View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7169_high_6 (Length: 555)
Name: NF7169_high_6
Description: NF7169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7169_high_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 542; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 1 - 546
Target Start/End: Complemental strand, 5049484 - 5048939
Alignment:
| Q |
1 |
cgcttcacttccaattcatacaacaaaactctactcttttttctatgtccatattggtccttgatcatatatttgcattcatcacatataagaaaaaatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
5049484 |
cgcttcacttccaattcatacaacaaaactctactcttttttctatgtccatattggtccttgatcatatatttgcattcatcacatataagaaaaaaat |
5049385 |
T |
|
| Q |
101 |
ttacaagattaatgatagtataatgggaaaacaagggtctcctagaagaccaactcctgaatgtaagggtgctgctagaggaatgttaggaatgaataaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5049384 |
ttacaagattaatgatagtataatgggaaaacaagggtctcctagaagaccaactcctgaatgtaagggtgctgctagaggaatgttaggaatgaataaa |
5049285 |
T |
|
| Q |
201 |
gattacaagataacaagcaatgatccaccttcatggaagaggatgacagcggttgattgtcgttggcattcgaaaactttgttgctacatggtctgaaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5049284 |
gattacaagataacaagcaatgatccaccttcatggaagaggatgacagcggttgattgtcgttggcattcgaaaactttgttgctacatggtctgaaaa |
5049185 |
T |
|
| Q |
301 |
atgattcttcaaagtacaattctattaagggattctatgttggaaaaaagaacattagaactattgttctcatgtttggattgttgggttgtcttttcct |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5049184 |
atgattcttcaaagtacaattctattaagggattctatgttggaaaaaagaacattagaactattgttctcatgtttggattgttgggttgtcttttcct |
5049085 |
T |
|
| Q |
401 |
tcttgattctattttcatctcttttttcgagtttgaaaatattcaaccaagtgcagcagcctcaaatcattcaagtgagcttcaggtataattcagtatt |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5049084 |
tcttgattctattttcatctcttttttcgagtttgaaaatattcaaccaagtgcagcagcctcaaatcattcaagtgagcttcaggtataattcagtatt |
5048985 |
T |
|
| Q |
501 |
ccatattattgtaagctataggtgcatatttcaagcagagtataat |
546 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5048984 |
ccatattattgtaagctataggtgcatatttcaagcagagtataat |
5048939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University