View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7169_high_26 (Length: 267)
Name: NF7169_high_26
Description: NF7169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7169_high_26 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 17 - 260
Target Start/End: Original strand, 33203425 - 33203668
Alignment:
| Q |
17 |
caaaacctggcttataattaccctaacacaaacactaatctggatcatttagttaatgatttcaataataaccaaccaaacaacaacaccaatagcaact |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33203425 |
caaaacctggcttataattaccctaacacaaacactaatctggatcatttagttaatgatttcaataataaccaaccaaacaacaacaccaatagcaact |
33203524 |
T |
|
| Q |
117 |
gggatttcattgaagagcttattcgtgccgctgattgtttcgataacaatcatcttcaactagctcaagcaatattagagcggctgaatcaacggctacg |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33203525 |
gggatttcattgaagagcttattcgtgccgctgattgtttcgataacaatcatcttcaactagctcaagcaatattagagcggctgaatcaacggctacg |
33203624 |
T |
|
| Q |
217 |
atctccaaccggtaaaccgttacaccgtgccgcgtttcatttca |
260 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
33203625 |
atctccaaccggtaaaccattacaccgtgccgcgtttcatttca |
33203668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University