View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7169_high_10 (Length: 511)
Name: NF7169_high_10
Description: NF7169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7169_high_10 |
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| [»] scaffold0018 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 436; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 44 - 495
Target Start/End: Complemental strand, 2181401 - 2180951
Alignment:
| Q |
44 |
ttagagaatatctaagacagaatggaagatgcactgtcattgtagactaattttacactgacaactaatgagaattcaatattttgcagttatattaaga |
143 |
Q |
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| T |
2181401 |
ttagagaatatctaagacagaatggaagatgcactgtcattgtagactaattttacactgacaactaatgagaattcaatattttgcagttatattaaga |
2181302 |
T |
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| Q |
144 |
tgtggttacaaattggattttatgtggcaatatggagttttcattgaatgtcaatgtaaaactaatttacaccgatagtgtatcaccattaaactctatt |
243 |
Q |
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| T |
2181301 |
tgtggttacaaattggattt-atgtggcaatatggagttttcattgaatgtcaatgtaaaactaatttacgccgatagtgtatcaccattaaactctatt |
2181203 |
T |
|
| Q |
244 |
ttgaaatggcataaggatgactaactttctctcgagatggctgaatagcatctgaagcgattcaactattagtattatacaaaactgatccatataaatg |
343 |
Q |
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| T |
2181202 |
ttgaaatggcataaggatgactaactttctctcgaggtggctgaatagcatctgaagcgattcaactattagtattatacaaaactgatccatataaatg |
2181103 |
T |
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| Q |
344 |
ttgttgaattttcttttattattaaaaatcattaataagtcaaaataaaagaacatgaaaagtaaacttacaactgaaatgccacctgctattgcagcat |
443 |
Q |
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| T |
2181102 |
ttgttgaattttcttttattattaaaaatcattaataagtcaaaataaaagaacatgaaaagtaaacttacaactgaaatgccacctgctattgcagcat |
2181003 |
T |
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| Q |
444 |
ttgcagcttccaatgccacttctgcactatatgtaagtgacaaacaaaaagt |
495 |
Q |
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| T |
2181002 |
ttgcagcttccaatgccacttctgcactatatgtaagtgacaaacaaaaagt |
2180951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 2181515 - 2181402
Alignment:
| Q |
1 |
gttacagatttacactgtcattgtggactaattttacactctcttagagaatatctaagacagaatggaagatgcactgtcattgtagactaattttaca |
100 |
Q |
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| T |
2181515 |
gttacagatttacactgtcattatagactaattttacactctcttagagaatatctaagacagaatggaagatgcactgtcattgtagactaattttaca |
2181416 |
T |
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| Q |
101 |
ctgacaactaatga |
114 |
Q |
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| T |
2181415 |
ctgacaactaatga |
2181402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 179 - 239
Target Start/End: Original strand, 15199665 - 15199725
Alignment:
| Q |
179 |
agttttcattgaatgtcaatgtaaaactaatttacaccgatagtgtatcaccattaaactc |
239 |
Q |
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| T |
15199665 |
agttttcattgtatgtcaatgtaaaactaatttacatagacagtgcatctccattaaactc |
15199725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 181 - 223
Target Start/End: Original strand, 191809 - 191851
Alignment:
| Q |
181 |
ttttcattgaatgtcaatgtaaaactaatttacaccgatagtg |
223 |
Q |
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| T |
191809 |
ttttcattgaatgtcaatgtaaaactattttacaccaatagtg |
191851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 198 - 239
Target Start/End: Original strand, 9321570 - 9321611
Alignment:
| Q |
198 |
tgtaaaactaatttacaccgatagtgtatcaccattaaactc |
239 |
Q |
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| T |
9321570 |
tgtaaaactaatttacaccgacagtgcatcaccattaaactc |
9321611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 191 - 240
Target Start/End: Complemental strand, 5431769 - 5431720
Alignment:
| Q |
191 |
atgtcaatgtaaaactaatttacaccgatagtgtatcaccattaaactct |
240 |
Q |
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| T |
5431769 |
atgtcagtgtaaaactaatttacaccgacagtgtatgactattaaactct |
5431720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 72 - 128
Target Start/End: Original strand, 18901503 - 18901559
Alignment:
| Q |
72 |
atgcactgtcattgtagactaattttacactgacaactaatgagaattcaatatttt |
128 |
Q |
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| T |
18901503 |
atgcactgtcagtgtaaactaattttacattgacatctaatgagaatccagtatttt |
18901559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 79 - 176
Target Start/End: Complemental strand, 18358505 - 18358408
Alignment:
| Q |
79 |
gtcattgtagactaattttacactgacaactaatgagaattcaatattttgcagtt-atattaagatgtggttacaaattggattttatgtggcaatat |
176 |
Q |
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| T |
18358505 |
gtcagtgtaaactaattttacactgacgtccaatgagaatcaagtatgttgcagttaattttaaaatgtggttacaaagtgga-tttatgtggcgatat |
18358408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 239
Target Start/End: Original strand, 1811945 - 1812002
Alignment:
| Q |
182 |
tttcattgaatgtcaatgtaaaactaatttacaccgatagtgtatcaccattaaactc |
239 |
Q |
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| T |
1811945 |
tttcattggatgtcagtgtaaaactaatatgcagcgacagtgcatcaccattaaactc |
1812002 |
T |
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