View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7168_high_5 (Length: 215)

Name: NF7168_high_5
Description: NF7168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7168_high_5
NF7168_high_5
[»] chr8 (1 HSPs)
chr8 (64-191)||(31286976-31287103)
[»] chr5 (2 HSPs)
chr5 (76-199)||(6051796-6051919)
chr5 (76-199)||(12697346-12697469)
[»] chr4 (2 HSPs)
chr4 (76-199)||(43460623-43460746)
chr4 (76-137)||(26336021-26336082)
[»] chr6 (1 HSPs)
chr6 (101-199)||(24064595-24064693)
[»] chr1 (3 HSPs)
chr1 (75-132)||(14235978-14236035)
chr1 (75-132)||(14237347-14237404)
chr1 (77-165)||(19534096-19534183)
[»] chr3 (2 HSPs)
chr3 (75-133)||(11617443-11617501)
chr3 (77-165)||(36864528-36864615)
[»] chr7 (1 HSPs)
chr7 (64-133)||(25426949-25427018)
[»] chr2 (1 HSPs)
chr2 (86-132)||(39599295-39599341)


Alignment Details
Target: chr8 (Bit Score: 116; Significance: 3e-59; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 64 - 191
Target Start/End: Complemental strand, 31287103 - 31286976
Alignment:
Q  64 ggggatgtatcaaatgagagggtgagaggaccaaataatagccattagatttaattcaacggttgagatagtgtttaattaatatgcacatgtttccttt 163  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  31287103 ggggatgtatcaaatgagagggtgagaggactaaataatagccattagatttaagtcaacggttgagatagtgtttaattagtatgcacatgtttccttt 31287004  T
Q  164 tcatttagtttcacggtttccccacgcg 191  Q
    ||||||||||||||||||||||||||||    
T  31287003 tcatttagtttcacggtttccccacgcg 31286976  T

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Target: chr5 (Bit Score: 116; Significance: 3e-59; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 76 - 199
Target Start/End: Original strand, 6051796 - 6051919
Alignment:
Q  76 aatgagagggtgagaggaccaaataatagccattagatttaattcaacggttgagatagtgtttaattaatatgcacatgtttccttttcatttagtttc 175  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6051796 aatgagagggtgagaggaccaaatgatagccattagatttaagtcaacggttgagatagtgtttaattaatatgcacatgtttccttttcatttagtttc 6051895  T
Q  176 acggtttccccacgcgccattcat 199  Q
    ||||||||||||||||||||||||    
T  6051896 acggtttccccacgcgccattcat 6051919  T

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Target: chr5; HSP #2
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 76 - 199
Target Start/End: Original strand, 12697346 - 12697469
Alignment:
Q  76 aatgagagggtgagaggaccaaataatagccattagatttaattcaacggttgagatagtgtttaattaatatgcacatgtttccttttcatttagtttc 175  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  12697346 aatgagagggtgagaggaccaaataatagccattagatttaagtcaacggttaagatagtgtttaattaatatgcacatgtttccttttcatttagtttc 12697445  T
Q  176 acggtttccccacgcgccattcat 199  Q
    |||||||| |||||||||||||||    
T  12697446 acggtttctccacgcgccattcat 12697469  T

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Target: chr4 (Bit Score: 112; Significance: 8e-57; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 76 - 199
Target Start/End: Original strand, 43460623 - 43460746
Alignment:
Q  76 aatgagagggtgagaggaccaaataatagccattagatttaattcaacggttgagatagtgtttaattaatatgcacatgtttccttttcatttagtttc 175  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  43460623 aatgagagggtgagaggaccaaataatagccattagatttaagtcatcggttgagatagtgtttagttaatatgcacatgtttccttttcatttagtttc 43460722  T
Q  176 acggtttccccacgcgccattcat 199  Q
    ||||||||||||||||||||||||    
T  43460723 acggtttccccacgcgccattcat 43460746  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 76 - 137
Target Start/End: Original strand, 26336021 - 26336082
Alignment:
Q  76 aatgagagggtgagaggaccaaataatagccattagatttaattcaacggttgagatagtgt 137  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  26336021 aatgagagggtgagaggaccaaataatagccattagatttaagtcatcggttgagatagtgt 26336082  T

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Target: chr6 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 101 - 199
Target Start/End: Complemental strand, 24064693 - 24064595
Alignment:
Q  101 atagccattagatttaattcaacggttgagatagtgtttaattaatatgcacatgtttccttttcatttagtttcacggtttccccacgcgccattcat 199  Q
    ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24064693 atagccattagatttaagtcatcggttgagatagtgtttaattaatatgcacatgtttccttttcatttagtttcacggtttccccacgcgccattcat 24064595  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 132
Target Start/End: Original strand, 14235978 - 14236035
Alignment:
Q  75 aaatgagagggtgagaggaccaaataatagccattagatttaattcaacggttgagat 132  Q
    |||||||||||||||||||  |||||| ||||||||||| | ||||||||||||||||    
T  14235978 aaatgagagggtgagaggagtaaataacagccattagatctgattcaacggttgagat 14236035  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 75 - 132
Target Start/End: Complemental strand, 14237404 - 14237347
Alignment:
Q  75 aaatgagagggtgagaggaccaaataatagccattagatttaattcaacggttgagat 132  Q
    |||||||||||||||||||  |||||| | ||||||||| | ||||||| ||||||||    
T  14237404 aaatgagagggtgagaggagtaaataacatccattagatcttattcaacagttgagat 14237347  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 165
Target Start/End: Original strand, 19534096 - 19534183
Alignment:
Q  77 atgagagggtgagaggaccaaataatagccattagatttaattcaacggttgagatagtgtttaattaatatgcacatgtttccttttc 165  Q
    |||||||||||||||||  |||||||| |||| ||||||||  ||||||||  |||  ||||| |||||| |||||| |||| ||||||    
T  19534096 atgagagggtgagaggagtaaataataaccatcagatttaaaccaacggttaggattatgttt-attaatctgcacacgttttcttttc 19534183  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 75 - 133
Target Start/End: Original strand, 11617443 - 11617501
Alignment:
Q  75 aaatgagagggtgagaggaccaaataatagccattagatttaattcaacggttgagata 133  Q
    |||||||||||||||||||  |||||| | ||||||||| | |||||||||||||||||    
T  11617443 aaatgagagggtgagaggagtaaataacaaccattagatctgattcaacggttgagata 11617501  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 165
Target Start/End: Complemental strand, 36864615 - 36864528
Alignment:
Q  77 atgagagggtgagaggaccaaataatagccattagatttaattcaacggttgagatagtgtttaattaatatgcacatgtttccttttc 165  Q
    |||||||||||||||||  |||||||| |||| ||||||||  ||||||||  |||  ||||| |||||| |||||| |||| ||||||    
T  36864615 atgagagggtgagaggagtaaataataaccatcagatttaaaccaacggttaggattatgttt-attaatctgcacacgttttcttttc 36864528  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 133
Target Start/End: Original strand, 25426949 - 25427018
Alignment:
Q  64 ggggatgtatcaaatgagagggtgagaggaccaaataatagccattagatttaattcaacggttgagata 133  Q
    ||||||||||||| |||||||||||||| |  |||||||||||| | |||| || | |||||||||||||    
T  25426949 ggggatgtatcaagtgagagggtgagagcattaaataatagccacttgattgaaataaacggttgagata 25427018  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 132
Target Start/End: Original strand, 39599295 - 39599341
Alignment:
Q  86 tgagaggaccaaataatagccattagatttaattcaacggttgagat 132  Q
    ||||||||  |||||| ||||||||||||| ||||||||||||||||    
T  39599295 tgagaggagtaaataacagccattagatttgattcaacggttgagat 39599341  T

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