View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7169_high_9 (Length: 512)
Name: NF7169_high_9
Description: NF7169
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7169_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 19 - 499
Target Start/End: Complemental strand, 39666022 - 39665542
Alignment:
| Q |
19 |
gttatcgtgtttatcgtgataacaactcgacagaacaaaaactaccagtttcaggcgatgagaagccgtgattcgagaatgaaagctgtgaatgagatgc |
118 |
Q |
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| T |
39666022 |
gttatcgtgtttatcgtgataacaactcgacagaacaaaaactaccagtttcaggcgatgataagccgtgattcgagaatgaaagctgtgaatgagatgc |
39665923 |
T |
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| Q |
119 |
ttaattacatgcgtgttatcaagtttcaggcatgggagaatcatttcaatgatagaatcttgagtttccgtgggtccgaattcgggtggctatcgaagtt |
218 |
Q |
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| T |
39665922 |
ttaattacatgcgtgttatcaagtttcaggcatgggagaatcatttcaacgatagaatcttgagtttccgtgggtccgaattcgggtggctatcgaagtt |
39665823 |
T |
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| Q |
219 |
tatgtactcgatttgtggcaatatcattgtgttgtggagctctcctatgttgatatcaactctcacttttggtaccgcgcttttgcttggagttcgactt |
318 |
Q |
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| T |
39665822 |
tatgtactcgatttgtggcaatatcattgtgttgtggagctctcctatgttgatatcaactctcacttttggtaccgcgcttttgcttggagttcgactt |
39665723 |
T |
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| Q |
319 |
gatgctggaactgttttcactacaacgtctgtgtttaggattctgcaggaacctattaggacttttcctcagtcaatgatatctctttcacaagctttag |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39665722 |
gatgctggaactgttttcactacaacgtctgtgtttaggattctgcaggaacctattaggacttttcctcagtcaatgatatctctttcacaagctttag |
39665623 |
T |
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| Q |
419 |
tatcacttggaaggttggataggtacatgtctagtagggaactaagtgatgattcagttgagagaaatgaagggtgtgatg |
499 |
Q |
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| T |
39665622 |
tatcacttgggaggttggataggtacatgtctagcagggaactaagtgatgattcagttgagagaaatgaagggtgtgatg |
39665542 |
T |
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