View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7168_low_4 (Length: 321)
Name: NF7168_low_4
Description: NF7168
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7168_low_4 |
 | |
|
| [»] scaffold0752 (1 HSPs) |
| | |
|
| [»] scaffold0544 (1 HSPs) |
| | |
|
| [»] scaffold0017 (1 HSPs) |
| | |
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| [»] scaffold0012 (1 HSPs) |
| | |
|
| [»] scaffold0073 (1 HSPs) |
| | |
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| [»] scaffold0007 (1 HSPs) |
| | |
|
| [»] scaffold0185 (1 HSPs) |
| | |
|
| [»] scaffold0738 (1 HSPs) |
| | |
|
| [»] scaffold0010 (1 HSPs) |
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|
| [»] scaffold0018 (1 HSPs) |
| | |
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| [»] scaffold0002 (1 HSPs) |
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| [»] scaffold0537 (1 HSPs) |
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|
| [»] scaffold0211 (1 HSPs) |
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|
| [»] scaffold0297 (1 HSPs) |
| | |
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| [»] scaffold0207 (1 HSPs) |
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| [»] scaffold0132 (2 HSPs) |
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| [»] scaffold0269 (1 HSPs) |
| | |
|
| [»] scaffold0547 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0752 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: scaffold0752
Description:
Target: scaffold0752; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 8 - 308
Target Start/End: Complemental strand, 5983 - 5683
Alignment:
| Q |
8 |
atggacatcaagggatactttgctgctcaacacatgttggattacttcactatgattaacagaccttcctatgaaaatctagtcaaggatttctaggtca |
107 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
5983 |
atggatatcaagggatactttgctgctcaacacatgttggattacttcactatgattaacagaccttcctatgaaaatctagtcaaggatttctgggtca |
5884 |
T |
|
| Q |
108 |
gggcataagtgttcgacagaagaaatgctgaagaagaagaagttagggctgtaaaggagaatcccaaactcaaagggaaatcaagaacagaaatgggtct |
207 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
5883 |
gggcaaaagtgttcgacagaagaaatgctgaagagaaagaagttagggctgtaaaggagaatcccatactcaaagggaaatcaagaacagaaatgggtct |
5784 |
T |
|
| Q |
208 |
aagaccattcaacggaacagaaataagatcagcagtgatgggtatggaaattaccatcacggtggaaacaatttctagagcatgcagatgctcaattgat |
307 |
Q |
| |
|
|||||||||||| ||||||||||| |||||| || ||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||| |||| |
|
|
| T |
5783 |
aagaccattcaatggaacagaaatcagatcaacaatgatgggtatggaaattaccatcacagtggaaacaatcgctagcgcatgcagatgctcaaatgat |
5684 |
T |
|
| Q |
308 |
g |
308 |
Q |
| |
|
| |
|
|
| T |
5683 |
g |
5683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0544 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: scaffold0544
Description:
Target: scaffold0544; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 8 - 308
Target Start/End: Original strand, 6204 - 6504
Alignment:
| Q |
8 |
atggacatcaagggatactttgctgctcaacacatgttggattacttcactatgattaacagaccttcctatgaaaatctagtcaaggatttctaggtca |
107 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
|
|
| T |
6204 |
atggatatcaagggatactttgctgctcaacacatgttggattacttcactatgattaacagaccttcctatgaaaatctagtcaaggatttttgggtca |
6303 |
T |
|
| Q |
108 |
gggcataagtgttcgacagaagaaatgctgaagaagaagaagttagggctgtaaaggagaatcccaaactcaaagggaaatcaagaacagaaatgggtct |
207 |
Q |
| |
|
||| | ||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6304 |
gggtagaagtgttcgacagaagaaatgttgtagaataagaagttagggctgtaaaggagaatcccaaactcaaagggaaatcaagaacagaaatgggtct |
6403 |
T |
|
| Q |
208 |
aagaccattcaacggaacagaaataagatcagcagtgatgggtatggaaattaccatcacggtggaaacaatttctagagcatgcagatgctcaattgat |
307 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
6404 |
aagaccattcaacggaatagaaatcagatcagcagtgatgtgtatggaaattaccatcacagtggaaacaatcgctagagcatgcaaatgctcaattgat |
6503 |
T |
|
| Q |
308 |
g |
308 |
Q |
| |
|
| |
|
|
| T |
6504 |
g |
6504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 2 - 308
Target Start/End: Original strand, 19309194 - 19309500
Alignment:
| Q |
2 |
aatgagatggacatcaagggatactttgctgctcaacacatgttggattacttcactatgattaacagaccttcctatgaaaatctagtcaaggatttct |
101 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||| ||||| ||||||||||| ||||| ||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
19309194 |
aatgaaatggatatcaagggatactttgctgctcaatacatgatggattacttcgaaatgataaacagaccttcttatgaaaatctaatcaaggatttct |
19309293 |
T |
|
| Q |
102 |
aggtcagggcataagtgttcgacagaagaaatgctgaagaagaagaagttagggctgtaaaggagaatcccaaactcaaagggaaatcaagaacagaaat |
201 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
19309294 |
aggtcagggcagaagtgttcgacagaagaaacgctgaagaagaagaagttagggctataaaggagaatcccagactcaaagggaaatcaagaacagaaat |
19309393 |
T |
|
| Q |
202 |
gggtctaagaccattcaacggaacagaaataagatcagcagtgatgggtatggaaattaccatcacggtggaaacaatttctagagcatgcagatgctca |
301 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||| ||||||||| |
|
|
| T |
19309394 |
gggtctaagaccattcaatggaacagaaatcagatcagcagtgatgtgtatggaaattaccatcacagtggaaacaatcgctagagcatgtagatgctca |
19309493 |
T |
|
| Q |
302 |
attgatg |
308 |
Q |
| |
|
| ||||| |
|
|
| T |
19309494 |
aatgatg |
19309500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 8 - 302
Target Start/End: Original strand, 24810926 - 24811220
Alignment:
| Q |
8 |
atggacatcaagggatactttgctgctcaacacatgttggattacttcactatgattaacagaccttcctatgaaaatctagtcaaggatttctaggtca |
107 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| ||||||||| | ||| | |||||||| || |||| ||||||||||||||||||||||| | |
|
|
| T |
24810926 |
atggacatcaagggttactttgctgctcaacacatgacggattactttaaaatgttaaacagaccctcgtatgtgaatctagtcaaggatttctaggtta |
24811025 |
T |
|
| Q |
108 |
gggcataagtgttcgacagaagaaatgctgaagaagaagaagttagggctgtaaaggagaatcccaaactcaaagggaaatcaagaacagaaatgggtct |
207 |
Q |
| |
|
||||| ||||||||||||| | | |||||||||| ||||||| || | || ||||| ||||| | ||||||||||||||| ||||| ||||||| ||| |
|
|
| T |
24811026 |
gggcagaagtgttcgacaggaaagatgctgaagaggaagaagctaagttagtgaaggaaaatcctagactcaaagggaaatcgagaacggaaatggttct |
24811125 |
T |
|
| Q |
208 |
aagaccattcaacggaacagaaataagatcagcagtgatgggtatggaaattaccatcacggtggaaacaatttctagagcatgcagatgctcaa |
302 |
Q |
| |
|
|| ||| ||||| ||||||||||| || || || |||||||||||||| ||||||||||| || ||||||||| ||| ||||||||||||||||| |
|
|
| T |
24811126 |
aaaaccgttcaaaggaacagaaatcaggtctgctgtgatgggtatggagattaccatcacagtagaaacaattgctaaagcatgcagatgctcaa |
24811220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 2 - 307
Target Start/End: Complemental strand, 13527266 - 13526958
Alignment:
| Q |
2 |
aatgagatggacatcaagggatactttgctgctcaacacatgttggattacttcactatgattaacagaccttcctatgaaaatctagtcaaggatttct |
101 |
Q |
| |
|
|||| |||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| | |
|
|
| T |
13527266 |
aatgggatggatatcaaggattactttgctgctcaacatatgttggattacttcactatgattaacagacattcctatgaaaatctagtcaaagatttat |
13527167 |
T |
|
| Q |
102 |
aggtcagggcataagtgttcgacagaagaaatgctgaagaagaagaag---ttagggctgtaaaggagaatcccaaactcaaagggaaatcaagaacaga |
198 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||||||||||||||| | |||| |||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
13527166 |
gggtcagggcagaagtgttcgacagaagaaacgctgaagaagaagaagaagtcagggttgtaaaggagaatccctgactcaaagggaaatcaagaacaga |
13527067 |
T |
|
| Q |
199 |
aatgggtctaagaccattcaacggaacagaaataagatcagcagtgatgggtatggaaattaccatcacggtggaaacaatttctagagcatgcagatgc |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
13527066 |
aatgggtctaagaccattcaacggaacagaaataagatcagcagtgatgggtatggagattaccatcacggtggaaacaattgttatagcatgcagatgc |
13526967 |
T |
|
| Q |
299 |
tcaattgat |
307 |
Q |
| |
|
|| |||||| |
|
|
| T |
13526966 |
tcgattgat |
13526958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 98 - 302
Target Start/End: Complemental strand, 23482058 - 23481854
Alignment:
| Q |
98 |
ttctaggtcagggcataagtgttcgacagaagaaatgctgaagaagaagaagttagggctgtaaaggagaatcccaaactcaaagggaaatcaagaacag |
197 |
Q |
| |
|
|||| ||| |||||| ||||||| ||||| | | ||||||||||||||||| ||| | ||| ||||||||||| || || ||||||||||||||||| | |
|
|
| T |
23482058 |
ttctgggttagggcagaagtgtttgacaggaaagatgctgaagaagaagaaattaagcttgtgaaggagaatcctaagcttaaagggaaatcaagaacgg |
23481959 |
T |
|
| Q |
198 |
aaatgggtctaagaccattcaacggaacagaaataagatcagcagtgatgggtatggaaattaccatcacggtggaaacaatttctagagcatgcagatg |
297 |
Q |
| |
|
|||||||| | | || ||||| ||||||||||| || || || |||||||||||||| ||||||||||| || ||||||||| ||| |||||||||||| |
|
|
| T |
23481958 |
aaatgggtttgaatccgttcaaaggaacagaaatcaggtctgctgtgatgggtatggagattaccatcacagtagaaacaattgctaaagcatgcagatg |
23481859 |
T |
|
| Q |
298 |
ctcaa |
302 |
Q |
| |
|
||||| |
|
|
| T |
23481858 |
ctcaa |
23481854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 83 - 297
Target Start/End: Original strand, 21672844 - 21673058
Alignment:
| Q |
83 |
aatctagtcaaggatttctaggtcagggcataagtgttcgacagaagaaatgctgaagaagaagaagttagggctgtaaaggagaatcccaaactcaaag |
182 |
Q |
| |
|
|||||||| || ||||||| ||| || ||| |||| || || || | | ||||||||||||||||| ||| | || |||||||| || || || |||| |
|
|
| T |
21672844 |
aatctagtgaaagatttctgggtaagagcagaagtatttgataggaaagatgctgaagaagaagaaattaagctggtgaaggagaaccctaagcttaaag |
21672943 |
T |
|
| Q |
183 |
ggaaatcaagaacagaaatgggtctaagaccattcaacggaacagaaataagatcagcagtgatgggtatggaaattaccatcacggtggaaacaatttc |
282 |
Q |
| |
|
| ||||| ||||| ||||||||| | | ||| ||||| || || |||||||| || || |||||||| ||||| || |||||||| | ||||| ||| | |
|
|
| T |
21672944 |
gaaaatctagaacggaaatgggtttgaaaccgttcaatggtactgaaataaggtctgctgtgatgggaatggagatcaccatcactgcagaaactattgc |
21673043 |
T |
|
| Q |
283 |
tagagcatgcagatg |
297 |
Q |
| |
|
||||| ||||||||| |
|
|
| T |
21673044 |
tagagtatgcagatg |
21673058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 8 - 308
Target Start/End: Complemental strand, 23787464 - 23787164
Alignment:
| Q |
8 |
atggacatcaagggatactttgctgctcaacacatgttggattacttcactatgattaacagaccttcctatgaaaatctagtcaaggatttctaggtca |
107 |
Q |
| |
|
||||| |||||||| |||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| | |
|
|
| T |
23787464 |
atggatatcaagggttacttttctgctcaacacatgctggattacttcactatgataaacagaccttcctatgaaaatctagtcaaggatttctgggtta |
23787365 |
T |
|
| Q |
108 |
gggcataagtgttcgacagaagaaatgctgaagaagaagaagttagggctgtaaaggagaatcccaaactcaaagggaaatcaagaacagaaatgggtct |
207 |
Q |
| |
|
||||| ||||||||||||||||||| | | ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
23787364 |
gggcagaagtgttcgacagaagaaacgttaaagaagaagaagtcagggctgtaaaggagaatcccaaactcaaagtaaaatcaagaacagaaatgggtct |
23787265 |
T |
|
| Q |
208 |
aagaccattcaacggaacagaaataagatcagcagtgatgggtatggaaattaccatcacggtggaaacaatttctagagcatgcagatgctcaattgat |
307 |
Q |
| |
|
|||||||||||| |||||||| || |||||| |||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||| |||| |
|
|
| T |
23787264 |
aagaccattcaatggaacagagattagatcaacagtgatgggtatggaaattaccatcacagtggaaataatcgctagagcatgcagatgctcaaatgat |
23787165 |
T |
|
| Q |
308 |
g |
308 |
Q |
| |
|
| |
|
|
| T |
23787164 |
g |
23787164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 8 - 302
Target Start/End: Original strand, 22153115 - 22153409
Alignment:
| Q |
8 |
atggacatcaagggatactttgctgctcaacacatgttggattacttcactatgattaacagaccttcctatgaaaatctagtcaaggatttctaggtca |
107 |
Q |
| |
|
||||| ||||| || || |||||||||||||| ||||||||||||||||| ||||| |||| ||||||||||||||| | |||||||| |||| ||| | |
|
|
| T |
22153115 |
atggatatcaaaggttattttgctgctcaacatatgttggattacttcacgatgatcaacaaaccttcctatgaaaaccaggtcaaggacttctgggtaa |
22153214 |
T |
|
| Q |
108 |
gggcataagtgttcgacagaagaaatgctgaagaagaagaagttagggctgtaaaggagaatcccaaactcaaagggaaatcaagaacagaaatgggtct |
207 |
Q |
| |
|
| || | ||||| |||| |||||| || |||||||| |||| ||||||||||||||||| || | ||||||||||||||||||| |||||||||| | |
|
|
| T |
22153215 |
agccagaggtgtttgacaaaagaaacgccaaagaagaaaaagtcagggctgtaaaggagaaccctagactcaaagggaaatcaagagaagaaatgggttt |
22153314 |
T |
|
| Q |
208 |
aagaccattcaacggaacagaaataagatcagcagtgatgggtatggaaattaccatcacggtggaaacaatttctagagcatgcagatgctcaa |
302 |
Q |
| |
|
|||||||||||| |||||| |||| |||||| |||||||||||||||| ||||||||||| |||||||| ||| ||| ||||||||||||||||| |
|
|
| T |
22153315 |
aagaccattcaatggaacacaaatcagatcaacagtgatgggtatggagattaccatcactgtggaaactattgctaaagcatgcagatgctcaa |
22153409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 8 - 308
Target Start/End: Original strand, 50064 - 50364
Alignment:
| Q |
8 |
atggacatcaagggatactttgctgctcaacacatgttggattacttcactatgattaacagaccttcctatgaaaatctagtcaaggatttctaggtca |
107 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| ||||||||||||| ||| | ||||||||||| |||||||||||||||||||| || | ||| | |
|
|
| T |
50064 |
atggatatcaagggatactttgctgctcaacacatgatggattacttcacaatgttaaacagaccttcttatgaaaatctagtcaaggacttttgggtta |
50163 |
T |
|
| Q |
108 |
gggcataagtgttcgacagaagaaatgctgaagaagaagaagttagggctgtaaaggagaatcccaaactcaaagggaaatcaagaacagaaatgggtct |
207 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
50164 |
gggcagaagtgttcgacagaagaaacactgaagaagaagaagttagggttgtaaaggagaatcctagactcaaagggaaatcaagaacagaaatgggtct |
50263 |
T |
|
| Q |
208 |
aagaccattcaacggaacagaaataagatcagcagtgatgggtatggaaattaccatcacggtggaaacaatttctagagcatgcagatgctcaattgat |
307 |
Q |
| |
|
||||| |||||| |||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
50264 |
aagacaattcaatggaacagaaataaggtcagcgatgatgggtatggaaattaccatcacagtggaaacaattgctagagcatgcagatgctcaaatgat |
50363 |
T |
|
| Q |
308 |
g |
308 |
Q |
| |
|
| |
|
|
| T |
50364 |
g |
50364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 8 - 308
Target Start/End: Original strand, 1000 - 1299
Alignment:
| Q |
8 |
atggacatcaagggatactttgctgctcaacacatgttggattacttcactatgattaacagaccttcctatgaaaatctagtcaaggatttctaggtca |
107 |
Q |
| |
|
||||| ||||| ||||||||||||| |||| ||||| ||||||||||||| ||||| |||||||| || |||||||||||||||||||| |||||||| | |
|
|
| T |
1000 |
atggatatcaaaggatactttgctgttcaa-acatgatggattacttcacaatgataaacagaccctcttatgaaaatctagtcaaggacttctaggtaa |
1098 |
T |
|
| Q |
108 |
gggcataagtgttcgacagaagaaatgctgaagaagaagaagttagggctgtaaaggagaatcccaaactcaaagggaaatcaagaacagaaatgggtct |
207 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
1099 |
gggctgaagtgttcgacagaagaaacgctgaagaagaagaagttagggttgtaaaggagaatcccagactcaaagggaaatcaagaacagaaatgggtct |
1198 |
T |
|
| Q |
208 |
aagaccattcaacggaacagaaataagatcagcagtgatgggtatggaaattaccatcacggtggaaacaatttctagagcatgcagatgctcaattgat |
307 |
Q |
| |
|
|| ||||||||| |||||| ||||||| |||| |||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
1199 |
aaaaccattcaatggaacataaataaggtcagtagtgatgggtatggaaatcaccatcatagtggaaacaattgctagagcatgcagatgctcaaatgat |
1298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0073 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: scaffold0073
Description:
Target: scaffold0073; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 8 - 302
Target Start/End: Complemental strand, 62555 - 62257
Alignment:
| Q |
8 |
atggacatcaagggatactttgctgctcaacacatgttggattacttcactatgattaacagaccttcctatgaaaatctagtcaaggatttctaggtca |
107 |
Q |
| |
|
||||| ||||| || ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||| ||| | |
|
|
| T |
62555 |
atggatatcaaaggttactttgctgctcaacatatgttggattacttcactatgatcaacagaccttcctatgaaaacctagtcaaggacttctgggtaa |
62456 |
T |
|
| Q |
108 |
gggcataagtgtt----cgacagaagaaatgctgaagaagaagaagttagggctgtaaaggagaatcccaaactcaaagggaaatcaagaacagaaatgg |
203 |
Q |
| |
|
|||| | || || |||||||||||| ||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
62455 |
aggcagaggttttcgaccgacagaagaaacgctgaagaagaagaagtcagggctgtaaaggggaatcccagactcaaagggaaatcaagaacagaaatgg |
62356 |
T |
|
| Q |
204 |
gtctaagaccattcaacggaacagaaataagatcagcagtgatgggtatggaaattaccatcacggtggaaacaatttctagagcatgcagatgctcaa |
302 |
Q |
| |
|
|| |||||||||| || ||||||||||| |||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
62355 |
gtttaagaccatttaatggaacagaaatcagatcaacagtgatgggtatggagattaccatcacggtggaaacaattgctagagcatgcagatgctcaa |
62257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 8 - 308
Target Start/End: Original strand, 55540 - 55840
Alignment:
| Q |
8 |
atggacatcaagggatactttgctgctcaacacatgttggattacttcactatgattaacagaccttcctatgaaaatctagtcaaggatttctaggtca |
107 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| || | ||||||||||||||| || |||||||| |||| ||| | |
|
|
| T |
55540 |
atggatatcaagggatactttgctgctcaacatatgttggattacttcactatgatcaatacaccttcctatgaaaacctggtcaaggacttctgggtaa |
55639 |
T |
|
| Q |
108 |
gggcataagtgttcgacagaagaaatgctgaagaagaagaagttagggctgtaaaggagaatcccaaactcaaagggaaatcaagaacagaaatgggtct |
207 |
Q |
| |
|
|| | | |||||||| |||||||| ||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||| ||||||||||| | |
|
|
| T |
55640 |
aggtagaggtgttcgatagaagaaacgctgaagaagaagaagtcagggctgtaaaggaggatcccagactcaaagggaaatcaagagcagaaatgggttt |
55739 |
T |
|
| Q |
208 |
aagaccattcaacggaacagaaataagatcagcagtgatgggtatggaaattaccatcacggtggaaacaatttctagagcatgcagatgctcaattgat |
307 |
Q |
| |
|
||||||||| || |||| |||||| |||||| ||||||||||||||||||||||||||| ||||||||| ||||||| |||||||| |||||| |||||| |
|
|
| T |
55740 |
aagaccatttaatggaatagaaattagatcaacagtgatgggtatggaaattaccatcatggtggaaactatttctaaagcatgcaaatgctccattgat |
55839 |
T |
|
| Q |
308 |
g |
308 |
Q |
| |
|
| |
|
|
| T |
55840 |
g |
55840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 165; Significance: 3e-88; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 8 - 308
Target Start/End: Complemental strand, 18547377 - 18547077
Alignment:
| Q |
8 |
atggacatcaagggatactttgctgctcaacacatgttggattacttcactatgattaacagaccttcctatgaaaatctagtcaaggatttctaggtca |
107 |
Q |
| |
|
||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| || |||||||| |||| ||| | |
|
|
| T |
18547377 |
atggatatcaaaggatattttgctgctcaacacatgttggattacttcactatgatcaacagaccgtcctatgaaaacctggtcaaggacttctgggtaa |
18547278 |
T |
|
| Q |
108 |
gggcataagtgttcgacagaagaaatgctgaagaagaagaagttagggctgtaaaggagaatcccaaactcaaagggaaatcaagaacagaaatgggtct |
207 |
Q |
| |
|
|||| | ||||| |||||||||| || ||||||||||||| ||||||||||| ||||| |||| ||||||||||||||||||| |||||||||| | |
|
|
| T |
18547277 |
aggcagaggtgttttacagaagaaacactaaagaagaagaagtcagggctgtaaaagagaaccccagactcaaagggaaatcaagagaagaaatgggttt |
18547178 |
T |
|
| Q |
208 |
aagaccattcaacggaacagaaataagatcagcagtgatgggtatggaaattaccatcacggtggaaacaatttctagagcatgcagatgctcaattgat |
307 |
Q |
| |
|
|||||||||||| |||||| |||| |||||| |||||||||||||||| ||| ||||||||||||| |||||| ||||||||||||||||||||| |||| |
|
|
| T |
18547177 |
aagaccattcaatggaacaaaaattagatcaacagtgatgggtatggagattcccatcacggtggatacaattgctagagcatgcagatgctcaaatgat |
18547078 |
T |
|
| Q |
308 |
g |
308 |
Q |
| |
|
| |
|
|
| T |
18547077 |
g |
18547077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 8 - 298
Target Start/End: Complemental strand, 17783526 - 17783236
Alignment:
| Q |
8 |
atggacatcaagggatactttgctgctcaacacatgttggattacttcactatgattaacagaccttcctatgaaaatctagtcaaggatttctaggtca |
107 |
Q |
| |
|
||||||||||| | || |||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||| || ||||||||||||||||| | |
|
|
| T |
17783526 |
atggacatcaaagagtattttgctgctcaacatatgttggattacttcacgatgattaacagaccttcatatgaaaacctggtcaaggatttctaggtaa |
17783427 |
T |
|
| Q |
108 |
gggcataagtgttcgacagaagaaatgctgaagaagaagaagttagggctgtaaaggagaatcccaaactcaaagggaaatcaagaacagaaatgggtct |
207 |
Q |
| |
|
|||| | ||||||||||||||| | ||| |||| |||||||| ||||||||||||||||| | || ||| ||||||||||||||| ||||||| || | |
|
|
| T |
17783426 |
aggcagaggtgttcgacagaagagacgctaaagacgaagaagtcagggctgtaaaggagaacctcatacttaaagggaaatcaagagaagaaatgagttt |
17783327 |
T |
|
| Q |
208 |
aagaccattcaacggaacagaaataagatcagcagtgatgggtatggaaattaccatcacggtggaaacaatttctagagcatgcagatgc |
298 |
Q |
| |
|
|||||||||||| ||||||||||| |||||| |||||| || |||||| ||||||||||| || ||||| ||| ||| ||||||||||||| |
|
|
| T |
17783326 |
aagaccattcaatggaacagaaatcagatcaacagtgacggatatggagattaccatcacagtagaaactattgctaaagcatgcagatgc |
17783236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 8 - 308
Target Start/End: Original strand, 19458197 - 19458495
Alignment:
| Q |
8 |
atggacatcaagggatactttgctgctcaacacatgttggattacttcactatgattaacagaccttcctatgaaaatctagtcaaggatttctaggtca |
107 |
Q |
| |
|
|||||||||||||| || |||||||||||| | ||| ||||||||||| ||| | || ||||| || ||||| ||||||||||| ||||||| | | |
|
|
| T |
19458197 |
atggacatcaagggttattttgctgctcaaaatatgatggattacttcggaatgttaaaaagaccctcatatgagaatctagtcaaagatttctcgttag |
19458296 |
T |
|
| Q |
108 |
gggcataagtgttcgacagaagaaatgctgaagaagaagaagttagggctgtaaaggagaatcccaaactcaaagggaaatcaagaacagaaatgggtct |
207 |
Q |
| |
|
||||| ||||||||||||| | ||| ||||| ||||||||| ||||| |||||||||||||| | ||||| |||||||||||||| ||||||||||| |
|
|
| T |
19458297 |
gggcagaagtgttcgacaggaaaaacgctgaggaagaagaaactagggtagtaaaggagaatcctagactca--gggaaatcaagaacggaaatgggtct |
19458394 |
T |
|
| Q |
208 |
aagaccattcaacggaacagaaataagatcagcagtgatgggtatggaaattaccatcacggtggaaacaatttctagagcatgcagatgctcaattgat |
307 |
Q |
| |
|
||| | ||||| || | |||||| || || || |||||||||||||| ||||||||||| || |||||||| ||| |||||||| |||||||| |||| |
|
|
| T |
19458395 |
aagttcgttcaaaggtatagaaatcaggtctgctgtgatgggtatggagattaccatcacagtagaaacaatcgctaaagcatgcaaatgctcaaatgat |
19458494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 17 - 300
Target Start/End: Complemental strand, 1654776 - 1654493
Alignment:
| Q |
17 |
aagggatactttgctgctcaacacatgttggattacttcactatgattaacagaccttcctatgaaaatctagtcaaggatttctaggtcagggcataag |
116 |
Q |
| |
|
||||| ||||||||||||||||| ||| | |||||||| ||| | |||| ||| || ||| ||||| || ||||| |||| | | |||||| ||| |
|
|
| T |
1654776 |
aagggttactttgctgctcaacaaatggttgattactttgaaatgttgaacaaaccatcttatatgaatctggtaaaggacttctggattagggcagaag |
1654677 |
T |
|
| Q |
117 |
tgttcgacagaagaaatgctgaagaagaagaagttagggctgtaaaggagaatcccaaactcaaagggaaatcaagaacagaaatgggtctaagaccatt |
216 |
Q |
| |
|
|||||||||||| | |||||||||| ||||||| || | |||||||| ||||| | ||| ||||| |||||||| | |||||||||||| | ||| || |
|
|
| T |
1654676 |
tgttcgacagaaaagatgctgaagaggaagaagctaagctggtaaaggaaaatccaagactgaaaggaaaatcaaggatagaaatgggtctcaaaccgtt |
1654577 |
T |
|
| Q |
217 |
caacggaacagaaataagatcagcagtgatgggtatggaaattaccatcacggtggaaacaatttctagagcatgcagatgctc |
300 |
Q |
| |
|
|| |||||| |||| || || || |||||||||||||| ||||||||||| || ||||||||| ||| ||||||||||||||| |
|
|
| T |
1654576 |
cataggaacaaaaattaggtctgctgtgatgggtatggagattaccatcactgtagaaacaattgctaaagcatgcagatgctc |
1654493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 132 - 267
Target Start/End: Original strand, 25683039 - 25683174
Alignment:
| Q |
132 |
atgctgaagaagaagaagttagggctgtaaaggagaatcccaaactcaaagggaaatcaagaacagaaatgggtctaagaccattcaacggaacagaaat |
231 |
Q |
| |
|
||||||||||||||||| | | | ||||||||||| || || || || || ||||||||||| ||||||||| | | ||| || || || || ||||| |
|
|
| T |
25683039 |
atgctgaagaagaagaaatgaagatggtaaaggagaaccctaagcttaagggtaaatcaagaactgaaatgggtttgaaaccgtttaaagggactgaaat |
25683138 |
T |
|
| Q |
232 |
aagatcagcagtgatgggtatggaaattaccatcac |
267 |
Q |
| |
|
|||||| || |||||||| ||||| || |||||||| |
|
|
| T |
25683139 |
aagatccgctgtgatgggaatggagatcaccatcac |
25683174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0185 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: scaffold0185
Description:
Target: scaffold0185; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 8 - 308
Target Start/End: Complemental strand, 13177 - 12877
Alignment:
| Q |
8 |
atggacatcaagggatactttgctgctcaacacatgttggattacttcactatgattaacagaccttcctatgaaaatctagtcaaggatttctaggtca |
107 |
Q |
| |
|
|||||||||||||| || ||||||||||| ||||| ||||||||||| | ||| | ||||||||||| ||||| ||||||||||| ||||||| ||| | |
|
|
| T |
13177 |
atggacatcaagggttattttgctgctcagaacatgatggattacttcgcaatgttaaacagaccttcttatgagaatctagtcaaagatttctgggtaa |
13078 |
T |
|
| Q |
108 |
gggcataagtgttcgacagaagaaatgctgaagaagaagaagttagggctgtaaaggagaatcccaaactcaaagggaaatcaagaacagaaatgggtct |
207 |
Q |
| |
|
|||| ||||||||||||| ||||| ||||| |||||||||| ||||| ||||||||||||||| | ||||||||||||||||||||| ||||||||||| |
|
|
| T |
13077 |
gggctgaagtgttcgacaggagaaacgctgaggaagaagaagctagggttgtaaaggagaatcctagactcaaagggaaatcaagaacggaaatgggtct |
12978 |
T |
|
| Q |
208 |
aagaccattcaacggaacagaaataagatcagcagtgatgggtatggaaattaccatcacggtggaaacaatttctagagcatgcagatgctcaattgat |
307 |
Q |
| |
|
|||||||| ||| ||||||||||| || || || |||||||||||||| ||||||||||| || |||||||| ||| ||||||||||||||||| |||| |
|
|
| T |
12977 |
aagaccatccaatggaacagaaatcaggtctgctgtgatgggtatggagattaccatcacagtcgaaacaatcgctaaagcatgcagatgctcaaatgat |
12878 |
T |
|
| Q |
308 |
g |
308 |
Q |
| |
|
| |
|
|
| T |
12877 |
g |
12877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0738 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: scaffold0738
Description:
Target: scaffold0738; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 8 - 298
Target Start/End: Original strand, 827 - 1117
Alignment:
| Q |
8 |
atggacatcaagggatactttgctgctcaacacatgttggattacttcactatgattaacagaccttcctatgaaaatctagtcaaggatttctaggtca |
107 |
Q |
| |
|
||||| ||||| || || |||| ||||||||| ||||||||||||||||| ||||| ||||||||||| |||||||| || |||||||| ||||| || | |
|
|
| T |
827 |
atggatatcaaaggttattttgttgctcaacatatgttggattacttcacgatgatcaacagaccttcatatgaaaacctggtcaaggacttctatgtaa |
926 |
T |
|
| Q |
108 |
gggcataagtgttcgacagaagaaatgctgaagaagaagaagttagggctgtaaaggagaatcccaaactcaaagggaaatcaagaacagaaatgggtct |
207 |
Q |
| |
|
|||| | ||||||||||| | ||| ||| ||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||| |||||||||| | |
|
|
| T |
927 |
aggcagaggtgttcgacaggaaaaacgctaaagaagaagaagtcagggctgtaaaggagaaccccagactcaaagggaaatcaagagaagaaatgggttt |
1026 |
T |
|
| Q |
208 |
aagaccattcaacggaacagaaataagatcagcagtgatgggtatggaaattaccatcacggtggaaacaatttctagagcatgcagatgc |
298 |
Q |
| |
|
|||||||||||| ||||||||||| |||||| |||||||||||||||| ||||||||||| || ||||| ||| ||| || ||| |||||| |
|
|
| T |
1027 |
aagaccattcaatggaacagaaatcagatcaacagtgatgggtatggagattaccatcacagtagaaactattgctaaagaatgtagatgc |
1117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 137; Significance: 2e-71; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 8 - 308
Target Start/End: Original strand, 20879832 - 20880132
Alignment:
| Q |
8 |
atggacatcaagggatactttgctgctcaacacatgttggattacttcactatgattaacagaccttcctatgaaaatctagtcaaggatttctaggtca |
107 |
Q |
| |
|
||||| ||||| || | ||||| ||||||||| ||| | || |||||||||||||| |||||||||||||||||||| || |||||||| |||| ||| | |
|
|
| T |
20879832 |
atggatatcaaaggtttctttgttgctcaacatatgcttgactacttcactatgatcaacagaccttcctatgaaaacctggtcaaggacttctgggtaa |
20879931 |
T |
|
| Q |
108 |
gggcataagtgttcgacagaagaaatgctgaagaagaagaagttagggctgtaaaggagaatcccaaactcaaagggaaatcaagaacagaaatgggtct |
207 |
Q |
| |
|
|||| | |||||| ||| |||| |||| ||||||||||||| |||| |||||||||||| |||| ||||||||| ||||||||| ||||||| || | |
|
|
| T |
20879932 |
aggcagaggtgttcaacataagagatgcaaaagaagaagaagtcagggttgtaaaggagaaccccagactcaaaggaaaatcaagagaagaaatgagttt |
20880031 |
T |
|
| Q |
208 |
aagaccattcaacggaacagaaataagatcagcagtgatgggtatggaaattaccatcacggtggaaacaatttctagagcatgcagatgctcaattgat |
307 |
Q |
| |
|
||||||||| || ||||||||||| |||||| |||||||||||||||| |||||||||||||||||||| ||| ||| ||||||||||||||| |||||| |
|
|
| T |
20880032 |
aagaccatttaatggaacagaaatcagatcaacagtgatgggtatggagattaccatcacggtggaaactattgctaaagcatgcagatgctcgattgat |
20880131 |
T |
|
| Q |
308 |
g |
308 |
Q |
| |
|
| |
|
|
| T |
20880132 |
g |
20880132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 83 - 302
Target Start/End: Complemental strand, 22646703 - 22646484
Alignment:
| Q |
83 |
aatctagtcaaggatttctaggtcagggcataagtgttcgacagaagaaatgctgaagaagaagaagttagggctgtaaaggagaatcccaaactcaaag |
182 |
Q |
| |
|
||||| ||||||||||||| ||| |||||| ||||||||||||| | | | |||||||| ||||||| |||| |||||||| ||||| | |||||||| |
|
|
| T |
22646703 |
aatcttgtcaaggatttctgggttagggcagaagtgttcgacaggaaagacgctgaagaggaagaagctaggttagtaaaggaaaatcctagactcaaag |
22646604 |
T |
|
| Q |
183 |
ggaaatcaagaacagaaatgggtctaagaccattcaacggaacagaaataagatcagcagtgatgggtatggaaattaccatcacggtggaaacaatttc |
282 |
Q |
| |
|
||||||| ||||| ||||||||||||| ||| ||||| ||||||||||| || || || |||||||||||||| ||||||||||| || ||||||||| | |
|
|
| T |
22646603 |
ggaaatcgagaacggaaatgggtctaaaaccgttcaaaggaacagaaatcaggtctgctgtgatgggtatggagattaccatcacagtagaaacaattgc |
22646504 |
T |
|
| Q |
283 |
tagagcatgcagatgctcaa |
302 |
Q |
| |
|
|| ||||||||||||||||| |
|
|
| T |
22646503 |
taaagcatgcagatgctcaa |
22646484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 202
Target Start/End: Complemental strand, 7683048 - 7682949
Alignment:
| Q |
103 |
ggtcagggcataagtgttcgacagaagaaatgctgaagaagaagaagttagggctgtaaaggagaatcccaaactcaaagggaaatcaagaacagaaatg |
202 |
Q |
| |
|
|||||||||| ||||||||||||||| | |||||||||||||||| | | |||||| |||| || || || |||||||||||||||||||||||| |
|
|
| T |
7683048 |
ggtcagggcagaagtgttcgacagaaaagctgctgaagaagaagaatctgagatggtaaagaagaaccctaagctgaaagggaaatcaagaacagaaatg |
7682949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 133; Significance: 4e-69; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 8 - 308
Target Start/End: Complemental strand, 108938 - 108638
Alignment:
| Q |
8 |
atggacatcaagggatactttgctgctcaacacatgttggattacttcactatgattaacagaccttcctatgaaaatctagtcaaggatttctaggtca |
107 |
Q |
| |
|
|||||||||||||| || |||||||||||| | ||| ||||||||||| ||| | ||||||| ||| ||||| ||||||||||| ||||||| ||| | |
|
|
| T |
108938 |
atggacatcaagggttattttgctgctcaaaatatgatggattacttcgtaatgttgaacagactttcatatgagaatctagtcaaagatttctgggtga |
108839 |
T |
|
| Q |
108 |
gggcataagtgttcgacagaagaaatgctgaagaagaagaagttagggctgtaaaggagaatcccaaactcaaagggaaatcaagaacagaaatgggtct |
207 |
Q |
| |
|
||||| ||||||||||||| | || ||||| |||||||||| ||| | |||||||||||||| | ||||||||||||||||||||| ||||||||||| |
|
|
| T |
108838 |
gggcagaagtgttcgacaggaaaatcgctgaggaagaagaagctagcgtagtaaaggagaatcctagactcaaagggaaatcaagaacggaaatgggtct |
108739 |
T |
|
| Q |
208 |
aagaccattcaacggaacagaaataagatcagcagtgatgggtatggaaattaccatcacggtggaaacaatttctagagcatgcagatgctcaattgat |
307 |
Q |
| |
|
|||||| ||||| ||||||||||| || || | |||||||||||||| ||||||||||| || ||||||||| ||| ||||||||||||||||| |||| |
|
|
| T |
108738 |
aagaccgttcaaaggaacagaaatcaggtctactgtgatgggtatggagattaccatcacagtagaaacaattgctaaagcatgcagatgctcaaatgat |
108639 |
T |
|
| Q |
308 |
g |
308 |
Q |
| |
|
| |
|
|
| T |
108638 |
g |
108638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 8 - 302
Target Start/End: Original strand, 2870 - 3164
Alignment:
| Q |
8 |
atggacatcaagggatactttgctgctcaacacatgttggattacttcactatgattaacagaccttcctatgaaaatctagtcaaggatttctaggtca |
107 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| ||||||||| | ||| | |||||||| || |||| ||||||||||||||||||||||| | |
|
|
| T |
2870 |
atggacatcaagggttactttgctgctcaacacatgacggattactttaaaatgttaaacagaccctcgtatgtgaatctagtcaaggatttctaggtta |
2969 |
T |
|
| Q |
108 |
gggcataagtgttcgacagaagaaatgctgaagaagaagaagttagggctgtaaaggagaatcccaaactcaaagggaaatcaagaacagaaatgggtct |
207 |
Q |
| |
|
||||| ||||||||||||| | | |||||||||| ||||||| || | || ||||| ||||| | ||||||||||||||| ||||| ||||||| ||| |
|
|
| T |
2970 |
gggcagaagtgttcgacaggaaagatgctgaagaggaagaagctaagttagtgaaggaaaatcctagactcaaagggaaatcgagaacggaaatggttct |
3069 |
T |
|
| Q |
208 |
aagaccattcaacggaacagaaataagatcagcagtgatgggtatggaaattaccatcacggtggaaacaatttctagagcatgcagatgctcaa |
302 |
Q |
| |
|
|| ||| ||||| ||||||||||| || || || |||||||||||||| ||||||||||| || ||||||||| ||| ||||||||||||||||| |
|
|
| T |
3070 |
aaaaccgttcaaaggaacagaaatcaggtctgctgtgatgggtatggagattaccatcacagtagaaacaattgctaaagcatgcagatgctcaa |
3164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 8 - 308
Target Start/End: Original strand, 13180987 - 13181287
Alignment:
| Q |
8 |
atggacatcaagggatactttgctgctcaacacatgttggattacttcactatgattaacagaccttcctatgaaaatctagtcaaggatttctaggtca |
107 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| |||| || || | |||| | ||||||||||| ||||| ||||| ||||| ||||||| ||| | |
|
|
| T |
13180987 |
atggacatcaagggttactttgctgctcaacacatgatggactattttaatatgttgaacagaccttcgtatgagaatcttgtcaaagatttctgggtta |
13181086 |
T |
|
| Q |
108 |
gggcataagtgttcgacagaagaaatgctgaagaagaagaagttagggctgtaaaggagaatcccaaactcaaagggaaatcaagaacagaaatgggtct |
207 |
Q |
| |
|
||||| |||||||||| || | | | |||||||| ||||| | |||| |||||||| ||||| | ||||||||||||||||||||| ||||||||| | |
|
|
| T |
13181087 |
gggcagaagtgttcgataggaaagacgctgaagaggaagaggctaggttagtaaaggaaaatcctagactcaaagggaaatcaagaacggaaatgggttt |
13181186 |
T |
|
| Q |
208 |
aagaccattcaacggaacagaaataagatcagcagtgatgggtatggaaattaccatcacggtggaaacaatttctagagcatgcagatgctcaattgat |
307 |
Q |
| |
|
|| ||||||||| ||||||||||| || || || |||||||||||||| ||||||||||| || |||| |||| ||| ||||||||||||||||| |||| |
|
|
| T |
13181187 |
aaaaccattcaaaggaacagaaatcaggtctgctgtgatgggtatggagattaccatcacagtagaaataattgctaaagcatgcagatgctcaaatgat |
13181286 |
T |
|
| Q |
308 |
g |
308 |
Q |
| |
|
| |
|
|
| T |
13181287 |
g |
13181287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 123; Significance: 4e-63; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 8 - 302
Target Start/End: Original strand, 161793 - 162087
Alignment:
| Q |
8 |
atggacatcaagggatactttgctgctcaacacatgttggattacttcactatgattaacagaccttcctatgaaaatctagtcaaggatttctaggtca |
107 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| ||||||||||| ||| | || |||||||| ||||| ||||||||||||||||||| ||| | |
|
|
| T |
161793 |
atggacatcaagggttactttgctgctcaacacatgatggattacttcggaatgttgaatagaccttcgtatgagaatctagtcaaggatttctgggtta |
161892 |
T |
|
| Q |
108 |
gggcataagtgttcgacagaagaaatgctgaagaagaagaagttagggctgtaaaggagaatcccaaactcaaagggaaatcaagaacagaaatgggtct |
207 |
Q |
| |
|
||||| ||||||||||||| | | | |||||||| ||||||| |||| ||||||| ||||| | ||||||||||||||||||||| ||||||||||| |
|
|
| T |
161893 |
gggcagaagtgttcgacaggaaagacgctgaagaggaagaagctaggttaataaaggaaaatcctagactcaaagggaaatcaagaacggaaatgggtct |
161992 |
T |
|
| Q |
208 |
aagaccattcaacggaacagaaataagatcagcagtgatgggtatggaaattaccatcacggtggaaacaatttctagagcatgcagatgctcaa |
302 |
Q |
| |
|
|| ||| | ||| ||||||||||| || || | |||||||||||||| |||| |||||| || ||||||||| ||| ||| ||||||||||||| |
|
|
| T |
161993 |
aaaaccgtgcaaaggaacagaaatcaggtctgttgtgatgggtatggagattatcatcacagtagaaacaattgctaaagcttgcagatgctcaa |
162087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 123; Significance: 4e-63; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 8 - 302
Target Start/End: Complemental strand, 13143183 - 13142889
Alignment:
| Q |
8 |
atggacatcaagggatactttgctgctcaacacatgttggattacttcactatgattaacagaccttcctatgaaaatctagtcaaggatttctaggtca |
107 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| ||||||||||| ||| | || |||||||| ||||| ||||||||||||||||||| ||| | |
|
|
| T |
13143183 |
atggacatcaagggttactttgctgctcaacacatgatggattacttcggaatgttgaatagaccttcgtatgagaatctagtcaaggatttctgggtta |
13143084 |
T |
|
| Q |
108 |
gggcataagtgttcgacagaagaaatgctgaagaagaagaagttagggctgtaaaggagaatcccaaactcaaagggaaatcaagaacagaaatgggtct |
207 |
Q |
| |
|
||||| ||||||||||||| | | | |||||||| ||||||| |||| ||||||| ||||| | ||||||||||||||||||||| ||||||||||| |
|
|
| T |
13143083 |
gggcagaagtgttcgacaggaaagacgctgaagaggaagaagctaggttaataaaggaaaatcctagactcaaagggaaatcaagaacggaaatgggtct |
13142984 |
T |
|
| Q |
208 |
aagaccattcaacggaacagaaataagatcagcagtgatgggtatggaaattaccatcacggtggaaacaatttctagagcatgcagatgctcaa |
302 |
Q |
| |
|
|| ||| | ||| ||||||||||| || || | |||||||||||||| |||| |||||| || ||||||||| ||| ||| ||||||||||||| |
|
|
| T |
13142983 |
aaaaccgtgcaaaggaacagaaatcaggtctgttgtgatgggtatggagattatcatcacagtagaaacaattgctaaagcttgcagatgctcaa |
13142889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 14 - 293
Target Start/End: Complemental strand, 15837288 - 15837009
Alignment:
| Q |
14 |
atcaagggatactttgctgctcaacacatgttggattacttcactatgattaacagaccttcctatgaaaatctagtcaaggatttctaggtcagggcat |
113 |
Q |
| |
|
|||||||||||||||| ||||||| ||| |||| ||||||| ||| | ||||||||||| || || || || ||||| |||| ||| | |||| |
|
|
| T |
15837288 |
atcaagggatactttgtcactcaacagatgatggaatacttcaaaatgctgaacagaccttcgtacatgaacctggtgaaggacttctgggttaaggcag |
15837189 |
T |
|
| Q |
114 |
aagtgttcgacagaagaaatgctgaagaagaagaagttagggctgtaaaggagaatcccaaactcaaagggaaatcaagaacagaaatgggtctaagacc |
213 |
Q |
| |
|
|||||| ||| ||| | | |||||| ||||||||| || | |||||| | ||||| |||||||||||||||||| || ||||||||||| | ||| |
|
|
| T |
15837188 |
aagtgtacgatagacaagacgctgaaaaagaagaagctaagctggtaaagaaaaatccaggactcaaagggaaatcaaggactgaaatgggtcttaaacc |
15837089 |
T |
|
| Q |
214 |
attcaacggaacagaaataagatcagcagtgatgggtatggaaattaccatcacggtggaaacaatttctagagcatgca |
293 |
Q |
| |
|
|||||| || || || ||||| || || |||||||||||||||||||||||||| || ||||||||| ||| |||||||| |
|
|
| T |
15837088 |
attcaatggtacggagataaggtctgctgtgatgggtatggaaattaccatcactgtagaaacaattgctaaagcatgca |
15837009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0537 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: scaffold0537
Description:
Target: scaffold0537; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 8 - 191
Target Start/End: Original strand, 1833 - 2016
Alignment:
| Q |
8 |
atggacatcaagggatactttgctgctcaacacatgttggattacttcactatgattaacagaccttcctatgaaaatctagtcaaggatttctaggtca |
107 |
Q |
| |
|
||||| ||||| || ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| || |||||||| |||||||| | |
|
|
| T |
1833 |
atggatatcaaaggttactttgctgctcaacatatgttggattacttcactatgatcaacagaccttcctatgaaaacctggtcaaggacttctaggtaa |
1932 |
T |
|
| Q |
108 |
gggcataagtgttcgacagaagaaatgctgaagaagaagaagttagggctgtaaaggagaatcccaaactcaaagggaaatcaa |
191 |
Q |
| |
|
|||| | ||||||||||||||||| | ||||||||||||||| | ||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
1933 |
aggcagaggtgttcgacagaagaaacgttgaagaagaagaagtcaaggctgtaaaggagaaccccagactcaaagggaaatcaa |
2016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0211 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: scaffold0211
Description:
Target: scaffold0211; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 14 - 302
Target Start/End: Original strand, 6712 - 7000
Alignment:
| Q |
14 |
atcaagggatactttgctgctcaacacatgttggattacttcactatgattaacagaccttcctatgaaaatctagtcaaggatttctaggtcagggcat |
113 |
Q |
| |
|
|||||||| ||||||||| ||||||| ||| | ||||||||| ||| | ||||||||||| || |||||| || ||||| |||||||| |||||| |
|
|
| T |
6712 |
atcaagggttactttgctactcaacatatggttgattacttcgaaatgttaaacagaccttcatacataaatctggtaaaggacttctaggttagggcag |
6811 |
T |
|
| Q |
114 |
aagtgttcgacagaagaaatgctgaagaagaagaagttagggctgtaaaggagaatcccaaactcaaagggaaatcaagaacagaaatgggtctaagacc |
213 |
Q |
| |
|
||||||| ||||| | | | |||||||| |||| || || | |||||||| ||||| | | ||||||||||||| || || ||||||||||| | ||| |
|
|
| T |
6812 |
aagtgtttgacaggaaagacgctgaagaggaagtagctaagctggtaaaggaaaatccaagattcaaagggaaatcgaggactgaaatgggtcttaaacc |
6911 |
T |
|
| Q |
214 |
attcaacggaacagaaataagatcagcagtgatgggtatggaaattaccatcacggtggaaacaatttctagagcatgcagatgctcaa |
302 |
Q |
| |
|
||| | ||||| ||||| || || | ||||||||||||||| || |||||||| | ||||||||| ||| ||||||||||||||||| |
|
|
| T |
6912 |
attaagaggaactgaaattaggtctgaagtgatgggtatggagatcaccatcactgaagaaacaattgctaaagcatgcagatgctcaa |
7000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0297 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0297
Description:
Target: scaffold0297; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 14 - 300
Target Start/End: Complemental strand, 20685 - 20399
Alignment:
| Q |
14 |
atcaagggatactttgctgctcaacacatgttggattacttcactatgattaacagaccttcctatgaaaatctagtcaaggatttctaggtcagggcat |
113 |
Q |
| |
|
|||||||| |||||||||||| |||| ||| | ||||||||| ||| | |||||||| || ||| ||||| || ||||| |||| | | |||||| |
|
|
| T |
20685 |
atcaagggttactttgctgcttaacagatggttgattacttcgaaatgttgaacagaccatcgtatatgaatctggtaaaggacttctggattagggcag |
20586 |
T |
|
| Q |
114 |
aagtgttcgacagaagaaatgctgaagaagaagaagttagggctgtaaaggagaatcccaaactcaaagggaaatcaagaacagaaatgggtctaagacc |
213 |
Q |
| |
|
||||||||||||||| | |||||||||| ||||||| || | |||||||| ||||| | | | ||||| |||||||| | |||||||||||| | ||| |
|
|
| T |
20585 |
aagtgttcgacagaaaagatgctgaagaggaagaagctaagctggtaaaggaaaatccaagattgaaaggaaaatcaaggatagaaatgggtctcaaacc |
20486 |
T |
|
| Q |
214 |
attcaacggaacagaaataagatcagcagtgatgggtatggaaattaccatcacggtggaaacaatttctagagcatgcagatgctc |
300 |
Q |
| |
|
|||| |||||| |||| || || || ||||||||||||||| ||||||| || | |||| |||| ||| ||||||||||||||| |
|
|
| T |
20485 |
gttcagaggaacataaattaggtctgctgtgatgggtatggaagttaccatgactctagaaaaaattgctaaagcatgcagatgctc |
20399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0207 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: scaffold0207
Description:
Target: scaffold0207; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 83 - 300
Target Start/End: Complemental strand, 24407 - 24190
Alignment:
| Q |
83 |
aatctagtcaaggatttctaggtcagggcataagtgttcgacagaagaaatgctgaagaagaagaagttagggctgtaaaggagaatcccaaactcaaag |
182 |
Q |
| |
|
||||| || ||||| |||| ||| |||||| ||||||||||||||| | |||||||||||||||||| || | || || || ||||| | |||||||| |
|
|
| T |
24407 |
aatctggtaaaggacttctgggttagggcagaagtgttcgacagaaaagatgctgaagaagaagaagctaagctggtgaaagaaaatcctagactcaaag |
24308 |
T |
|
| Q |
183 |
ggaaatcaagaacagaaatgggtctaagaccattcaacggaacagaaataagatcagcagtgatgggtatggaaattaccatcacggtggaaacaatttc |
282 |
Q |
| |
|
||||||| || | ||||||||||| | ||| |||| |||||| |||| || || || |||||||||||||| |||| ||||| || ||||||||| | |
|
|
| T |
24307 |
ggaaatcgagggcggaaatgggtctcaaaccgttcagaggaacataaattaggtctgctgtgatgggtatggagattatcatcattgtagaaacaattgc |
24208 |
T |
|
| Q |
283 |
tagagcatgcagatgctc |
300 |
Q |
| |
|
|| ||||||||||||||| |
|
|
| T |
24207 |
taaagcatgcagatgctc |
24190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0132 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: scaffold0132
Description:
Target: scaffold0132; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 107 - 300
Target Start/End: Original strand, 21438 - 21631
Alignment:
| Q |
107 |
agggcataagtgttcgacagaagaaatgctgaagaagaagaagttagggctgtaaaggagaatcccaaactcaaagggaaatcaagaacagaaatgggtc |
206 |
Q |
| |
|
|||||| |||||||||||| || | ||| |||||| ||||||| || | |||||||| ||| | | | ||||||||||||| || || |||||||||| |
|
|
| T |
21438 |
agggcagaagtgttcgacataaaagatgttgaagaggaagaagctaagctggtaaaggaaaatacaagattcaaagggaaatcgaggactgaaatgggtc |
21537 |
T |
|
| Q |
207 |
taagaccattcaacggaacagaaataagatcagcagtgatgggtatggaaattaccatcacggtggaaacaatttctagagcatgcagatgctc |
300 |
Q |
| |
|
| | ||||||||| || || || |||| || || |||||||||||||| |||||||||| || ||||||||| ||| ||||||| ||||||| |
|
|
| T |
21538 |
tcaaaccattcaaaggtactgagttaaggtctgctgtgatgggtatggaccttaccatcactgtagaaacaattgctaaagcatgcggatgctc |
21631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0132; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 107 - 300
Target Start/End: Original strand, 34639 - 34832
Alignment:
| Q |
107 |
agggcataagtgttcgacagaagaaatgctgaagaagaagaagttagggctgtaaaggagaatcccaaactcaaagggaaatcaagaacagaaatgggtc |
206 |
Q |
| |
|
|||||| |||||||||||| || | ||| |||||| ||||||| || | |||||||| ||| | | | ||||||||||||| || || |||||||||| |
|
|
| T |
34639 |
agggcagaagtgttcgacataaaagatgttgaagaggaagaagctaagctggtaaaggaaaattcaagattcaaagggaaatcgaggactgaaatgggtc |
34738 |
T |
|
| Q |
207 |
taagaccattcaacggaacagaaataagatcagcagtgatgggtatggaaattaccatcacggtggaaacaatttctagagcatgcagatgctc |
300 |
Q |
| |
|
| | ||||||||| || || | ||| | || || |||||||||||||| |||||||||| || ||||||||| ||| ||||||| ||||||| |
|
|
| T |
34739 |
tcaaaccattcaaaggtactaagatatggtctgctgtgatgggtatggaccttaccatcactgtagaaacaattgctaaagcatgcggatgctc |
34832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0269 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0269
Description:
Target: scaffold0269; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 179 - 302
Target Start/End: Complemental strand, 10847 - 10724
Alignment:
| Q |
179 |
aaagggaaatcaagaacagaaatgggtctaagaccattcaacggaacagaaataagatcagcagtgatgggtatggaaattaccatcacggtggaaacaa |
278 |
Q |
| |
|
||||| |||||||| || ||||||||||| ||||| |||| || || | || || |||||||||||||||||||| || |||||||| |||||||| |
|
|
| T |
10847 |
aaaggaaaatcaaggactgaaatgggtctcagaccgttcagaggcactaagatcaggtcagcagtgatgggtatggagatcaccatcactcaggaaacaa |
10748 |
T |
|
| Q |
279 |
tttctagagcatgcagatgctcaa |
302 |
Q |
| |
|
| ||||||||||||||||||||| |
|
|
| T |
10747 |
tagctagagcatgcagatgctcaa |
10724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0547 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0547
Description:
Target: scaffold0547; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 158 - 297
Target Start/End: Complemental strand, 4542 - 4403
Alignment:
| Q |
158 |
gtaaaggagaatcccaaactcaaagggaaatcaagaacagaaatgggtctaagaccattcaacggaacagaaataagatcagcagtgatgggtatggaaa |
257 |
Q |
| |
|
||||||||||| || || || ||||| |||||||||| |||||||| | | ||| ||||| || || ||||||||||| || |||||||| ||||| | |
|
|
| T |
4542 |
gtaaaggagaacccgaagcttaaaggaaaatcaagaatggaaatgggattgaaaccgttcaagggtactgaaataagatctgctgtgatgggaatggaga |
4443 |
T |
|
| Q |
258 |
ttaccatcacggtggaaacaatttctagagcatgcagatg |
297 |
Q |
| |
|
| |||||||| | ||||| ||| |||||| ||||||||| |
|
|
| T |
4442 |
tcaccatcactgcagaaactattgctagagtatgcagatg |
4403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 158 - 297
Target Start/End: Original strand, 16815717 - 16815856
Alignment:
| Q |
158 |
gtaaaggagaatcccaaactcaaagggaaatcaagaacagaaatgggtctaagaccattcaacggaacagaaataagatcagcagtgatgggtatggaaa |
257 |
Q |
| |
|
||||||||||| || || || ||||| |||||||||| |||||||| | | ||| ||||| || || ||||||||||| || |||||||| ||||| | |
|
|
| T |
16815717 |
gtaaaggagaacccgaagcttaaaggaaaatcaagaatggaaatgggattgaaaccgttcaagggtactgaaataagatctgctgtgatgggaatggaga |
16815816 |
T |
|
| Q |
258 |
ttaccatcacggtggaaacaatttctagagcatgcagatg |
297 |
Q |
| |
|
| |||||||| | ||||| ||| |||||| ||||||||| |
|
|
| T |
16815817 |
tcaccatcactgcagaaactattgctagagtatgcagatg |
16815856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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