View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7169_high_7 (Length: 553)
Name: NF7169_high_7
Description: NF7169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7169_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 1 - 550
Target Start/End: Complemental strand, 43366893 - 43366351
Alignment:
| Q |
1 |
ccgtctgccttctccttcttttcatcatgctctctctcttcgctccttccccttttattgtaaatgctcttcatccttctacttcaattacattcctcat |
100 |
Q |
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| T |
43366893 |
ccgtctgccttctctttcttttcatcatgctctctctcttcgctccttccccttttattgtaaatgctcttcatccttctacttcaattacattcctcat |
43366794 |
T |
|
| Q |
101 |
tccattctgctgctgtgtgtaactttgattgtatttcaggataatgatttggttaaatctcgtttagattctcatcagcaatccccatttcacattccgg |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43366793 |
tccattttgctgctgtgtgtaactttgattgtatttcaggataatgatttggttaaatctcgtttagattctcatcagcaatccccatttcacattccgg |
43366694 |
T |
|
| Q |
201 |
taatcaaacaatgttctcaccttcnnnnnnnatgcattttttgttatgttgctaatatcttccttttgtttcttcgaatttgaagacaagtgaaggtact |
300 |
Q |
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||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43366693 |
taatcaaacaatgttctcacctt---tttttattcattttttgttatgttgctaatatcttccttttgtttcttcgaatttgaagacaagtgaaggtact |
43366597 |
T |
|
| Q |
301 |
tacaagcatgatctatggaattcgaggaactcgcagcttttctctgcctgcagtaatgccggtgtcaactttgcaagtaaacttcatcctagactcctag |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
43366596 |
tacaagcatgatctatggaattcgaggaactcgcagcttttctctgcctgcagttatgccggtgtcaactttgcaagtaaacttcatcctagactc---- |
43366501 |
T |
|
| Q |
401 |
ctagtccttttttcatctcatcaatttagttttgattgagtgtatttatttatatttctaattgttgcagaggagaataacaaaactcatccggaccgat |
500 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
43366500 |
ctagtccttttttcatctcatcaatttaattttgattgagtgtatttatttatatttctaattgttgcagaggctaatagcaaaactcatccggaccgat |
43366401 |
T |
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| Q |
501 |
actcgttaatcgcacccagtggaggcttaaataaacagagaacaggggta |
550 |
Q |
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||| |||||||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
43366400 |
acttgttaatcgcaaccagtggaggcttaaatcaacagagaacaggggta |
43366351 |
T |
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