View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7169_high_33 (Length: 247)
Name: NF7169_high_33
Description: NF7169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7169_high_33 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 21 - 232
Target Start/End: Original strand, 31215468 - 31215679
Alignment:
| Q |
21 |
attcatgaggattattggaagtgtgaggaggagcatcataggctctagaatctgttctccgaagccgcagcaaaggcgtaaaattgttcatgtttcggct |
120 |
Q |
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| T |
31215468 |
attcatgaggattattggaagtgtgaggaggagcatcataggctctagaatctgttctccggagccgcggcaaaggcgtaaaattgttcatgtttcggct |
31215567 |
T |
|
| Q |
121 |
catcgtttcagcttcctcctcaattgatcatgcatgcatatattcttttcttatttagagggtgtgaatattgcttcacctgtgaacttaaggaataaat |
220 |
Q |
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| T |
31215568 |
catcgtttcagcttcctcctcaattgatcatgcatgcatatattcttttcttatttagagggtgtgaatattgcttcacttgtggacttaaggaataaat |
31215667 |
T |
|
| Q |
221 |
ggctctgttcat |
232 |
Q |
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|||||||||||| |
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| T |
31215668 |
ggctctgttcat |
31215679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 21 - 190
Target Start/End: Original strand, 31202186 - 31202355
Alignment:
| Q |
21 |
attcatgaggattattggaagtgtgaggaggagcatcataggctctagaatctgttctccgaagccgcagcaaaggcgtaaaattgttcatgtttcggct |
120 |
Q |
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|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
31202186 |
attcatgaggattattggaagtgtgatgaggagcaccataggctctagaatctgttctccgaagccctggcaaaggcgtaaaattgttcatgtttcggct |
31202285 |
T |
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| Q |
121 |
catcgtttcagcttcctcctcaattgatcatgcatgcatatattcttttcttatttagagggtgtgaata |
190 |
Q |
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| T |
31202286 |
catcgtttcaccttcctcctcaattgttcatgcatgcatatattcttttcttatttagagggtgtaaata |
31202355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 21 - 199
Target Start/End: Original strand, 13605958 - 13606136
Alignment:
| Q |
21 |
attcatgaggattattggaagtgtgaggaggagcatcataggctctagaatctgttctccgaagccgcagcaaaggcgtaaaattgttcatgtttcggct |
120 |
Q |
| |
|
||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |
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| T |
13605958 |
attcatgaggattattgtaagtttgataaggagcatcataggctctagaatctgttctccgaagccctggctaaggcgtaaaattgttcatgtttcggct |
13606057 |
T |
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| Q |
121 |
catcgtttcagcttcctcctcaattgatcatgcatgcatatattcttttcttatttagagggtgtgaatattgcttcac |
199 |
Q |
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|||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
13606058 |
catcgtttcaccttcctcctcaattgaacatgcatgcatatattcttttcttatttagagggtgtaaatattgcttcac |
13606136 |
T |
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