View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7168_low_1 (Length: 532)
Name: NF7168_low_1
Description: NF7168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7168_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 472; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 1 - 516
Target Start/End: Complemental strand, 40326085 - 40325570
Alignment:
| Q |
1 |
attactattacaaggaatgcctaccttttctggatcaagattttccgaaacatcatccaagatcacaagaatttggtgatccatatttgctaatgtcaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
40326085 |
attactattacaaggaatgcctaccttttctggatcaagattttccgaaacatcatccaagatcacaagaatttggcgatccatatttgctaatgtcaag |
40325986 |
T |
|
| Q |
101 |
tatatttttcttgttcttccagcttcagtatttacgtcgaattccagattcaacacgttagcaatttcatcttgaatcctttttatgtttgggttttggg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40325985 |
tatatttttcttgttcttccagcttcagtatttacgtcgaattccagattcaactcgttagcaatttcatcttgaatcctttttatgtttgggttttggg |
40325886 |
T |
|
| Q |
201 |
acacattgataaataaaactacatcaaaaaactttgagtacttggctttctcggccactgctttcactaatgttgttttaccagagccgcgtttcccata |
300 |
Q |
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|||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40325885 |
acacattgataaataaaacttcatcaaaaaacttggagtacttggctttctcagccactgctttcactaatgttgttttaccagagccgcgtttcccata |
40325786 |
T |
|
| Q |
301 |
caatccaattttatatgaattatcactttgtagtgcctgcaaaagtctatctgaagcctctttggtagacgcgaaacagacaaaattttcagaagagaag |
400 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
40325785 |
caatccaattttatatgaattatcactttgcagtgcctgcaaaagtctatctgaagcctctttggtagacgcgaaacacacaaaattttcagaagagaag |
40325686 |
T |
|
| Q |
401 |
tgttctaaacttggaataggactggaaaatggcttgaattcacatcgaatattcaatgcttttagtttgtctagcattttatggcgatgtttcactgcac |
500 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
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| T |
40325685 |
tgttctaaacttggaataggactggaaaatagcttgaattcacatcggatattcaatgcctttaatttgtctagcattttatggcgatgtttcactgcac |
40325586 |
T |
|
| Q |
501 |
catcattcgtcaattg |
516 |
Q |
| |
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|||||||||||||||| |
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| T |
40325585 |
catcattcgtcaattg |
40325570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 1 - 482
Target Start/End: Complemental strand, 40310805 - 40310324
Alignment:
| Q |
1 |
attactattacaaggaatgcctaccttttctggatcaagattttccgaaacatcatccaagatcacaagaatttggtgatccatatttgctaatgtcaag |
100 |
Q |
| |
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||||||||||||||||||||||| | || |||||||||||||| |||||||||||||||||||||||||| | |||| | || ||||||||||| |
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| T |
40310805 |
attactattacaaggaatgcctaattcctcaagatcaagattttcccaaacatcatccaagatcacaagaattggacgatctgtgctttctaatgtcaag |
40310706 |
T |
|
| Q |
101 |
tatatttttcttgttcttccagcttcagtatttacgtcgaattccagattcaacacgttagcaatttcatcttgaatcctttttatgtttgggttttggg |
200 |
Q |
| |
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|||| || ||| | ||||||| ||||||| ||| ||| |||| |||| ||| | || ||| ||||||||||||||| ||||| ||||| ||||| | |
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| T |
40310705 |
tataattctctagctcttccaacttcagtgtttttgtcaaatttgagatccaaaaagtcagctatttcatcttgaatctgttttacatttggattttgag |
40310606 |
T |
|
| Q |
201 |
acacattgataaataaaactacatcaaaaaactttgagtacttggctttctcggccactgctttcactaatgttgttttaccagagccgcgtttcccata |
300 |
Q |
| |
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||||| |||||||||||||| || |||||| | | |||| |||||||||| ||||||||||| || || |||||||||||||||| || || ||||| |
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| T |
40310605 |
acacagtgataaataaaactgcagcaaaaaccctcaggtacctggctttctcagccactgctttaaccaactttgttttaccagagcctcgctttccata |
40310506 |
T |
|
| Q |
301 |
caatccaattttatatgaattatcactttgtagtgcctgcaaaagtctatctgaagcctctttggtagacgcgaaacagacaaaattttcagaagagaag |
400 |
Q |
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||||||||||||||| | ||| | ||| |||||||| ||||||||||||||||| |||||| ||| | | ||||| ||||||||| ||||||||||| |
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| T |
40310505 |
caatccaattttatagaacttacgattttctagtgcctccaaaagtctatctgaagtctcttttataggctcaaaacatacaaaatttccagaagagaag |
40310406 |
T |
|
| Q |
401 |
tgttctaaacttggaataggactggaaaatggcttgaattcacatcgaatattcaatgcttttagtttgtctagcattttat |
482 |
Q |
| |
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|| |||||||||||||| ||| || ||||||||| || |||||| ||||||||||| |||| ||||| |||||||||| |
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| T |
40310405 |
tgctctaaacttggaattggattgaaaaatggctcaaactcacatttgatattcaatgcctttaatttgttaagcattttat |
40310324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 224 - 434
Target Start/End: Original strand, 40257605 - 40257815
Alignment:
| Q |
224 |
tcaaaaaactttgagtacttggctttctcggccactgctttcactaatgttgttttaccagagccgcgtttcccatacaatccaattttatatgaattat |
323 |
Q |
| |
|
||||||| |||| | |||||||||||||| | ||||||||||| || |||||||||||||||| |||||||| ||||||||| |||| ||||| |
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| T |
40257605 |
tcaaaaatctttaaatacttggctttctcaccaactgctttcaccaactttgttttaccagagcccttcttcccatataatccaattatatagcaattac |
40257704 |
T |
|
| Q |
324 |
cactttgtagtgcctgcaaaagtctatctgaagcctctttggtagacgcgaaacagacaaaattttcagaagagaagtgttctaaacttggaataggact |
423 |
Q |
| |
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| ||| ||||||| ||||||| ||| ||||| |||| || ||| | || || ||||||||| | ||||||||| ||||||| |||||||| || |
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| T |
40257705 |
cgtcttgcagtgcctccaaaagttgatccgaagctactttagtggactcaaagcatacaaaatttccgaaagagaagtactctaaaccaggaatagggct |
40257804 |
T |
|
| Q |
424 |
ggaaaatggct |
434 |
Q |
| |
|
|||||||||| |
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| T |
40257805 |
agaaaatggct |
40257815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 40598053 - 40598125
Alignment:
| Q |
1 |
attactattacaaggaatgcctaccttttctggatcaagattttccgaaacatcatccaagatcacaagaatt |
73 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||||||| ||| || ||||||||| || ||||| |||||| |
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| T |
40598053 |
attactattacaaggaatgcctacatcttctggatcaaattttacccgaacatcatcgaaaatcactagaatt |
40598125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 285
Target Start/End: Complemental strand, 40277348 - 40277251
Alignment:
| Q |
188 |
tttgggttttgggacacattgataaataaaactacatcaaaaaactttgagtacttggctttctcggccactgctttcactaatgttgttttaccaga |
285 |
Q |
| |
|
|||||||||| || |||| ||| |||||||| | ||| ||||| ||| | |||||| ||||||| ||| ||||||||| |||| |||||||||||| |
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| T |
40277348 |
tttgggtttttggtcacactgacaaataaaatttcatgaaaaatatttaaatacttgactttctcacccattgctttcaccaatgctgttttaccaga |
40277251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 26118783 - 26118819
Alignment:
| Q |
38 |
agattttccgaaacatcatccaagatcacaagaattt |
74 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||| |
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|
| T |
26118783 |
agattttcccacacatcatccaagatcacaagaattt |
26118819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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