118 ttcaaattctttctcctttgactcatgctccatcaatcggccttcaagttgcttctcttttaactgaagctcctt 192  Q
    |||||||||| |||| |||||  |||||||| |||  ||||||||| | |||||||||||| ||| |||||||||    
T  39136951 ttcaaattctctctcttttgatgcatgctccttcacccggccttcatgctgcttctcttttgactcaagctcctt 39136877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 240
Target Start/End: Complemental strand, 39451539 - 39451413
Alignment:
Q  114 ggccttcaaattctttctcctttgactcatgctccatcaatcggccttcaagttgcttctcttttaactgaagctccttcatttggctttcacaatgctc 213  Q
    |||||||||| ||| | || ||||| ||||||||| |||| |||| ||||||||||||||| ||| | | ||| |||| |||  |||||||| |||| |     
T  39451539 ggccttcaaactctctttcttttgattcatgctccttcaaccggctttcaagttgcttctcatttgagtcaaggtcctccatccggctttcataatgttt 39451440  T
Q  214 ctgtttcaatacatgctccttcatttg 240  Q
    |||||| ||| |   ||||||||||||    
T  39451439 ctgttttaattccaactccttcatttg 39451413  T

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Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 39390927 - 39391000
Alignment:
Q  1 cttctctttagagtcaagttcttgaagttgtcctttcaatggcctcaattttgatttgacctcatccaccatgc 74  Q
    ||||||||||||||||||||| | || |||| ||||||| | ||||| | ||||||||| ||| |||| |||||    
T  39390927 cttctctttagagtcaagttcctcaacttgttctttcaaagacctcattcttgatttgagctcctccatcatgc 39391000  T

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Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 225
Target Start/End: Original strand, 39415283 - 39415368
Alignment:
Q  140 tcatgctccatcaatcggccttcaagttgcttctcttttaactgaagctccttcatttggctttcacaatgctcctgtttcaatac 225  Q
    ||||||||| |||||||| |||||  ||||||  ||||  ||| |||||| |||| |||||||||  |||||| ||||||||||||    
T  39415283 tcatgctccttcaatcggacttcatcttgctttgctttcgactcaagctctttcacttggctttctaaatgcttctgtttcaatac 39415368  T

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Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 219
Target Start/End: Original strand, 39473931 - 39474032
Alignment:
Q  118 ttcaaattctttctcctttgactcatgctccatcaatcggccttcaagttgcttctcttttaactgaagctccttcatttggctttcacaatgctcctgt 217  Q
    |||||||||| |||  ||||| | |||||||  || |||||| ||||| |||||||||||| ||| ||||| || |||  |||||||| |||||| ||||    
T  39473931 ttcaaattctctctgttttgatttatgctcctccactcggccatcaagctgcttctcttttgacttaagcttctccatgcggctttcaaaatgcttctgt 39474030  T
Q  218 tt 219  Q
    ||    
T  39474031 tt 39474032  T

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Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 196
Target Start/End: Complemental strand, 38792523 - 38792443
Alignment:
Q  116 ccttcaaattctttctcctttgactcatgctccatcaatcggccttcaagttgcttctcttttaactgaagctccttcatt 196  Q
    |||||||||||| ||   ||||| ||||||||| |||  || |||||| | |||||||||||||||| ||| |||||||||    
T  38792523 ccttcaaattctctcgtttttgattcatgctccttcacccgaccttcatgctgcttctcttttaactcaaggtccttcatt 38792443  T

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Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 219
Target Start/End: Original strand, 39422180 - 39422244
Alignment:
Q  155 cggccttcaagttgcttctcttttaactgaagctccttcatttggctttcacaatgctcctgttt 219  Q
    ||||| |||||||||||||||||  ||| ||| ||||||||| |||||||| | |||| ||||||    
T  39422180 cggccatcaagttgcttctctttagactcaaggtccttcattcggctttcaaattgcttctgttt 39422244  T

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Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 219
Target Start/End: Complemental strand, 39451790 - 39451686
Alignment:
Q  115 gccttcaaattctttctcctttgactcatgctccatcaatcggccttcaagttgcttctcttttaactgaagctccttcatttggctttcacaatgctcc 214  Q
    ||||||||||||| || | ||||| |||||||||||||  ||||| ||| ||||| |||| ||||| | ||| |||| |||  |||||||| |||| | |    
T  39451790 gccttcaaattctctcacttttgattcatgctccatcacccggccctcatgttgcctctcatttaagtcaaggtcctccatccggctttcataatgtttc 39451691  T
Q  215 tgttt 219  Q
    |||||    
T  39451690 tgttt 39451686  T

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Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 19807177 - 19806959
Alignment:
Q  1 cttctctttagagtcaagttcttgaagttgtcctttcaatggcctcaattttgatttgacctcatccaccatgcttttaacaagctcctcttcagattcc 100  Q
    ||||||||||||| |||| || | ||||||||||||||||||| |||||||||  |||| ||| ||||||  |||||| | | ||  ||||| |||||||    
T  19807177 cttctctttagaggcaagctccttaagttgtcctttcaatggcatcaattttgtattgagctcctccacctcgcttttgaaatgcctctctttagattcc 19807078  T
Q  101 atctccttcatacggccttcaaattctttctcctttgactcatgctccatcaatcggccttcaagttgcttctcttttaactgaagctccttcatttggc 200  Q
    | ||| ||||  ||||||||||||||||  || | ||| ||||||||| |||||||||||||||||||| |||||||  ||| ||||||||| || ||||    
T  19807077 agctcattcactcggccttcaaattcttgttcttctgattcatgctccttcaatcggccttcaagttgcctctctttcgactcaagctccttaatatggc 19806978  T
Q  201 tttcacaatgctcctgttt 219  Q
    ||||  |||||| ||||||    
T  19806977 tttcgaaatgcttctgttt 19806959  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 118 - 205
Target Start/End: Complemental strand, 19807312 - 19807225
Alignment:
Q  118 ttcaaattctttctcctttgactcatgctccatcaatcggccttcaagttgcttctcttttaactgaagctccttcatttggctttca 205  Q
    |||||||||| |||| |||||  |||||||| |||  ||||||||| | |||||||||||| ||| ||||||||| ||| || |||||    
T  19807312 ttcaaattctctctcttttgatgcatgctccttcatccggccttcatgctgcttctcttttgactcaagctccttgattcggttttca 19807225  T

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