View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7169_high_24 (Length: 270)
Name: NF7169_high_24
Description: NF7169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7169_high_24 |
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Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 19568051 - 19568313
Alignment:
| Q |
1 |
tgaattgtgaattagaaattagggttttccatgatttgcaaacgagctttaattggagaagggatctcaccggaagcctcagaaggatgttgaagaggac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
19568051 |
tgaattgtgaattagaaattagggttttccatgatttgcaaacgagctttaattggagaagggatctcaccggaagcctcagaaggatgtcgaagaggac |
19568150 |
T |
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| Q |
101 |
ttcttccggaaaaacaggtgcttcgtcgccggtcggaggaagaggctgttcgttcttgacggtggtttcggacagtggttgagaaaaaacggtgtggttt |
200 |
Q |
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||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19568151 |
ttcttccggcaaaataggtgcttcgtcgccggtcggaggaagaggctgttcgttcttgacggtggtttcggacagtggttgagaaaaaacggtgtggttt |
19568250 |
T |
|
| Q |
201 |
tgagaatggtggagacgaatacacgaaagatcggtgattttgcattccccagtcttcatctca |
263 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19568251 |
tgagaatggtggagacgaatacacgaaagatcggtgattttgcattccccagtcttcatctca |
19568313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 2 - 208
Target Start/End: Complemental strand, 23681708 - 23681499
Alignment:
| Q |
2 |
gaattgtgaattagaaattagggttttccatgatttgcaaacgagctttaattggagaagggatctcaccggaagcctcagaaggatgttgaagaggact |
101 |
Q |
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|||||| | ||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||| | |||| |||| |
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| T |
23681708 |
gaattgaggattggaaattagggttttccatgatttggaaacgcactttaattggagaagggatctcacaggaagcctcagaaggatatcgaagttgact |
23681609 |
T |
|
| Q |
102 |
tcttccggaaaaacaggtgcttcgtcgc---cggtcggaggaagaggctgttcgttcttgacggtggtttcggacagtggttgagaaaaaacggtgtggt |
198 |
Q |
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| T |
23681608 |
tcttccggcaaaacaggtgcttcgtcgccggcggtcggaggaagaggctgttcgttcttgacggtggtttcggacagtggttcagtacaaacgacgtcgt |
23681509 |
T |
|
| Q |
199 |
tttgagaatg |
208 |
Q |
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|||||||||| |
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| T |
23681508 |
tttgagaatg |
23681499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 115
Target Start/End: Complemental strand, 43907737 - 43907624
Alignment:
| Q |
2 |
gaattgtgaattagaaattagggttttccatgatttgcaaacgagctttaattggagaagggatctcaccggaagcctcagaaggatgttgaagaggact |
101 |
Q |
| |
|
|||||| |||| ||| |||||||||||||||||||||||||| ||| |||||| ||||||| ||||||||||||||| |||||| | || || || | |
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| T |
43907737 |
gaattgggaatcagagattagggttttccatgatttgcaaacacacttgtattggacaagggatttcaccggaagcctcaaaaggatctcgacgatgagt |
43907638 |
T |
|
| Q |
102 |
tcttccggaaaaac |
115 |
Q |
| |
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|||||||| ||||| |
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| T |
43907637 |
tcttccggcaaaac |
43907624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 44005469 - 44005556
Alignment:
| Q |
1 |
tgaattgtgaattagaaattagggttttccatgatttgcaaacgagctttaattggagaagggatctcaccggaagcctcagaaggat |
88 |
Q |
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||||||| | |||||| |||||||||||||| |||||||||||| ||| |||| || |||||||||||||||||| ||| |||||| |
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| T |
44005469 |
tgaattggggattagagattagggttttccaagatttgcaaacgcacttacattgaaggagggatctcaccggaagcttcaaaaggat |
44005556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 43986912 - 43986982
Alignment:
| Q |
18 |
attagggttttccatgatttgcaaacgagctttaattggagaagggatctcaccggaagcctcagaaggat |
88 |
Q |
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||||||||||||||||||||||||| | || ||||| || |||||| |||||||||| |||| |||||| |
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| T |
43986912 |
attagggttttccatgatttgcaaatgcatttgaattgaagcagggatttcaccggaagtctcaaaaggat |
43986982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 21 - 78
Target Start/End: Complemental strand, 43901944 - 43901887
Alignment:
| Q |
21 |
agggttttccatgatttgcaaacgagctttaattggagaagggatctcaccggaagcc |
78 |
Q |
| |
|
|||||||||||||||||||||||| | || |||| |||| |||||||||||||||| |
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|
| T |
43901944 |
agggttttccatgatttgcaaacgcgtttatattgcagaatcgatctcaccggaagcc |
43901887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 43
Target Start/End: Original strand, 19888560 - 19888589
Alignment:
| Q |
14 |
agaaattagggttttccatgatttgcaaac |
43 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
19888560 |
agaaattagggttttccatgatttgcaaac |
19888589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 43
Target Start/End: Original strand, 19879695 - 19879727
Alignment:
| Q |
11 |
attagaaattagggttttccatgatttgcaaac |
43 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |
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| T |
19879695 |
attagaaattagggttttccaagatttgcaaac |
19879727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 43
Target Start/End: Complemental strand, 14748618 - 14748589
Alignment:
| Q |
14 |
agaaattagggttttccatgatttgcaaac |
43 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
14748618 |
agaaattagggttttccatgatttgcaaac |
14748589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 43
Target Start/End: Original strand, 32579711 - 32579740
Alignment:
| Q |
14 |
agaaattagggttttccatgatttgcaaac |
43 |
Q |
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|||||||||||||||||||||||||||||| |
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|
| T |
32579711 |
agaaattagggttttccatgatttgcaaac |
32579740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 20578968 - 20579029
Alignment:
| Q |
18 |
attagggttttccatgatttgcaaacgagctttaattggagaagggatctcaccggaagcct |
79 |
Q |
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|||||||||||||||||||||||||| | || |||| || ||||||||||| |||||||| |
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| T |
20578968 |
attagggttttccatgatttgcaaacacgtttcaatttcagtagggatctcactggaagcct |
20579029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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